genome.fa.s1474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001474.1 Hibiscus syriacus cultivar Beakdansim tig00002858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110130

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406--444	14	2.8	14	100	0	78	84	0	15	0	0.62
806--852	18	2.7	18	87	6	71	31	6	4	57	1.43
794--858	18	3.6	17	75	21	62	26	9	3	61	1.41
1962--2645	121	5.9	112	80	11	509	40	14	19	26	1.89
2189--2727	121	4.4	121	89	6	734	41	14	18	25	1.89
2097--2727	243	2.6	244	86	6	840	40	14	18	25	1.89
2966--3002	3	11.7	3	88	11	56	35	0	0	64	0.94
4622--4677	23	2.5	23	76	2	60	46	3	0	50	1.19
6169--6206	17	2.3	17	90	4	60	47	5	2	44	1.39
6373--6436	29	2.2	29	97	0	119	32	9	12	45	1.74
6402--6643	100	2.3	104	87	4	339	35	11	12	40	1.79
6609--6664	29	1.9	29	92	0	94	30	8	12	48	1.72
6611--6672	29	2.1	29	87	0	88	33	8	12	45	1.72
6758--6806	16	2.8	18	76	17	50	44	0	2	53	1.12
7137--7199	30	2.1	30	85	5	83	50	9	9	30	1.66
7414--7475	28	2.3	26	83	5	70	14	16	8	61	1.55
8828--8871	23	2.0	22	90	4	70	45	9	13	31	1.75
8788--8948	86	1.9	86	88	2	243	41	11	13	33	1.80
8972--9660	197	3.5	200	79	11	624	30	15	14	39	1.87
8965--9660	198	3.5	196	80	10	697	30	16	14	39	1.88
12119--12673	197	2.8	198	88	1	828	31	16	13	38	1.88
12617--12728	51	2.2	52	80	13	126	25	20	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14168--14213	6	7.7	6	92	0	65	17	32	8	41	1.80
14168--14213	12	3.8	12	94	0	74	17	32	8	41	1.80
14168--14213	18	2.6	18	92	0	74	17	32	8	41	1.80
15668--16202	197	2.7	200	91	4	877	32	16	14	36	1.89
16499--16552	26	2.0	27	85	7	74	11	22	14	51	1.73
18275--18335	32	1.9	32	93	0	104	22	42	0	34	1.54
18331--18377	21	2.2	21	100	0	94	14	31	0	53	1.42
18390--18454	21	3.1	21	90	0	103	15	30	10	43	1.81
18537--18569	15	2.2	15	94	0	57	12	60	6	21	1.53
20701--20749	20	2.5	19	93	6	89	22	14	10	53	1.71
22501--22558	29	2.0	30	82	3	73	32	6	13	46	1.70
28661--28727	27	2.5	26	80	4	71	41	4	7	46	1.52
34378--34620	2	125.0	2	66	18	95	48	2	3	45	1.33
34514--34563	25	2.1	23	85	7	64	56	2	6	36	1.36
34731--34795	19	3.4	19	93	4	105	44	0	30	24	1.54
34731--34839	35	2.9	38	84	6	118	44	0	28	26	1.54
34733--34839	19	5.8	18	81	5	99	44	0	28	27	1.54
34799--34851	17	3.1	17	69	15	54	39	0	30	30	1.57
34770--34851	35	2.3	35	91	2	128	42	0	30	26	1.56
35221--35257	15	2.3	16	86	13	58	43	5	8	43	1.57
35227--35257	15	2.1	15	100	0	62	45	6	6	41	1.55
35405--35441	15	2.3	16	86	13	58	43	5	8	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35411--35441	15	2.1	15	100	0	62	45	6	6	41	1.55
35439--35496	10	6.1	10	82	10	61	12	0	37	50	1.40
35046--35683	8	80.8	8	90	4	650	20	0	29	48	1.55
35865--35935	14	5.2	13	76	17	54	47	30	0	21	1.51
36230--36274	15	3.1	15	81	15	58	42	0	0	57	0.98
36235--36272	13	2.8	13	92	8	58	44	0	0	55	0.99
36270--36318	25	1.9	26	87	4	73	46	8	6	38	1.58
36875--36911	15	2.4	17	82	17	53	43	2	10	43	1.53
36906--36939	13	2.6	14	86	13	54	52	5	0	41	1.25
37047--37080	14	2.4	14	90	0	50	47	23	0	29	1.52
40391--40435	21	2.2	21	84	7	58	11	31	33	24	1.90
40417--40478	20	2.9	21	85	9	72	19	25	33	20	1.96
46755--46804	23	2.1	24	92	3	84	50	2	0	48	1.12
47028--47074	16	2.8	17	90	3	69	40	10	25	23	1.87
48638--48667	13	2.3	13	100	0	60	23	43	26	6	1.78
54152--54186	18	1.9	18	88	0	52	22	40	20	17	1.92
54368--54401	10	3.4	10	83	0	50	32	35	0	32	1.58
54468--54515	8	5.8	8	76	9	51	29	0	2	68	1.01
54448--54517	26	2.5	26	84	11	77	28	0	4	67	1.10
60446--60510	29	2.2	29	83	5	78	18	0	36	44	1.50
60568--60658	45	2.0	45	82	0	110	20	30	30	17	1.96
65564--65667	51	2.0	51	83	3	129	20	26	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65686--65785	50	2.0	51	86	9	143	20	32	30	18	1.96
67292--67435	56	2.6	56	81	6	193	40	11	18	29	1.86
68080--68105	2	13.0	2	100	0	52	50	50	0	0	1.00
71828--71879	2	26.0	2	100	0	104	50	0	0	50	1.00
76834--76894	31	1.9	31	90	3	95	37	11	8	42	1.71
76978--77083	29	3.6	29	83	5	122	39	16	9	33	1.81
76949--77117	60	2.8	59	74	10	164	41	13	11	34	1.79
77215--77280	29	2.3	29	91	0	105	48	9	6	36	1.60
78955--79013	21	2.8	20	87	10	82	47	27	5	20	1.71
82415--82477	27	2.3	28	83	2	74	31	34	14	19	1.91
82524--82570	22	2.1	22	92	0	76	21	27	23	27	1.99
83019--83044	13	2.0	13	100	0	52	46	7	0	46	1.31
86711--86776	28	2.4	28	94	5	116	21	16	18	43	1.87
88269--88440	41	4.2	41	79	5	159	32	19	20	27	1.97
98638--98699	14	4.4	14	87	0	97	12	11	17	58	1.63
102922--103238	99	3.2	99	94	2	566	35	13	12	37	1.83
105697--106046	54	6.5	54	88	3	517	24	17	22	34	1.96
108204--108473	143	1.9	138	88	8	411	39	6	8	45	1.60
109256--109297	19	2.2	19	91	0	66	40	28	2	28	1.69

Tables:   1

The End!