genome.fa.s1477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001477.1 Hibiscus syriacus cultivar Beakdansim tig00002867_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95232

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2434--2478	19	2.4	19	96	0	81	33	2	8	55	1.43
2833--3981	198	5.8	198	84	4	1354	37	13	15	33	1.86
4641--4670	2	15.0	2	100	0	60	50	0	0	50	1.00
6832--6878	24	2.0	24	82	0	58	34	4	12	48	1.61
8216--9582	200	6.8	198	86	3	1636	38	13	15	32	1.87
8216--9582	399	3.4	396	84	4	1701	38	13	15	32	1.87
12645--13363	200	3.6	199	80	6	832	37	14	15	31	1.88
21599--21638	19	2.0	19	85	9	53	22	17	22	37	1.94
22176--22238	33	1.9	33	93	0	108	38	23	15	22	1.93
24150--24189	21	1.9	21	89	0	62	15	27	25	32	1.95
28163--28222	19	3.2	19	76	13	61	40	6	20	33	1.78
28756--28836	27	3.0	27	74	7	83	60	1	11	27	1.38
30537--31200	105	6.3	105	93	0	1087	23	18	24	33	1.97
31974--32064	46	1.9	48	91	4	150	16	24	14	45	1.84
41452--41485	10	3.4	10	87	0	50	73	0	5	20	1.04
42485--42556	26	2.6	27	76	8	74	62	1	11	25	1.36
45814--45864	13	3.9	13	89	0	75	17	43	21	17	1.88
45828--45888	31	2.0	31	86	0	86	18	42	21	18	1.89
45886--45924	20	2.0	20	100	0	78	17	30	25	25	1.97
48765--48886	31	3.9	31	73	6	95	20	28	25	25	1.99
58147--58425	100	2.8	101	84	5	302	40	10	10	39	1.74
58270--58475	100	2.1	99	81	9	231	38	10	13	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60775--60953	64	2.8	62	81	12	193	27	17	25	29	1.97
60796--60983	64	2.9	61	81	10	180	28	17	24	29	1.97
66454--66500	20	2.2	21	78	17	53	44	6	12	36	1.68
68547--68585	19	2.2	19	86	9	55	35	20	20	23	1.96
68564--68721	64	2.5	64	83	4	185	27	14	25	31	1.95
71695--71813	57	2.1	56	83	7	143	30	23	20	26	1.98
71705--71813	56	1.9	56	85	5	148	29	23	20	26	1.99
74022--74237	116	1.9	116	83	5	285	25	21	12	40	1.88
75258--75295	18	2.1	18	95	0	67	23	21	21	34	1.97
75546--75615	20	3.4	21	72	14	58	31	17	22	28	1.96
75661--76014	54	6.5	54	80	3	354	42	16	8	32	1.78
75661--76002	109	3.2	109	81	2	420	42	16	8	33	1.78
78816--79096	122	2.3	119	85	3	384	27	12	21	38	1.90
79159--79298	61	2.3	61	87	4	167	30	11	22	35	1.90
80617--80649	12	2.8	12	90	4	50	6	12	0	81	0.85
86743--86942	95	2.1	95	83	8	246	38	13	23	24	1.91
87364--87544	44	4.3	43	78	13	205	43	12	21	22	1.85
87445--87520	36	2.1	36	90	0	116	43	10	23	22	1.84
87396--87544	80	1.9	80	90	2	237	42	11	22	22	1.85
93971--94008	16	2.3	17	86	4	51	57	5	21	15	1.57
94299--94385	32	2.7	32	83	5	104	49	1	16	33	1.53
94299--94403	32	3.3	31	76	11	97	53	1	15	29	1.53

Tables:   1

The End!