Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001478.1 Hibiscus syriacus cultivar Beakdansim tig00002868_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 623040
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 1 of 5
Found at i:1001 original size:14 final size:14
Alignment explanation
Indices: 982--1013 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
972 TGGGAGTATA
982 TTCTAAAATATATC
1 TTCTAAAATATATC
996 TTCT--AATATATC
1 TTCTAAAATATATC
1008 TTCTAA
1 TTCTAA
1014 TTTATTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 4
0.80 0.00 0.20
Matches are distributed among these distances:
12 12 0.75
14 4 0.25
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (14 bp):
TTCTAAAATATATC
Found at i:1004 original size:10 final size:12
Alignment explanation
Indices: 988--1014 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
978 TATATTCTAA
988 AATATATCTTCT
1 AATATATCTTCT
1000 AATATATCTTCT
1 AATATATCTTCT
1012 AAT
1 AAT
1015 TTATTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (12 bp):
AATATATCTTCT
Found at i:1557 original size:26 final size:26
Alignment explanation
Indices: 1528--1588 Score: 99
Period size: 25 Copynumber: 2.4 Consensus size: 26
1518 TTTTATTTTA
1528 ATCACGTAATTTTAAAAAATTAA-TTC
1 ATCACGTAATTTT-AAAAATTAATTTC
1554 ATCACGTAA-TTTAAAAATTAATTTC
1 ATCACGTAATTTTAAAAATTAATTTC
1579 ATCACGTAAT
1 ATCACGTAAT
1589 ACAGTGTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 9 0.27
25 15 0.45
26 9 0.27
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (26 bp):
ATCACGTAATTTTAAAAATTAATTTC
Found at i:3648 original size:23 final size:24
Alignment explanation
Indices: 3610--3687 Score: 88
Period size: 23 Copynumber: 3.3 Consensus size: 24
3600 TCCATATCAT
* *
3610 AAATCAGAACAAAATTCAGATAAG
1 AAATCAGAACATAATTCAAATAAG
**
3634 AAATCA-AACATAATTCAAATCGG
1 AAATCAGAACATAATTCAAATAAG
**
3657 AAATCAGAACAT-ATTCAAATCGG
1 AAATCAGAACATAATTCAAATAAG
3680 AAATCAGA
1 AAATCAGA
3688 TAAACATTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 38 0.78
24 11 0.22
ACGTcount: A:0.54, C:0.15, G:0.12, T:0.19
Consensus pattern (24 bp):
AAATCAGAACATAATTCAAATAAG
Found at i:21711 original size:19 final size:19
Alignment explanation
Indices: 21687--21724 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
21677 TTAAGTGATG
21687 AAGAATGTAGTTAAAAGAT
1 AAGAATGTAGTTAAAAGAT
21706 AAGAATGTAGTTAAAAGAT
1 AAGAATGTAGTTAAAAGAT
21725 TAAAGATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (19 bp):
AAGAATGTAGTTAAAAGAT
Found at i:23217 original size:21 final size:21
Alignment explanation
Indices: 23156--23211 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
23146 TCTGGGCTAG
*
23156 GGGAATCGGTACCCATTTAAT
1 GGGAATCGGTACCCATTCAAT
*
23177 GGAAATCGGTACCCATTCAAT
1 GGGAATCGGTACCCATTCAAT
*
23198 GGGAATCGATACCC
1 GGGAATCGGTACCC
23212 CCTCAACCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (21 bp):
GGGAATCGGTACCCATTCAAT
Found at i:24947 original size:23 final size:23
Alignment explanation
Indices: 24914--24976 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
24904 AACCTTATAT
*
24914 GGCACTTCGGTGCATTTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
* *
24937 GGCACTACGGTGCAATTCTACGT
1 GGCACTTCGGTGCAATTCTACGC
24960 GGCACTTCGGTGCAATT
1 GGCACTTCGGTGCAATT
24977 TATATGAGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:30098 original size:20 final size:20
Alignment explanation
Indices: 30075--30113 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
30065 TTTGAAACTT
30075 AAATTCGCAACACGAAAATG
1 AAATTCGCAACACGAAAATG
* *
30095 AAATTTGCAATACGAAAAT
1 AAATTCGCAACACGAAAAT
30114 CGCAACGCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.15, G:0.13, T:0.21
Consensus pattern (20 bp):
AAATTCGCAACACGAAAATG
Found at i:31549 original size:42 final size:42
Alignment explanation
Indices: 31459--31558 Score: 119
Period size: 42 Copynumber: 2.4 Consensus size: 42
31449 ACCCCCACTT
* * * * *
31459 CGAGAGCCATCACCTAATCGAGCCGATTCTACAGCTCGACAC
1 CGAGAGCCATCACCTAATCGAACCGATTATACACCTCCACAA
* * *
31501 CCAGAGCCATCACTTGATCGAACCGATTATACACCTCCACAA
1 CGAGAGCCATCACCTAATCGAACCGATTATACACCTCCACAA
*
31543 TGAGAGCCATCACCTA
1 CGAGAGCCATCACCTA
31559 TTCCATCATA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.31, C:0.35, G:0.16, T:0.18
Consensus pattern (42 bp):
CGAGAGCCATCACCTAATCGAACCGATTATACACCTCCACAA
Found at i:31715 original size:21 final size:21
Alignment explanation
Indices: 31672--31721 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
31662 GTTAGGGGAG
*
31672 TTACGTGATGAGGTCAGTGCT
1 TTACGTGATGAGGTCAGTACT
*
31693 TTGCGTGATGAGGTC-GATACT
1 TTACGTGATGAGGTCAG-TACT
31714 TTACGTGA
1 TTACGTGA
31722 CGACAATGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 1 0.04
21 24 0.96
ACGTcount: A:0.20, C:0.14, G:0.32, T:0.34
Consensus pattern (21 bp):
TTACGTGATGAGGTCAGTACT
Found at i:32175 original size:42 final size:41
Alignment explanation
Indices: 32128--32245 Score: 173
Period size: 41 Copynumber: 2.9 Consensus size: 41
32118 GATTCACCTG
* *
32128 TCATCGTTCAAGAGGCCCCTCCTATCGTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGG-CCCTC
*
32170 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCCTG
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCCTC
* * *
32211 TCATCATTCAAGAGGTCTCTCCCACCGTTCAAGAG
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAG
32246 CCCGATTCAC
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
41 36 0.51
42 34 0.49
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.23
Consensus pattern (41 bp):
TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCCTC
Found at i:32233 original size:41 final size:42
Alignment explanation
Indices: 32124--32245 Score: 183
Period size: 42 Copynumber: 2.9 Consensus size: 42
32114 GCCCGATTCA
* *
32124 CCTGTCATCGTTCAAGAGGCCCCTCCTATCGTTCAAGAGGCC
1 CCTGTCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCC
*
32166 CCTCTCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGG-C
1 CCTGTCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCC
* * *
32207 CCTGTCATCATTCAAGAGGTCTCTCCCACCGTTCAAGAG
1 CCTGTCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAG
32246 CCCGATTCAC
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 36 0.49
42 37 0.51
ACGTcount: A:0.20, C:0.37, G:0.20, T:0.23
Consensus pattern (42 bp):
CCTGTCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCC
Found at i:32243 original size:21 final size:21
Alignment explanation
Indices: 32129--32245 Score: 146
Period size: 21 Copynumber: 5.6 Consensus size: 21
32119 ATTCACCTGT
32129 CATCGTTCAAGAGGCCCCTCC
1 CATCGTTCAAGAGGCCCCTCC
* *
32150 TATCGTTCAAGAGGCCCCTCT
1 CATCGTTCAAGAGGCCCCTCC
32171 CATCGTTCAAGAGGCCCCTCC
1 CATCGTTCAAGAGGCCCCTCC
* **
32192 CACCGTTCAAGAGG-CCCTGT
1 CATCGTTCAAGAGGCCCCTCC
* * *
32212 CATCATTCAAGAGGTCTCTCC
1 CATCGTTCAAGAGGCCCCTCC
*
32233 CACCGTTCAAGAG
1 CATCGTTCAAGAG
32246 CCCGATTCAC
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
20 16 0.20
21 65 0.80
ACGTcount: A:0.21, C:0.37, G:0.20, T:0.22
Consensus pattern (21 bp):
CATCGTTCAAGAGGCCCCTCC
Found at i:33697 original size:207 final size:206
Alignment explanation
Indices: 33342--33744 Score: 675
Period size: 207 Copynumber: 1.9 Consensus size: 206
33332 GTGCTGAAAG
* *
33342 TGTGCATAAACAACCATTTGTTATTGGTAAGTTTGAGCGAGTGTTGTTAATATATATACTCTTTG
1 TGTGCATAAACAACCAGTTGTTATTGGTAAGTTTGAGCAAGTGTTGTTAATATATATAC-CTTTG
*
33407 TTGGTTTGAAAATGTTTGGTTAAGTACGTAGAATTCAATAATTTGTTATTTGTTGGTTTTAGATG
65 TTGGTTTGAAAATGTTTGGTTAAGTACCTAGAATTCAATAATTTGTTATTTGTTGGTTTTAGATG
* *
33472 TGTAGAAAGTGTTGTTTGAGCAAATGTTTAGTTTCTGCAGGTTAATCCTGAAGTGAGTTGCATGA
130 TGTAGAAAGTGTTGTTTGAGCAAATATTTAGTTTCTACAGGTTAATCCTGAAGTGAGTTGCATGA
33537 AATTGATGTATT
195 AATTGATGTATT
* * *
33549 TGTGCATAAATAACCAGTTGTTATTGGTAAGTTTGTGCAAGTGTTGTTAACTGTTATATA-CTTT
1 TGTGCATAAACAACCAGTTGTTATTGGTAAGTTTGAGCAAGTGTTGTTAA-T-ATATATACCTTT
33613 -TTGGTTTGAAAATGTTTGGTTTAAGTACCTAGAATTCAATAATTTGTTATTTGTTGGTTTTAGA
64 GTTGGTTTGAAAATGTTTGG-TTAAGTACCTAGAATTCAATAATTTGTTATTTGTTGGTTTTAGA
*
33677 TGTGTAGAAAGTGTTGTTTGAGCAAATATTTGGTTTCTACAGGTTAATCCTGAAGTGAGTTGCAT
128 TGTGTAGAAAGTGTTGTTTGAGCAAATATTTAGTTTCTACAGGTTAATCCTGAAGTGAGTTGCAT
33742 GAA
193 GAA
33745 TGTATTTGGA
Statistics
Matches: 184, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
206 19 0.10
207 158 0.86
208 1 0.01
209 6 0.03
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.43
Consensus pattern (206 bp):
TGTGCATAAACAACCAGTTGTTATTGGTAAGTTTGAGCAAGTGTTGTTAATATATATACCTTTGT
TGGTTTGAAAATGTTTGGTTAAGTACCTAGAATTCAATAATTTGTTATTTGTTGGTTTTAGATGT
GTAGAAAGTGTTGTTTGAGCAAATATTTAGTTTCTACAGGTTAATCCTGAAGTGAGTTGCATGAA
ATTGATGTATT
Found at i:34302 original size:36 final size:36
Alignment explanation
Indices: 34262--34333 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
34252 AGAGGAAAAG
34262 ATGATTGTGATGGCACTAGTGATCCACAGGTCAACC
1 ATGATTGTGATGGCACTAGTGATCCACAGGTCAACC
*
34298 ATGATTGTGATGGCACTGGTGATCCACAGGTCAACC
1 ATGATTGTGATGGCACTAGTGATCCACAGGTCAACC
34334 TTGTATGACC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (36 bp):
ATGATTGTGATGGCACTAGTGATCCACAGGTCAACC
Found at i:39204 original size:21 final size:21
Alignment explanation
Indices: 39178--39217 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
39168 AAGACTATTT
39178 TCATTTTTCA-ATTTTGAAACA
1 TCATTTTT-ATATTTTGAAACA
39199 TCATTTTTATATTTTGAAA
1 TCATTTTTATATTTTGAAA
39218 ATAGAGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.53
Consensus pattern (21 bp):
TCATTTTTATATTTTGAAACA
Found at i:41241 original size:65 final size:64
Alignment explanation
Indices: 41134--41314 Score: 190
Period size: 65 Copynumber: 2.8 Consensus size: 64
41124 TTGGACTCCT
* * *
41134 AGTGCATCGGTGCACT-AAGAGTGCATCGATGCATGAAGTGCATTCGATGTTT-CA-AAAATAGC
1 AGTGCATCGATGCA-TGGAGAGTGCATCGATGCAT-AAATGCATTCGATGTTTGCATAAAA-A-C
*
41196 CTG
62 CCG
** * **
41199 AGTGCATCGATGCAT-GACTTGTGCATCGATGCATCAAATGCATTCGATGTTTGTATTTAAACCC
1 AGTGCATCGATGCATGGA-GAGTGCATCGATGCAT-AAATGCATTCGATGTTTGCATAAAAACCC
41263 G
64 G
41264 AGTGCATCGATGCATGGAGAGTGCATCGATGCATAGAATGCATTCGATGTT
1 AGTGCATCGATGCATGGAGAGTGCATCGATGCATA-AATGCATTCGATGTT
41315 CAATTAATTC
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
64 3 0.03
65 90 0.91
66 4 0.04
67 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (64 bp):
AGTGCATCGATGCATGGAGAGTGCATCGATGCATAAATGCATTCGATGTTTGCATAAAAACCCG
Found at i:41657 original size:23 final size:23
Alignment explanation
Indices: 41607--41651 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
41597 TGTCTATTTT
*
41607 ATTATATAAGTGATACCTATTAC
1 ATTATATAAGTGATACCTAATAC
*
41630 ATTATATAAGTGCTACCTAATA
1 ATTATATAAGTGATACCTAATA
41652 TGTTATTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTATATAAGTGATACCTAATAC
Found at i:44479 original size:21 final size:21
Alignment explanation
Indices: 44428--44480 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
44418 ATTATAACTA
44428 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
44449 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
44470 TCGCAATGCGA
1 TCGCAATGCGA
44481 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:44500 original size:41 final size:41
Alignment explanation
Indices: 44470--44645 Score: 162
Period size: 41 Copynumber: 4.3 Consensus size: 41
44460 TTTTCCCAAT
*
44470 TCGCAATGCGAATAAGTAAATCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAATGCGAATTTGCAAAA
** * *
44511 TCGCAATGCGAATTTGGAAAATCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAA-TAAGTAAATCGCAATGCGAATTTGCAAAA
** * * * * * *
44553 TCGCAATATG-AT-ACTGACTATCGCAACGCG-ATAATACAAAT
1 TCGCAATGCGAATAAGT-A-AATCGCAATGCGAAT-TTGCAAAA
44594 TCGCAATGCGAATAAGTAAATCGCAATGCGAATTTAG-AAAA
1 TCGCAATGCGAATAAGTAAATCGCAATGCGAATTT-GCAAAA
44635 TCGCAATGCGA
1 TCGCAATGCGA
44646 TACTGACTAT
Statistics
Matches: 105, Mismatches: 22, Indels: 16
0.73 0.15 0.11
Matches are distributed among these distances:
40 4 0.04
41 60 0.57
42 39 0.37
43 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAATGCGAATTTGCAAAA
Found at i:44513 original size:21 final size:21
Alignment explanation
Indices: 44470--44645 Score: 155
Period size: 21 Copynumber: 8.5 Consensus size: 21
44460 TTTTCCCAAT
* *
44470 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTTAGAAAA
*
44490 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTAGAAAA
*
44511 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTAGAAAA
*
44532 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTAGAAAA
** * **
44553 TCGCAATATG-ATACT-GACTA
1 TCGCAATGCGAAT-TTAGAAAA
* * * *
44573 TCGCAACGCG-ATAATACAAAT
1 TCGCAATGCGAAT-TTAGAAAA
* *
44594 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTTAGAAAA
44614 TCGCAATGCGAATTTAGAAAA
1 TCGCAATGCGAATTTAGAAAA
44635 TCGCAATGCGA
1 TCGCAATGCGA
44646 TACTGACTAT
Statistics
Matches: 127, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
20 43 0.34
21 83 0.65
22 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTTAGAAAA
Found at i:44638 original size:82 final size:83
Alignment explanation
Indices: 44507--44686 Score: 281
Period size: 82 Copynumber: 2.2 Consensus size: 83
44497 GCGAATTTGG
** * *
44507 AAAATCGCAATGCGAATTTGGAAAATCGCAATGCGAATTTGGAAAATCGCAATATGATACTGACT
1 AAAATCGCAATGCGAATTAAGAAAATCGCAATGCGAATTTAGAAAATCGCAATACGATACTGACT
44572 ATCGCAACGCGATAATAC
66 ATCGCAACGCGATAATAC
* * *
44590 AAATTCGCAATGCGAA-TAAGTAAATCGCAATGCGAATTTAGAAAATCGCAATGCGATACTGACT
1 AAAATCGCAATGCGAATTAAGAAAATCGCAATGCGAATTTAGAAAATCGCAATACGATACTGACT
44654 ATCGCAACGCGATAATAC
66 ATCGCAACGCGATAATAC
*
44672 AAAATCGCAACGCGA
1 AAAATCGCAATGCGA
44687 TATTGACTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 73 0.83
83 15 0.17
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (83 bp):
AAAATCGCAATGCGAATTAAGAAAATCGCAATGCGAATTTAGAAAATCGCAATACGATACTGACT
ATCGCAACGCGATAATAC
Found at i:44658 original size:41 final size:41
Alignment explanation
Indices: 44489--44694 Score: 161
Period size: 41 Copynumber: 5.0 Consensus size: 41
44479 GAATAAGTAA
* * **
44489 ATCGCAATGCGAATTTGGAAAATCGCAATGCGA-ATTTGGAAA
1 ATCGCAATGCGAATTTAGAAAATCGCAATGCGATA-CT-GACT
* **
44531 ATCGCAATGCGAATTTGGAAAATCGCAATATGATACTGACT
1 ATCGCAATGCGAATTTAGAAAATCGCAATGCGATACTGACT
* * * * * *
44572 ATCGCAACGCG-ATAATACAAATTCGCAATGCGAATA-AGTA-A
1 ATCGCAATGCGAAT-TTAGAAAATCGCAATGCG-ATACTG-ACT
44613 ATCGCAATGCGAATTTAGAAAATCGCAATGCGATACTGACT
1 ATCGCAATGCGAATTTAGAAAATCGCAATGCGATACTGACT
* * * * *
44654 ATCGCAACGCG-ATAATACAAAATCGCAACGCGATATTGACT
1 ATCGCAATGCGAAT-TTAGAAAATCGCAATGCGATACTGACT
44695 TTCGAAACGC
Statistics
Matches: 131, Mismatches: 25, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
40 8 0.06
41 84 0.64
42 38 0.29
43 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (41 bp):
ATCGCAATGCGAATTTAGAAAATCGCAATGCGATACTGACT
Found at i:44659 original size:20 final size:20
Alignment explanation
Indices: 44634--44768 Score: 128
Period size: 20 Copynumber: 6.7 Consensus size: 20
44624 AATTTAGAAA
*
44634 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
44654 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
44675 ATCGCAACGCGATATTGACT
1 ATCGCAACGCGATACTGACT
* * *
44695 TTCGAAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* *
44715 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* * *
44735 TTCGCAACGAGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
44755 ATCGCAACGAGATA
1 ATCGCAACGCGATA
44769 ATACAGAATC
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.02
20 80 0.81
21 15 0.15
22 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:44680 original size:21 final size:21
Alignment explanation
Indices: 44572--44688 Score: 84
Period size: 21 Copynumber: 5.7 Consensus size: 21
44562 GATACTGACT
44572 ATCGCAACGCGATAATACAAA
1 ATCGCAACGCGATAATACAAA
* *
44593 TTCGCAATGCG--AATA-AGTAA
1 ATCGCAACGCGATAATACA--AA
* * *
44613 ATCGCAATGCGA-ATTTAGAAA
1 ATCGCAACGCGATA-ATACAAA
* * *
44634 ATCGCAATGCGATACTGAC--T
1 ATCGCAACGCGATAAT-ACAAA
44654 ATCGCAACGCGATAATACAAA
1 ATCGCAACGCGATAATACAAA
44675 ATCGCAACGCGATA
1 ATCGCAACGCGATA
44689 TTGACTTTCG
Statistics
Matches: 77, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
18 1 0.01
19 6 0.08
20 26 0.34
21 39 0.51
22 4 0.05
23 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGATAATACAAA
Found at i:45319 original size:14 final size:15
Alignment explanation
Indices: 45300--45328 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
45290 TCATTTGACT
45300 ATCGCAACG-GAAAA
1 ATCGCAACGCGAAAA
45314 ATCGCAACGCGAAAA
1 ATCGCAACGCGAAAA
45329 TGACTATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.24, G:0.21, T:0.07
Consensus pattern (15 bp):
ATCGCAACGCGAAAA
Found at i:45339 original size:20 final size:20
Alignment explanation
Indices: 45314--45369 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
45304 CAACGGAAAA
45314 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
45334 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGACT
*
45354 ATCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
45370 CGCAACGTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.41, C:0.23, G:0.21, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:47004 original size:41 final size:41
Alignment explanation
Indices: 46959--47050 Score: 107
Period size: 41 Copynumber: 2.2 Consensus size: 41
46949 CCTCTTCAAC
*
46959 GATGACAGTGGCCTCTTGAACG-GTG-GGGGGAACTCTTGAGG
1 GATGACAG-GGCCTCTTGAACGAGTGAAGGGG-ACTCTTGAGG
* * *
47000 GATGATAAGGGCCTCTTGAATGATTGAAGGGGACTCTTGAGG
1 GATGA-CAGGGCCTCTTGAACGAGTGAAGGGGACTCTTGAGG
47042 GATGACAGG
1 GATGACAGG
47051 TGAGTCGAGC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
41 20 0.47
42 19 0.44
43 4 0.09
ACGTcount: A:0.24, C:0.14, G:0.39, T:0.23
Consensus pattern (41 bp):
GATGACAGGGCCTCTTGAACGAGTGAAGGGGACTCTTGAGG
Found at i:47017 original size:21 final size:20
Alignment explanation
Indices: 46990--47046 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
46980 GGTGGGGGGA
46990 ACTCTTGAGGGATGATAAGGG
1 ACTCTTGAGGGATGA-AAGGG
* ** *
47011 CCTCTTGAATGATTGAAGGGG
1 ACTCTTGAGGGA-TGAAAGGG
47032 ACTCTTGAGGGATGA
1 ACTCTTGAGGGATGA
47047 CAGGTGAGTC
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
20 3 0.11
21 22 0.79
22 3 0.11
ACGTcount: A:0.26, C:0.12, G:0.35, T:0.26
Consensus pattern (20 bp):
ACTCTTGAGGGATGAAAGGG
Found at i:47427 original size:20 final size:20
Alignment explanation
Indices: 47363--47463 Score: 114
Period size: 20 Copynumber: 5.0 Consensus size: 20
47353 GAATAATAGT
** *
47363 TTACTTTCGCAATACGAAAT
1 TTACTTTCGCAACGCGAAAA
*
47383 TTACTTTCGCAACGCGAAAT
1 TTACTTTCGCAACGCGAAAA
47403 TTACTTTCGCAACGCGAAAA
1 TTACTTTCGCAACGCGAAAA
* *
47423 ATACTATT-GCAACGCGGAAA
1 TTACT-TTCGCAACGCGAAAA
* *
47443 TTACTATCGCAACGCGGAAA
1 TTACTTTCGCAACGCGAAAA
47463 T
1 T
47464 GGCTATCGCA
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
19 1 0.01
20 69 0.96
21 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
TTACTTTCGCAACGCGAAAA
Found at i:47469 original size:20 final size:20
Alignment explanation
Indices: 47389--47474 Score: 86
Period size: 20 Copynumber: 4.3 Consensus size: 20
47379 AAATTTACTT
* *
47389 TCGCAACGC-GAAATTTACTT
1 TCGCAACGCGGAAA-TGACTA
*
47409 TCGCAACGCGAAAAAT-ACTA
1 TCGCAACGCG-GAAATGACTA
* *
47429 TTGCAACGCGGAAATTACTA
1 TCGCAACGCGGAAATGACTA
*
47449 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
47469 TCGCAA
1 TCGCAA
47475 TGCGAAATAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
19 4 0.07
20 48 0.86
21 1 0.02
22 3 0.05
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:47490 original size:19 final size:19
Alignment explanation
Indices: 47468--47522 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 19
47458 GGAAATGGCT
47468 ATCGCAATGCGAAATAAAA
1 ATCGCAATGCGAAATAAAA
*
47487 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATAAAA
*
47501 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATAAAA
47520 ATC
1 ATC
47523 ACAACGACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 10 0.34
15 1 0.03
16 2 0.07
17 2 0.07
18 1 0.03
19 13 0.45
ACGTcount: A:0.49, C:0.20, G:0.16, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATAAAA
Found at i:47510 original size:33 final size:33
Alignment explanation
Indices: 47468--47558 Score: 128
Period size: 33 Copynumber: 2.8 Consensus size: 33
47458 GGAAATGGCT
47468 ATCGCAATGCGAAATAAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATAAAAATCGCAACGACAAA
* *
47501 ATCGCAATGCGAAATGAAAATCACAACGACAAA
1 ATCGCAATGCGAAATAAAAATCGCAACGACAAA
* * * *
47534 ATCGTAACGCGAAACACAAATCGCA
1 ATCGCAATGCGAAATAAAAATCGCA
47559 TTACGATTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.49, C:0.23, G:0.15, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATAAAAATCGCAACGACAAA
Found at i:47584 original size:19 final size:19
Alignment explanation
Indices: 47562--47637 Score: 54
Period size: 19 Copynumber: 4.2 Consensus size: 19
47552 AATCGCATTA
47562 CGATTTTCATTTCGCGTTG
1 CGATTTTCATTTCGCGTTG
* *
47581 CGA-TTT--TGT--CGTTA
1 CGATTTTCATTTCGCGTTG
*
47595 CGATTTTCATTTCGCATTG
1 CGATTTTCATTTCGCGTTG
***
47614 CGATAGCCATTTCCGCGTTG
1 CGATTTTCATTT-CGCGTTG
47634 CGAT
1 CGAT
47638 AGTAATTTTC
Statistics
Matches: 42, Mismatches: 9, Indels: 11
0.68 0.15 0.18
Matches are distributed among these distances:
14 7 0.17
15 3 0.07
16 2 0.05
17 2 0.05
18 3 0.07
19 15 0.36
20 10 0.24
ACGTcount: A:0.14, C:0.22, G:0.21, T:0.42
Consensus pattern (19 bp):
CGATTTTCATTTCGCGTTG
Found at i:47636 original size:20 final size:19
Alignment explanation
Indices: 47602--47639 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
47592 TTACGATTTT
47602 CATTTCGCATTGCGATAGC
1 CATTTCGCATTGCGATAGC
*
47621 CATTTCCGCGTTGCGATAG
1 CATTT-CGCATTGCGATAG
47640 TAATTTTCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.32
Consensus pattern (19 bp):
CATTTCGCATTGCGATAGC
Found at i:48247 original size:18 final size:19
Alignment explanation
Indices: 48200--48247 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 19
48190 GGTCGATCAA
48200 GTGATGGCTCTGGGGTGAG
1 GTGATGGCTCTGGGGTGAG
**
48219 GTGATAACTCT-GGGTGAG
1 GTGATGGCTCTGGGGTGAG
48237 GTGATGGCTCT
1 GTGATGGCTCT
48248 CGAAGTGGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.15, C:0.12, G:0.44, T:0.29
Consensus pattern (19 bp):
GTGATGGCTCTGGGGTGAG
Found at i:49615 original size:20 final size:20
Alignment explanation
Indices: 49567--49625 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
49557 AATAGTTTCT
* *
49567 GAAAATGAAAATCGCAACAC
1 GAAAATGACAATCGCAACGC
49587 GAAAATGACAATCGCAACGC
1 GAAAATGACAATCGCAACGC
** *
49607 GAATTTGACTATCGCAACG
1 GAAAATGACAATCGCAACG
49626 AGAGAATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.15
Consensus pattern (20 bp):
GAAAATGACAATCGCAACGC
Found at i:49915 original size:22 final size:22
Alignment explanation
Indices: 49888--49931 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
49878 GATGGAGATA
49888 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
49910 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
49932 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:50182 original size:20 final size:20
Alignment explanation
Indices: 50118--50190 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
50108 GATTATGTAT
*
50118 TATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
** **
50138 TATCTTGTTGCGAAAGAAAG
1 TATCGCGTTGCGAAAGTCAG
50158 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
50178 TATCGCATTGCGA
1 TATCGCGTTGCGA
50191 TTTTCCAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:50224 original size:20 final size:21
Alignment explanation
Indices: 50180--50231 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
50170 AAAGTCAGTA
*
50180 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
50201 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
50221 TCGCATTGCGA
1 TCGCATTGCGA
50232 ATTGGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:50273 original size:21 final size:22
Alignment explanation
Indices: 50221--50273 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
50211 ATTTACTTAT
50221 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
50242 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
50263 TCGCATTGCGA
1 TCGCATTGCGA
50274 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:51211 original size:21 final size:21
Alignment explanation
Indices: 51173--51212 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51163 AGGGTTTGTG
**
51173 ATTTAGGGTTTAGGGTTTAAT
1 ATTTAGGGTTTAAAGTTTAAT
*
51194 ATTTATGGTTTAAAGTTTA
1 ATTTAGGGTTTAAAGTTTA
51213 GAGTTTAGGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (21 bp):
ATTTAGGGTTTAAAGTTTAAT
Found at i:51320 original size:15 final size:15
Alignment explanation
Indices: 51313--51349 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
51303 ATAGTTTATA
51313 TATATATATATAGGT
1 TATATATATATAGGT
*
51328 TATATATATATAGTT
1 TATATATATATAGGT
51343 TATATAT
1 TATATAT
51350 GCTATACGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (15 bp):
TATATATATATAGGT
Found at i:51324 original size:19 final size:19
Alignment explanation
Indices: 51300--51339 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
51290 TAATTTACTT
*
51300 TATATAGTTTATATATATA
1 TATATAGGTTATATATATA
51319 TATATAGGTTATATATATA
1 TATATAGGTTATATATATA
51338 TA
1 TA
51340 GTTTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (19 bp):
TATATAGGTTATATATATA
Found at i:51739 original size:7 final size:7
Alignment explanation
Indices: 51723--51808 Score: 82
Period size: 7 Copynumber: 12.3 Consensus size: 7
51713 TCTATTCATA
51723 TTAGGGT
1 TTAGGGT
*
51730 TTATGGT
1 TTAGGGT
*
51737 TTATGGT
1 TTAGGGT
**
51744 TTATAGT
1 TTAGGGT
51751 TTAGGGT
1 TTAGGGT
*
51758 TTAAGGT
1 TTAGGGT
51765 TTAGGGT
1 TTAGGGT
**
51772 TTAATGT
1 TTAGGGT
51779 TTAGGGT
1 TTAGGGT
**
51786 TTAAAGT
1 TTAGGGT
51793 TTAGGGT
1 TTAGGGT
*
51800 TTAAGGT
1 TTAGGGT
51807 TT
1 TT
51809 CTATAAACTA
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 64 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (7 bp):
TTAGGGT
Found at i:51744 original size:14 final size:14
Alignment explanation
Indices: 51723--51808 Score: 120
Period size: 14 Copynumber: 6.1 Consensus size: 14
51713 TCTATTCATA
*
51723 TTAGGGTTTATGGT
1 TTAGGGTTTAAGGT
*
51737 TTATGGTTTATA-GT
1 TTAGGGTTTA-AGGT
51751 TTAGGGTTTAAGGT
1 TTAGGGTTTAAGGT
*
51765 TTAGGGTTTAATGT
1 TTAGGGTTTAAGGT
*
51779 TTAGGGTTTAAAGT
1 TTAGGGTTTAAGGT
51793 TTAGGGTTTAAGGT
1 TTAGGGTTTAAGGT
51807 TT
1 TT
51809 CTATAAACTA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
13 1 0.02
14 63 0.98
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (14 bp):
TTAGGGTTTAAGGT
Found at i:51903 original size:15 final size:15
Alignment explanation
Indices: 51883--51934 Score: 86
Period size: 15 Copynumber: 3.4 Consensus size: 15
51873 TAATTTACTT
51883 TATATAGTTTATATA
1 TATATAGTTTATATA
*
51898 TATATAGGTTATATA
1 TATATAGTTTATATA
51913 TATATAGTTTATATA
1 TATATAGTTTATATA
51928 TACTATA
1 TA-TATA
51935 CATGGTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (15 bp):
TATATAGTTTATATA
Found at i:51976 original size:22 final size:22
Alignment explanation
Indices: 51951--51993 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
51941 TTATACATAC
* *
51951 ATATTATATAAAATTATTTAAT
1 ATATTATAAAAAATAATTTAAT
*
51973 ATATTTTAAAAAATAATTTAA
1 ATATTATAAAAAATAATTTAA
51994 ATGTAAATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATATTATAAAAAATAATTTAAT
Found at i:52340 original size:21 final size:21
Alignment explanation
Indices: 52316--52368 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
52306 GGGTTTGTGG
*
52316 TTTATGGTTTACGGTTTAATA
1 TTTAGGGTTTACGGTTTAATA
* *
52337 TTTAGGGTTTAGGGTTTAATG
1 TTTAGGGTTTACGGTTTAATA
*
52358 TTTAGGATTTA
1 TTTAGGGTTTA
52369 AAGTTTAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.23, C:0.02, G:0.25, T:0.51
Consensus pattern (21 bp):
TTTAGGGTTTACGGTTTAATA
Found at i:52374 original size:21 final size:21
Alignment explanation
Indices: 52329--52388 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 21
52319 ATGGTTTACG
* * **
52329 GTTTAATATTTAGGGTTTAGG
1 GTTTAATGTTTAGGATTTAAA
52350 GTTTAATGTTTAGGATTTAAA
1 GTTTAATGTTTAGGATTTAAA
* *
52371 GTTTAAGGTTTAAGATTT
1 GTTTAATGTTTAGGATTT
52389 CTATAAACTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.48
Consensus pattern (21 bp):
GTTTAATGTTTAGGATTTAAA
Found at i:52383 original size:7 final size:7
Alignment explanation
Indices: 52314--52384 Score: 54
Period size: 7 Copynumber: 10.1 Consensus size: 7
52304 CAGGGTTTGT
*
52314 GGTTTAT
1 GGTTTAA
*
52321 GGTTTAC
1 GGTTTAA
52328 GGTTTAA
1 GGTTTAA
** *
52335 TATTTAG
1 GGTTTAA
*
52342 GGTTTAG
1 GGTTTAA
52349 GGTTTAA
1 GGTTTAA
*
52356 TGTTT-A
1 GGTTTAA
52362 GGATTTAA
1 GG-TTTAA
*
52370 AGTTTAA
1 GGTTTAA
52377 GGTTTAA
1 GGTTTAA
52384 G
1 G
52385 ATTTCTATAA
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
6 2 0.04
7 46 0.92
8 2 0.04
ACGTcount: A:0.25, C:0.01, G:0.27, T:0.46
Consensus pattern (7 bp):
GGTTTAA
Found at i:52483 original size:15 final size:15
Alignment explanation
Indices: 52463--52509 Score: 85
Period size: 15 Copynumber: 3.1 Consensus size: 15
52453 TAATTTACTT
52463 TATATAGTTTATATA
1 TATATAGTTTATATA
*
52478 TATATAGGTTATATA
1 TATATAGTTTATATA
52493 TATATAGTTTATATA
1 TATATAGTTTATATA
52508 TA
1 TA
52510 CTATGCATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (15 bp):
TATATAGTTTATATA
Found at i:52831 original size:13 final size:13
Alignment explanation
Indices: 52813--52837 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52803 TACATTAGTT
52813 TACATAAGCCCAA
1 TACATAAGCCCAA
52826 TACATAAGCCCA
1 TACATAAGCCCA
52838 CTCTTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.08, T:0.16
Consensus pattern (13 bp):
TACATAAGCCCAA
Found at i:52909 original size:21 final size:21
Alignment explanation
Indices: 52883--52936 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
52873 TCCGTTTATA
52883 TTAGGGTTTAAGGTTCATGGT
1 TTAGGGTTTAAGGTTCATGGT
* *
52904 TTAGGGTTTAATGTTTATGGT
1 TTAGGGTTTAAGGTTCATGGT
**
52925 TTAAAGTTTAAG
1 TTAGGGTTTAAG
52937 ATTTAGGTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.02, G:0.28, T:0.46
Consensus pattern (21 bp):
TTAGGGTTTAAGGTTCATGGT
Found at i:52911 original size:7 final size:7
Alignment explanation
Indices: 52887--52946 Score: 50
Period size: 7 Copynumber: 8.7 Consensus size: 7
52877 TTTATATTAG
52887 GGTTTAA
1 GGTTTAA
* *
52894 GGTTCAT
1 GGTTTAA
*
52901 GGTTTAG
1 GGTTTAA
52908 GGTTTAA
1 GGTTTAA
* *
52915 TGTTTAT
1 GGTTTAA
52922 GGTTTAA
1 GGTTTAA
*
52929 AGTTTAA
1 GGTTTAA
*
52936 GATTT-A
1 GGTTTAA
52942 GGTTT
1 GGTTT
52947 CTAAATTAAT
Statistics
Matches: 40, Mismatches: 13, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
6 5 0.12
7 35 0.88
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (7 bp):
GGTTTAA
Found at i:52914 original size:580 final size:579
Alignment explanation
Indices: 51173--52946 Score: 3005
Period size: 580 Copynumber: 3.1 Consensus size: 579
51163 AGGGTTTGTG
* *
51173 ATTTAGGGTTTAGGGTTTAATATTTATGGTTTAAAGTTT-AGAGTTTAGGATTTCTATAAACTAT
1 ATTTAGGGTTTAGGGTTTAATGTTTA-GGTTTAAAGTTTAAG-GTTTAAGATTTCTATAAACTAT
51237 ATACTTTATTACTTTATATAGTTTATGCGTAGTGTTTCTATAAACTATATAAGTAATTTACTTTA
64 ATACTTTATTACTTTATATAGTTTATGCGTAGTGTTTCTATAAACTATATAAGTAATTTACTTTA
* *
51302 TATAGTTTATATATATATATATAGGTTATATATATATAGTTTATATATGCTATACGTGGTTTATA
129 TATAG--T-T-TATATATATATAGGTTATATATATATAGTTTATATATACTATACATGGTTTATA
* * * *
51367 AATACATATTATATAAAATTACTTAA-AAAATTTAAAAAATAATTTAAATGTAAAATATATAAAA
190 CATACATATTATATAAAATTATTTAATAAATTTTAAAAAATAATTTAAATGTAAATTATATAAAA
* * * *
51431 TATGATTAATTAAGTGTTAAATAATTAGTATATCACATTGCATATTATATGGTTCATAAATAGTA
255 CATGATTAATTAGGTGTTAAATAATTAGTATGTCACATTGCATATTATATGGTTCATATATAGTA
51496 GTACATGTCATATTAATTTCATTTGCATAATTAGTATTTTAGTTGCATGTTAGGTTAATTCACAT
320 GTACATGTCATATTAATTTCATTTGCATAATTAGTATTTTAGTTGCATGTTAGGTTAATTCACAT
51561 TAATAACCCATTTATTTTGTTGTTATGAATAAGTAAAAATAAAACCCAAAAATAAGTCCATTTGC
385 TAATAACCCATTTATTTTGTTGTTATGAATAAGTAAAAATAAAACCCAAAAATAAGTCCATTTGC
*
51626 ATTAGTGCTAGTTCATTTACATTAATTTACATAGGCCCAATATATAAGTCCACTCTTTTATTACA
450 ATTAGTGCTAGTTCATTTACATTAATTTACATAGGCCCAATATATAAGCCCACTCTTTTATTACA
* ** **
51691 AATATATAGGCATTAGTGTTAGTCTATTCATATTAGGGTTTATGGTTTATGGTTTATAGTTTAGG
515 AATATATAGGCATTAGTGTTAGTCTATTTATATTAGGGTTTATGGTTTATGGTTTACGGTTTAAT
* * * *
51756 GTTTAAGGTTTAGGGTTTAATGTTTAGGGTTTAAAGTTTAGGGTTTAAGGTTTCTATAAACTATA
1 ATTTAGGGTTTAGGGTTTAATGTTTA-GGTTTAAAGTTTAAGGTTTAAGATTTCTATAAACTATA
51821 TACTTTATTACTTTATATAGTTTATGCGTAGTGTTTCTATAAACTATATAAGTAATTTACTTTAT
65 TACTTTATTACTTTATATAGTTTATGCGTAGTGTTTCTATAAACTATATAAGTAATTTACTTTAT
51886 ATAGTTTATATATATATAGGTTATATATATATAGTTTATATATACTATACATGGTTTATACATAC
130 ATAGTTTATATATATATAGGTTATATATATATAGTTTATATATACTATACATGGTTTATACATAC
*
51951 ATATTATATAAAATTATTTAATATATTTTAAAAAATAATTTAAATGTAAATTATATAAAACATGA
195 ATATTATATAAAATTATTTAATAAATTTTAAAAAATAATTTAAATGTAAATTATATAAAACATGA
*
52016 TTAATTAGGTGTTAAATAATTAGTATGTCTCATTGCATATTATATGGTTCATATATAGTAGTACA
260 TTAATTAGGTGTTAAATAATTAGTATGTCACATTGCATATTATATGGTTCATATATAGTAGTACA
52081 TGTCATATTAATTTCATTTGCATAATTAGTATTTTAGTTGCATGTTAGGTTAATTCACATTAATA
325 TGTCATATTAATTTCATTTGCATAATTAGTATTTTAGTTGCATGTTAGGTTAATTCACATTAATA
*
52146 ACCCATTTATTTTGTTGTTATGAATAAGTAAAAATAAAACCCAAAAATAAATCCATTTGCATTAG
390 ACCCATTTATTTTGTTGTTATGAATAAGTAAAAATAAAACCCAAAAATAAGTCCATTTGCATTAG
52211 TGCTAGTTCATTTACATTAATTTACATAGGCCCAATATATAAGCCCACTCTTTTATTACAAATAT
455 TGCTAGTTCATTTACATTAATTTACATAGGCCCAATATATAAGCCCACTCTTTTATTACAAATAT
* * *
52276 ATAGGCATTAGTGTTAGTATATTTATATCAGGGTTTGTGGTTTATGGTTTACGGTTTAAT
520 ATAGGCATTAGTGTTAGTCTATTTATATTAGGGTTTATGGTTTATGGTTTACGGTTTAAT
52336 ATTTAGGGTTTAGGGTTTAATGTTTAGGATTTAAAGTTTAAGGTTTAAGATTTCTATAAACTATA
1 ATTTAGGGTTTAGGGTTTAATGTTTAGG-TTTAAAGTTTAAGGTTTAAGATTTCTATAAACTATA
52401 TACTTTATTACTTTATATAGTTTATGCGTAGTGTTTCTATAAACTATATAAGTAATTTACTTTAT
65 TACTTTATTACTTTATATAGTTTATGCGTAGTGTTTCTATAAACTATATAAGTAATTTACTTTAT
*
52466 ATAGTTTATATATATATAGGTTATATATATATAGTTTATATATACTATGCATGGTTTATACATAC
130 ATAGTTTATATATATATAGGTTATATATATATAGTTTATATATACTATACATGGTTTATACATAC
52531 ATATTATATAAAATTATTTAATAAATTTTAAAAAATAATTTAAATGTAAATTATATAAAACATGA
195 ATATTATATAAAATTATTTAATAAATTTTAAAAAATAATTTAAATGTAAATTATATAAAACATGA
52596 TTAATTAGGTGTTAAATAATTAGTATGTCACATTGCATATTATATGGTTCATATATAGTAGTACA
260 TTAATTAGGTGTTAAATAATTAGTATGTCACATTGCATATTATATGGTTCATATATAGTAGTACA
* *
52661 TGTTATATTAATTTCATTTGCATAATTAGTATTTTATTTGCATGTTAGGTTAATTCACATTAATA
325 TGTCATATTAATTTCATTTGCATAATTAGTATTTTAGTTGCATGTTAGGTTAATTCACATTAATA
* * * *
52726 ACCTATTTATTTTGTTGTTATGAATAAGTAATAATAAAACTCAAAAATAAGTCCATTTGCATTAC
390 ACCCATTTATTTTGTTGTTATGAATAAGTAAAAATAAAACCCAAAAATAAGTCCATTTGCATTAG
* * * *
52791 TGCTAGTCCATTTACATTAGTTTACATAAGCCCAATACATAAGCCCACTCTTTTATTACAAATAT
455 TGCTAGTTCATTTACATTAATTTACATAGGCCCAATATATAAGCCCACTCTTTTATTACAAATAT
* ** * * *
52856 ATAGGCATTAGTGCTAGTCCGTTTATATTAGGGTTTAAGGTTCATGGTTTAGGGTTTAAT
520 ATAGGCATTAGTGTTAGTCTATTTATATTAGGGTTTATGGTTTATGGTTTACGGTTTAAT
* * **
52916 GTTTATGGTTTAAAGTTTAA-GATTTAGGTTT
1 ATTTAGGGTTTAGGGTTTAATG-TTTAGGTTT
52947 CTAAATTAAT
Statistics
Matches: 1127, Mismatches: 60, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
579 82 0.07
580 918 0.81
581 1 0.00
583 125 0.11
584 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (579 bp):
ATTTAGGGTTTAGGGTTTAATGTTTAGGTTTAAAGTTTAAGGTTTAAGATTTCTATAAACTATAT
ACTTTATTACTTTATATAGTTTATGCGTAGTGTTTCTATAAACTATATAAGTAATTTACTTTATA
TAGTTTATATATATATAGGTTATATATATATAGTTTATATATACTATACATGGTTTATACATACA
TATTATATAAAATTATTTAATAAATTTTAAAAAATAATTTAAATGTAAATTATATAAAACATGAT
TAATTAGGTGTTAAATAATTAGTATGTCACATTGCATATTATATGGTTCATATATAGTAGTACAT
GTCATATTAATTTCATTTGCATAATTAGTATTTTAGTTGCATGTTAGGTTAATTCACATTAATAA
CCCATTTATTTTGTTGTTATGAATAAGTAAAAATAAAACCCAAAAATAAGTCCATTTGCATTAGT
GCTAGTTCATTTACATTAATTTACATAGGCCCAATATATAAGCCCACTCTTTTATTACAAATATA
TAGGCATTAGTGTTAGTCTATTTATATTAGGGTTTATGGTTTATGGTTTACGGTTTAAT
Found at i:52941 original size:21 final size:20
Alignment explanation
Indices: 52888--52946 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
52878 TTATATTAGG
* **
52888 GTTTAAGGTTCATGGTTTAGG
1 GTTTAA-GTTTATGGTTTAAA
52909 GTTTAATGTTTATGGTTTAAA
1 GTTTAA-GTTTATGGTTTAAA
52930 GTTTAAGATTTA-GGTTT
1 GTTTAAG-TTTATGGTTT
52947 CTAAATTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 6 0.18
21 27 0.82
ACGTcount: A:0.24, C:0.02, G:0.25, T:0.49
Consensus pattern (20 bp):
GTTTAAGTTTATGGTTTAAA
Found at i:55520 original size:20 final size:20
Alignment explanation
Indices: 55497--55667 Score: 141
Period size: 20 Copynumber: 8.6 Consensus size: 20
55487 GAGGAACATC
*
55497 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CAT
* *
55517 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCAT
* *
55537 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCAT
* *
55557 AAATCGCAACGCGTTTCCGT
1 AAATCGCAACGCGTATCCAT
* *
55577 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCAT
* *
55597 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCAT
* * **
55617 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCAT
* *
55637 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCAT
55657 AAATCGCAACG
1 AAATCGCAACG
55668 AGAATCTGTA
Statistics
Matches: 130, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
19 1 0.01
20 127 0.98
21 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCAT
Found at i:55560 original size:40 final size:40
Alignment explanation
Indices: 55497--55686 Score: 208
Period size: 40 Copynumber: 4.8 Consensus size: 40
55487 GAGGAACATC
* *
55497 AAATCGCAACGCGAA-CACATAAATCGCAATGCG-T-ATCCGT
1 AAATCGCAACGAGAATC-CGTAAATCGCAA--CGATAATCCGT
* * * *
55537 AAATCGCAACGTGTATCCGTAAATCGCAACGCGT-TTCCGT
1 AAATCGCAACGAGAATCCGTAAATCGCAACG-ATAATCCGT
* * *
55577 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGTAAATCGCAACGATAATCCGT
*
55617 AAATCGCAACGAGAATCTGTAAATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGTAAATCGCAACGATAATCCGT
* *
55657 AAATCGCAACGAGAATCTGTAAATCACAAC
1 AAATCGCAACGAGAATCCGTAAATCGCAAC
55687 ACTGAAATTT
Statistics
Matches: 133, Mismatches: 13, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.02
39 1 0.01
40 129 0.97
41 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (40 bp):
AAATCGCAACGAGAATCCGTAAATCGCAACGATAATCCGT
Found at i:55591 original size:60 final size:60
Alignment explanation
Indices: 55497--55686 Score: 215
Period size: 60 Copynumber: 3.2 Consensus size: 60
55487 GAGGAACATC
* * * *
55497 AAATCGCAACGCGAA-CACATAAATCGCAATGCGTATCCGTAAATCGCAACGTGTATCCGT
1 AAATCGCAACGAGAATC-CGTAAATCGCAACGCGTATCCGTAAATCGCAACGTGAATCCGT
* ** *
55557 AAATCGCAACGCGTTTCCGTATATCGCAACGCGTATCCGTAAATCGCAACGAT-AATCCGT
1 AAATCGCAACGAGAATCCGTAAATCGCAACGCGTATCCGTAAATCGCAACG-TGAATCCGT
* * * *
55617 AAATCGCAACGAGAATCTGTAAATCGCAACG-ATAATCCGTAAATCGCAACGAGAATCTGT
1 AAATCGCAACGAGAATCCGTAAATCGCAACGCGT-ATCCGTAAATCGCAACGTGAATCCGT
*
55677 AAATCACAAC
1 AAATCGCAAC
55687 ACTGAAATTT
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
59 1 0.01
60 108 0.97
61 2 0.02
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (60 bp):
AAATCGCAACGAGAATCCGTAAATCGCAACGCGTATCCGTAAATCGCAACGTGAATCCGT
Found at i:55668 original size:20 final size:20
Alignment explanation
Indices: 55531--55686 Score: 174
Period size: 20 Copynumber: 7.8 Consensus size: 20
55521 CGCAATGCGT
*
55531 ATCCGTAAATCGCAACG-TGT
1 ATCCGTAAATCGCAACGAT-A
*
55551 ATCCGTAAATCGCAACGCGT-
1 ATCCGTAAATCGCAACG-ATA
* * *
55571 TTCCGTATATCGCAACGCGT-
1 ATCCGTAAATCGCAACG-ATA
55591 ATCCGTAAATCGCAACGATA
1 ATCCGTAAATCGCAACGATA
*
55611 ATCCGTAAATCGCAACGAGA
1 ATCCGTAAATCGCAACGATA
*
55631 ATCTGTAAATCGCAACGATA
1 ATCCGTAAATCGCAACGATA
*
55651 ATCCGTAAATCGCAACGAGA
1 ATCCGTAAATCGCAACGATA
* *
55671 ATCTGTAAATCACAAC
1 ATCCGTAAATCGCAAC
55687 ACTGAAATTT
Statistics
Matches: 121, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
19 1 0.01
20 119 0.98
22 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (20 bp):
ATCCGTAAATCGCAACGATA
Found at i:56407 original size:24 final size:24
Alignment explanation
Indices: 56368--56414 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
56358 AAATTTGGTC
56368 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
56392 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
56415 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:56606 original size:12 final size:12
Alignment explanation
Indices: 56589--56613 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
56579 ATATAATCCT
56589 GAAGAAGAAAAA
1 GAAGAAGAAAAA
56601 GAAGAAGAAAAA
1 GAAGAAGAAAAA
56613 G
1 G
56614 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:58916 original size:19 final size:19
Alignment explanation
Indices: 58894--59129 Score: 287
Period size: 19 Copynumber: 13.4 Consensus size: 19
58884 CGGAAATTAC
*
58894 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
58913 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
58927 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
58947 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
58961 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
58980 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
58994 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
59013 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
59032 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
59051 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
59070 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
59089 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
59103 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
59122 AATCGCAA
1 AATCGCAA
59130 CGAGAGAATC
Statistics
Matches: 190, Mismatches: 6, Indels: 42
0.80 0.03 0.18
Matches are distributed among these distances:
14 40 0.21
15 2 0.01
16 11 0.06
17 10 0.05
18 3 0.02
19 111 0.58
20 13 0.07
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:58966 original size:14 final size:14
Alignment explanation
Indices: 58947--59001 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
58937 CGGAAATGAA
58947 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
58961 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
58980 AATCGCAACGAGAG
1 AATCGCAACGAGAG
58994 AATCGCAA
1 AATCGCAA
59002 TGCGAAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.45, C:0.20, G:0.24, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:58981 original size:33 final size:33
Alignment explanation
Indices: 58894--59151 Score: 347
Period size: 33 Copynumber: 7.5 Consensus size: 33
58884 CGGAAATTAC
* * *
58894 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-GAG
58927 AATCGCAATGCGGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGAGAG
58961 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
*
58994 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAG
*
59032 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAG
*
59070 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
59103 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
59136 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
59152 TATAAACGCA
Statistics
Matches: 211, Mismatches: 7, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
33 108 0.51
34 30 0.14
35 3 0.01
36 2 0.01
37 1 0.00
38 67 0.32
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAG
Found at i:59108 original size:14 final size:14
Alignment explanation
Indices: 59089--59143 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
59079 GCGAAATGAA
59089 AATCGCAACGAAAG
1 AATCGCAACGAAAG
59103 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
*
59120 AAAATCGCAACGAGAG
1 --AATCGCAACGAAAG
59136 AATCGCAA
1 AATCGCAA
59144 TGCGAAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 16 0.46
16 6 0.17
17 5 0.14
19 8 0.23
ACGTcount: A:0.47, C:0.20, G:0.22, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:59167 original size:142 final size:138
Alignment explanation
Indices: 58894--59151 Score: 437
Period size: 142 Copynumber: 1.8 Consensus size: 138
58884 CGGAAATTAC
*
58894 AATCGCAACGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAG
1 AATCGCAACGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAA
58959 AGAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGC
66 AGAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGC
59024 GAAATGAA
131 GAAATGAA
* *
59032 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCA
1 AATCGCAACGCGAAATGAAAATCCCAA--C---ATGAAAATCGCAATGCGGAAATGAAAATCGCA
59096 ACGAAAGAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAAT
61 ACGAAAGAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAAT
59152 TATAAACGCA
Statistics
Matches: 112, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
138 25 0.22
140 1 0.01
142 70 0.62
143 16 0.14
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (138 bp):
AATCGCAACGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAA
AGAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGC
GAAATGAA
Found at i:59267 original size:19 final size:19
Alignment explanation
Indices: 59158--59259 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
59148 AAATTATAAA
59158 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
59177 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
59197 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
59213 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
59230 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
59249 CGCATTGCGAT
1 CGCATTGCGAT
59260 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:59393 original size:13 final size:14
Alignment explanation
Indices: 59366--59401 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
59356 CATCAATTAC
59366 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
59380 ACAAATCATC-TTT
1 ACAAATCAACTTTT
59393 ACAAATCAA
1 ACAAATCAA
59402 TTAAATAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:61345 original size:19 final size:19
Alignment explanation
Indices: 61305--61425 Score: 135
Period size: 19 Copynumber: 6.6 Consensus size: 19
61295 TAGTTTACTT
* *
61305 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
61325 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
61344 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
61363 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
61377 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
61396 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
61415 TCGCAATGCGA
1 TCGCAACGCGA
61426 TTTTGGTTTC
Statistics
Matches: 87, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
14 8 0.09
16 5 0.06
17 5 0.06
19 57 0.66
20 12 0.14
ACGTcount: A:0.45, C:0.24, G:0.19, T:0.12
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:61443 original size:19 final size:19
Alignment explanation
Indices: 61421--61549 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
61411 AAAATCGCAA
61421 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
61440 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
61454 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
61473 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
61487 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
61506 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
61525 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
61545 TGCGA
1 TGCGA
61550 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:61463 original size:33 final size:33
Alignment explanation
Indices: 61421--61512 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
61411 AAAATCGCAA
61421 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
61454 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
61487 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
61513 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:61713 original size:93 final size:93
Alignment explanation
Indices: 61597--62065 Score: 895
Period size: 93 Copynumber: 5.1 Consensus size: 93
61587 ATGGATTGCA
*
61597 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAAAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
61661 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
*
61689 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACATAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
61754 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
61782 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
61847 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
61875 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
61940 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
*
61968 TTACTTTCAACCAAAAGATAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
62033 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
62061 TTACT
1 TTACT
62066 AAGCAATCTA
Statistics
Matches: 372, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
92 4 0.01
93 368 0.99
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:63815 original size:19 final size:19
Alignment explanation
Indices: 63761--63886 Score: 85
Period size: 19 Copynumber: 7.1 Consensus size: 19
63751 TCTTTTGGTT
*
63761 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
**
63780 GAGAAT-AACTGTCGCAACGC
1 GA-AATGAA-AATCGCAACGC
*
63800 GAAATGACAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
63817 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
63833 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
63850 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
* *
63866 GAAATAAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
63885 GA
1 GA
63887 TTTTGGTTTC
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
14 20 0.24
15 2 0.02
16 4 0.05
17 4 0.05
18 2 0.02
19 36 0.44
20 14 0.17
ACGTcount: A:0.45, C:0.21, G:0.23, T:0.11
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:63827 original size:14 final size:14
Alignment explanation
Indices: 63808--63864 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
63798 GCGAAATGAC
63808 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
63822 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
63841 AATCGCAACGAGAG
1 AATCGCAACGAGAG
63855 AATCGCAACG
1 AATCGCAACG
63865 CGAAATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:63833 original size:33 final size:33
Alignment explanation
Indices: 63761--63881 Score: 170
Period size: 33 Copynumber: 3.5 Consensus size: 33
63751 TCTTTTGGTT
63761 GAAATGAAAATCGCAACGAGAGAATAACTGTCGCAACGC
1 GAAATGAAAATCGCAACGAGAG---AA---TCGCAACGC
*
63800 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
63833 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
63866 GAAATAAAAATCGCAA
1 GAAATGAAAATCGCAA
63882 TGCGATTTTG
Statistics
Matches: 79, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
33 56 0.71
36 2 0.03
39 21 0.27
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:63917 original size:14 final size:14
Alignment explanation
Indices: 63898--63954 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
63888 TTTGGTTTCG
63898 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
63912 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
63931 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
63945 CGTTGCGATT
1 CGTTGCGATT
63955 GTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:63936 original size:19 final size:19
Alignment explanation
Indices: 63912--64000 Score: 80
Period size: 19 Copynumber: 4.9 Consensus size: 19
63902 GCGATTCTCT
63912 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
63931 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
*
63945 CGTTGCGATTGTCATTTCG
1 CGTTGCGATTTTCATTTCG
*** *
63964 CGTTGCGACAGTCATTCTCT
1 CGTTGCGATTTTCATT-TCG
63984 CGTTGCGATTTTCATTT
1 CGTTGCGATTTTCATTT
64001 ATCTCGTTGC
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
14 10 0.18
16 2 0.04
17 3 0.05
19 25 0.45
20 15 0.27
ACGTcount: A:0.11, C:0.24, G:0.21, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:63992 original size:39 final size:33
Alignment explanation
Indices: 63882--64000 Score: 157
Period size: 33 Copynumber: 3.4 Consensus size: 33
63872 AAAATCGCAA
**
63882 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
63915 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
*
63948 TGCGATTGTCATTTCGCGTTGCGACAGTCATTCTCTCGT
1 TGCGATTTTCATTTCGCGTT--G-C-G--ATTCTCTCGT
63987 TGCGATTTTCATTT
1 TGCGATTTTCATTT
64001 ATCTCGTTGC
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
33 50 0.66
35 1 0.01
36 1 0.01
37 1 0.01
39 23 0.30
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.45
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:64134 original size:33 final size:33
Alignment explanation
Indices: 64092--64162 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
64082 AATACTAACT
64092 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
* *
64125 TGAAAATCGCAACGAGAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
64158 TGAAA
1 TGAAA
64163 TCTAAGTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
Found at i:64396 original size:22 final size:22
Alignment explanation
Indices: 64344--64398 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
64334 TGGTTGTGAG
**
64344 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
64366 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
64388 GGATTTCTTCG
1 GGATTTCTTCG
64399 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:64570 original size:20 final size:20
Alignment explanation
Indices: 64545--64738 Score: 203
Period size: 20 Copynumber: 9.7 Consensus size: 20
64535 CTTTAAATAT
64545 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
64565 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
* *
64587 -TCGTTGCGATTTACCGATA
1 CGCGTTGCGATTTACGGATA
*
64606 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
64626 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
64646 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
64666 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* * *
64686 CGCATTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
64706 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
64726 CGCGTTGCGATTT
1 CGCGTTGCGATTT
64739 TGGAAAATCG
Statistics
Matches: 143, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
19 2 0.01
20 124 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:64710 original size:60 final size:60
Alignment explanation
Indices: 64547--64718 Score: 236
Period size: 60 Copynumber: 2.9 Consensus size: 60
64537 TTAAATATCG
* ** *
64547 CGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACCGATACG
1 CGTTGCGATTTACGGATACGCATTGCGA-TTTATGTATTCGCGTTGCGATTTACCGATACA
* *** * *
64608 CGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATACA
1 CGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTACCGATACA
*
64668 CGTTGCGATTTACGGATACGCATTGCGATTTATGTGTTCGCGTTGCGATTT
1 CGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTT
64719 TCATATTCGC
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
60 69 0.73
61 26 0.27
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (60 bp):
CGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTACCGATACA
Found at i:64732 original size:60 final size:60
Alignment explanation
Indices: 64544--64859 Score: 232
Period size: 60 Copynumber: 5.2 Consensus size: 60
64534 GCTTTAAATA
* ** * *
64544 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACCGAT
1 TCGCGTTGCGATTTACGGATACGCATTGCGA-TTTATGTATTCGCGTTGCGATTTTCAGAT
* * *** * * *
64605 ACGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTTCAGAT
* * * *
64665 ACACGTTGCGATTTACGGATACGCATTGCGATTTATGTGTTCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTTCAGAT
* * * * * *
64725 TCGCGTTGCGATTT-TGGAAAATCGCAATGCGAATT-TG-ACTATCGCATTGCGATTTTCAAGAA
1 TCGCGTTGCGATTTACGG-ATA-CGCATTGCGATTTATGTA-T-TCGCGTTGCGATTTTC-AGAT
* * ** * * *
64787 TCGCGTTGCGATTT-TGGAAACTG-ATTTGCGATTCTGGGGA-TCGCGTTGCGATTTTTA-TT
1 TCGCGTTGCGATTTACGGATAC-GCA-TTGCGATT-TATGTATTCGCGTTGCGATTTTCAGAT
64846 TCGCGTTGCGATTT
1 TCGCGTTGCGATTT
64860 TGTTGGTCAT
Statistics
Matches: 208, Mismatches: 37, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
59 16 0.08
60 92 0.44
61 78 0.38
62 20 0.10
63 1 0.00
64 1 0.00
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (60 bp):
TCGCGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTTCAGAT
Found at i:64755 original size:21 final size:20
Alignment explanation
Indices: 64705--64802 Score: 79
Period size: 20 Copynumber: 4.8 Consensus size: 20
64695 ATTTATGTGT
* * * *
64705 TCGCGTTGCGATTTTCATAT
1 TCGCATTGCGATTTTGAAAA
*
64725 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTT-GAAAA
* * **
64746 TCGCAATGCGAATTTGACTA
1 TCGCATTGCGATTTTGAAAA
*
64766 TCGCATTGCGATTTTCAAGAA
1 TCGCATTGCGATTTTGAA-AA
*
64787 TCGCGTTGCGATTTTG
1 TCGCATTGCGATTTTG
64803 GAAACTGATT
Statistics
Matches: 61, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
20 32 0.52
21 29 0.48
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (20 bp):
TCGCATTGCGATTTTGAAAA
Found at i:64778 original size:61 final size:60
Alignment explanation
Indices: 64705--64861 Score: 176
Period size: 61 Copynumber: 2.6 Consensus size: 60
64695 ATTTATGTGT
*
64705 TCGCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAATCGCA-ATGCGAATT-TGACTA
1 TCGCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAAT-G-ATATGCG-ATTCTGACGA
* * * * * **
64766 TCGCATTGCGATTTTCAAGAATCGCGTTGCGATTTTGGAAACTGATTTGCGATTCTGGGGA
1 TCGCGTTGCGATTTTC-ATATTCGCGTTGCGATTTTGGAAAATGATATGCGATTCTGACGA
*
64827 TCGCGTTGCGATTTTTAT-TTCGCGTTGCGATTTTG
1 TCGCGTTGCGATTTTCATATTCGCGTTGCGATTTTG
64862 TTGGTCATTT
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
59 16 0.20
60 5 0.06
61 37 0.46
62 23 0.28
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.38
Consensus pattern (60 bp):
TCGCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAATGATATGCGATTCTGACGA
Found at i:64797 original size:41 final size:41
Alignment explanation
Indices: 64705--64861 Score: 110
Period size: 41 Copynumber: 3.9 Consensus size: 41
64695 ATTTATGTGT
* * *
64705 TCGCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGATTTTGATATTCGCATTGCGATTTTGCAAAA
** *
64746 TCGCAATGCGAATTTGACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGATTTTGA-TATTCGCATTGCGATTTTGCAA-AA
* * * ***
64787 TCGCGTTGCGATTTTGGAAACT-G-ATTTGCGATTCTG-GGGA
1 TCGCGTTGCGATTTT-GATATTCGCA-TTGCGATTTTGCAAAA
* *
64827 TCGCGTTGCGATTTTTAT-TTCGCGTTGCGATTTTG
1 TCGCGTTGCGATTTTGATATTCGCATTGCGATTTTG
64862 TTGGTCATTT
Statistics
Matches: 89, Mismatches: 19, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
38 1 0.01
39 12 0.13
40 19 0.21
41 52 0.58
42 5 0.06
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATTTTGATATTCGCATTGCGATTTTGCAAAA
Found at i:65507 original size:213 final size:209
Alignment explanation
Indices: 65041--65509 Score: 554
Period size: 210 Copynumber: 2.2 Consensus size: 209
65031 AAAAATATAC
* * * *
65041 ATTTATTTCAATTTTAAGTCTT-TCACTTTTATATGTATTCAATTTAGTCCTTAAATTTATATTT
1 ATTTATTTAAATTTTAA-T-TTGTAAC-TTTATATTTATTCAATTTAGTCCTCAAATTTATATTT
** * * ** * *
65105 GTATATTCATTTGACCTATTGTTAGTTGTTATTTATATTTTTGTAACTGATCCATAACTTTTTTA
63 GTATATGAAATTGACCCATACTTAGTTGTTATTTATATTTTTGTAACTGACCCATAACTTTTTAA
* * * * * *
65170 TTTGGTATAATTTAGTCCTTTTTTATATTAATTTCAACCTCACAATTTAAAATTATTTCGATTTG
128 ATGGGTATAATTTAGTAC-TTTTTATATTAATTCCAACCTCAAAATTTAAAATTATTTCAATTTG
65235 ATCCCTTTGTGTTGTTTA
192 ATCCCTTTGTGTTGTTTA
* *
65253 ATTTATTTAAATTTTTATTTGTAATTTTATATTTATTCAATTTAGTCCTCCAAA-TTATATTTGT
1 ATTTATTTAAATTTTAATTTGTAACTTTATATTTATTCAATTTAGTCCT-CAAATTTATATTTGT
* * *
65317 ATATGAAATTGACCCATACTTA-TTATTTATTTATATTTTT-TAATTGGCCCATAACTTTTTAAA
65 ATATGAAATTGACCCATACTTAGTT-GTTATTTATATTTTTGTAACTGACCCATAACTTTTTAAA
*
65380 TGGGTATAATTTAGTAC-TTTTGTATTAATTCCAACCTCAAAATTT-AAATTATTTCAATTTGAT
129 TGGGTATAATTTAGTACTTTTTATATTAATTCCAACCTCAAAATTTAAAATTATTTCAATTTGAT
65443 CCCTCATCAATGTGTGTTGTTTA
194 -CC-C-T---T-TGTGTTGTTTA
*
65466 ATTTATTTAAATTTTAATTTGTAACTTTATATTTGTTCAATTTA
1 ATTTATTTAAATTTTAATTTGTAACTTTATATTTATTCAATTTA
65510 ATTCTTACGT
Statistics
Matches: 220, Mismatches: 27, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
206 17 0.08
207 27 0.12
208 1 0.00
209 36 0.16
210 65 0.30
211 6 0.03
212 16 0.07
213 52 0.24
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (209 bp):
ATTTATTTAAATTTTAATTTGTAACTTTATATTTATTCAATTTAGTCCTCAAATTTATATTTGTA
TATGAAATTGACCCATACTTAGTTGTTATTTATATTTTTGTAACTGACCCATAACTTTTTAAATG
GGTATAATTTAGTACTTTTTATATTAATTCCAACCTCAAAATTTAAAATTATTTCAATTTGATCC
CTTTGTGTTGTTTA
Found at i:66777 original size:7 final size:7
Alignment explanation
Indices: 66765--66862 Score: 70
Period size: 7 Copynumber: 14.0 Consensus size: 7
66755 CATTTATATC
66765 AGGGTTT
1 AGGGTTT
66772 AGGGTTT
1 AGGGTTT
66779 AGGGTTT
1 AGGGTTT
**
66786 AAAGTTT
1 AGGGTTT
* *
66793 ATGATTT
1 AGGGTTT
*
66800 ATGGTTT
1 AGGGTTT
*
66807 ATGGTTT
1 AGGGTTT
*
66814 ATGGTTT
1 AGGGTTT
**
66821 AATGTTT
1 AGGGTTT
*
66828 ATGGTTT
1 AGGGTTT
** *
66835 AAAGTTC
1 AGGGTTT
66842 AGGGTTT
1 AGGGTTT
*
66849 AAGGTTT
1 AGGGTTT
66856 AGGGTTT
1 AGGGTTT
66863 CTATAAACTA
Statistics
Matches: 73, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 73 1.00
ACGTcount: A:0.21, C:0.01, G:0.30, T:0.48
Consensus pattern (7 bp):
AGGGTTT
Found at i:66784 original size:14 final size:14
Alignment explanation
Indices: 66767--66862 Score: 84
Period size: 14 Copynumber: 6.9 Consensus size: 14
66757 TTTATATCAG
*
66767 GGTTTAGGGTTTAG
1 GGTTTAGGGTTTAA
** *
66781 GGTTTAAAGTTTAT
1 GGTTTAGGGTTTAA
* * *
66795 GATTTATGGTTTAT
1 GGTTTAGGGTTTAA
*
66809 GGTTTATGGTTTAA
1 GGTTTAGGGTTTAA
* *
66823 TGTTTATGGTTTAA
1 GGTTTAGGGTTTAA
* *
66837 AGTTCAGGGTTTAA
1 GGTTTAGGGTTTAA
66851 GGTTTAGGGTTT
1 GGTTTAGGGTTT
66863 CTATAAACTA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 68 1.00
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.49
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:66792 original size:21 final size:21
Alignment explanation
Indices: 66767--66862 Score: 84
Period size: 21 Copynumber: 4.6 Consensus size: 21
66757 TTTATATCAG
66767 GGTTTAGGGTTTAGGGTTTAA
1 GGTTTAGGGTTTAGGGTTTAA
* * * * *
66788 AGTTTATGATTTATGGTTTAT
1 GGTTTAGGGTTTAGGGTTTAA
* ** *
66809 GGTTTATGGTTTAATGTTTAT
1 GGTTTAGGGTTTAGGGTTTAA
** *
66830 GGTTTAAAGTTCAGGGTTTAA
1 GGTTTAGGGTTTAGGGTTTAA
66851 GGTTTAGGGTTT
1 GGTTTAGGGTTT
66863 CTATAAACTA
Statistics
Matches: 57, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.49
Consensus pattern (21 bp):
GGTTTAGGGTTTAGGGTTTAA
Found at i:66965 original size:23 final size:24
Alignment explanation
Indices: 66937--66981 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
66927 TAATTTACTT
66937 TATATAGTTTATATATA-TATATA
1 TATATAGTTTATATATACTATATA
66960 TATATAGTTTATATATACTATA
1 TATATAGTTTATATATACTATA
66982 CATGGTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (24 bp):
TATATAGTTTATATATACTATATA
Found at i:67274 original size:589 final size:584
Alignment explanation
Indices: 66258--67376 Score: 1981
Period size: 589 Copynumber: 1.9 Consensus size: 584
66248 TCGAATGTTT
*
66258 AGGGTTTAAGGTTTAGGGTTTCTATAAACTATATACTTTTTTACTTTATATAGTTTATGCATAGT
1 AGGGTTTAAGGTTTAGGGTTTCTATAAACTATATACTTTATTACTTTATATAGTTTATGCATAGT
66323 GTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTATATATATATATATATAGTTTATAT
66 GTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTATATATATATATATATAGTTTATAT
* *
66388 ATGCTATACATGGTTTATACATATATATTATATAAAATTATTTAACAAATTTAAAAAATAATTTA
131 ATACTATACATGGTTTATACATACATATTATATAAAATTATTTAACAAATTTAAAAAATAATTTA
*
66453 AATGTAAATTATATAAAACATGATTAATTAGGTGTTAAATAATTAGTATGTCACTTTGCATATTA
196 AATGTAAATTATATAAAACATGATTAATTAGGTGTTAAATAATTAGTATGTCACATTGCATATTA
* * *
66518 TATGGTTCATAAATAGTAGTACATGTCATATTAATTTTATTTGCATAATTAGTATTTTTGTTGAA
261 TATGGTTCATAAATAGTAGTACATGTCATATTAATGTCATTTGCATAATTAGTATTTTAGTTGAA
66583 TGTTAGGTTAATTCACATTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAATAAAACCA
326 TGTTAGGTTAATTCACATTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAATAAAACCA
* * *
66648 AAAAATAAGTCCATTTGCTTTAGTTCTAGTTCATTTACATTAATTTACATAGA-CCCAATACATA
391 AAAAATAAGTCCATTTGCTTTACTGCTAGTCCATTTACATTAATTTACATA-ATCCCAATACATA
*
66712 AGCCCACTCTTTTATTACAAATATATAGGTATTAGTGCTAGTCCATTTATATCAGGGTTTAGGGT
455 AGCCCACTCTTTTATTACAAATATATAGGCATTAGTGCTAGTCCATTTATATCAGGGTTTAGGGT
66777 TTAGGGTTTAAAGTTTATGATTTATGGTTTATGGTTTATGGTTTAATGTTTATGGTTTAAAGTTC
520 TTAGGGTTTAAAGTTTATGATTTATGGTTTATGGTTTATGGTTTAATGTTTATGGTTTAAAGTTC
* *
66842 AGGGTTTAAGGTTTAGGGTTTCTATAAACTATATACTTTATTACTTTATATAGTTTATGCGTTGT
1 AGGGTTTAAGGTTTAGGGTTTCTATAAACTATATACTTTATTACTTTATATAGTTTATGCATAGT
66907 GTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTATATATATATATATATATAGTTTAT
66 GTTTCTATAAACTATATAAGTAATTTACTTTATATAG-TT-TATATATATATATATATAGTTTAT
*
66972 ATATACTATACATGGTTTATACATACATATTATATAAAATTATTTAATAAATTTAAAAAAAAATA
129 ATATACTATACATGGTTTATACATACATATTATATAAAATTATTTAACAAATTT---AAAAAATA
67037 ATTTAAATGTAAATTATATAAAACATGATTAATTAGGTGTTAAATAATTAGTATGTCACATTGCA
191 ATTTAAATGTAAATTATATAAAACATGATTAATTAGGTGTTAAATAATTAGTATGTCACATTGCA
67102 TATTATATGGTTCATAAATAGTAGTACATGTCATATTAATGTCATTTGCATAATTAGTATTTTAG
256 TATTATATGGTTCATAAATAGTAGTACATGTCATATTAATGTCATTTGCATAATTAGTATTTTAG
*
67167 TTGCATGTTAGGTTAATTCACATTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAATAA
321 TTGAATGTTAGGTTAATTCACATTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAATAA
* *
67232 AACCCAAAAATAAGTCCATTTG-TATTACTGCTAGTCCATTTACATTAGTTTACATAATCCCAAT
386 AACCAAAAAATAAGTCCATTTGCT-TTACTGCTAGTCCATTTACATTAATTTACATAATCCCAAT
* * *
67296 ACATAAGCCCACTCTTTTATTACAAATATATAGGCATTATTGCTAGTCCGTTTATATTAGGGTTT
450 ACATAAGCCCACTCTTTTATTACAAATATATAGGCATTAGTGCTAGTCCATTTATATCAGGGTTT
67361 AGGGTTTAGGGTTTAA
515 AGGGTTTAGGGTTTAA
67377 TGATTATGGC
Statistics
Matches: 508, Mismatches: 20, Indels: 9
0.95 0.04 0.02
Matches are distributed among these distances:
584 99 0.19
585 2 0.00
586 75 0.15
588 2 0.00
589 330 0.65
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (584 bp):
AGGGTTTAAGGTTTAGGGTTTCTATAAACTATATACTTTATTACTTTATATAGTTTATGCATAGT
GTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTATATATATATATATATAGTTTATAT
ATACTATACATGGTTTATACATACATATTATATAAAATTATTTAACAAATTTAAAAAATAATTTA
AATGTAAATTATATAAAACATGATTAATTAGGTGTTAAATAATTAGTATGTCACATTGCATATTA
TATGGTTCATAAATAGTAGTACATGTCATATTAATGTCATTTGCATAATTAGTATTTTAGTTGAA
TGTTAGGTTAATTCACATTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAATAAAACCA
AAAAATAAGTCCATTTGCTTTACTGCTAGTCCATTTACATTAATTTACATAATCCCAATACATAA
GCCCACTCTTTTATTACAAATATATAGGCATTAGTGCTAGTCCATTTATATCAGGGTTTAGGGTT
TAGGGTTTAAAGTTTATGATTTATGGTTTATGGTTTATGGTTTAATGTTTATGGTTTAAAGTTC
Found at i:67364 original size:7 final size:7
Alignment explanation
Indices: 67352--67417 Score: 60
Period size: 7 Copynumber: 9.4 Consensus size: 7
67342 TCCGTTTATA
67352 TTAGGGT
1 TTAGGGT
67359 TTAGGGT
1 TTAGGGT
67366 TTAGGGT
1 TTAGGGT
** *
67373 TTAATGA
1 TTAGGGT
* *
67380 TTATGGC
1 TTAGGGT
**
67387 TTAAAGT
1 TTAGGGT
*
67394 TTAAGGT
1 TTAGGGT
67401 TTAGGGT
1 TTAGGGT
67408 TTAGGGT
1 TTAGGGT
67415 TTA
1 TTA
67418 TATAAACTAT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.23, C:0.02, G:0.32, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:67472 original size:554 final size:551
Alignment explanation
Indices: 66254--67562 Score: 1592
Period size: 589 Copynumber: 2.3 Consensus size: 551
66244 GATGTCGAAT
* * * *
66254 GTTTAGGGTTTAAGGTTTAGGGTTTCTATAAACTATATACTTTT-TTACTTTATATAGTTTATGC
1 GTTTAAGGTTTAAGGTTTAGGGTTTATATAAACTATATA-TTTTATTACTTTATATAATTCATGC
* *
66318 ATAGTGTTTCTATAAACTATATAAGTAATTTACTTTATATAG-TTTATATATATATATAT-ATAG
65 ATAGTATTTTTATAAACTATATAAGTAATTTACTTTATATAGTTTTATATATATATATATAATAG
* *
66381 TTTATATATGCTATACATGGTTTATACATATATATTATATAAAATTATTTAACAAATTTAAAAAA
130 TTTATATATACTATACATGGTTTATACATACATATTATATAAAATTATTTAACAAATTTAAAAAA
*
66446 TAATTTAAATGTAAATTATATAAAACATGATTAATTAGGTGTTAAATAATTAGTATGTCACTTTG
195 TAATTTAAATGTAAATTATATAAAACATGATTAATTAGGTGTTAAATAATTAGTATGTCACATTG
* *
66511 CATATTATATGGTTCATAAATAGTAGTACATGTCATATTAATTTTATTTGCATAATTAGTATTTT
260 CATATTATATGGTTCATAAATAGTAGTACATGTCATATTAATGTCATTTGCATAATTAGTATTTT
*
66576 TGTTGAATGTTAGGTTAATTCACATTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAAT
325 AGTTGAATGTTAGGTTAATTCACATTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAAT
* * *
66641 AAAACCAAAAAATAAGTCCATTTGCTTTAGTTCTAGTTCATTTACATTAATTTACATAGACCCAA
390 AAAACCAAAAAATAAGTCCATTTGCTTTACTGCTAGTCCATTTACATTAATTTACATAGACCCAA
*
66706 TACATAAGCCCACTCTTTTATTACAAATATATAGGTATTAGTGCTAGTCCATTTATATCAGGGTT
455 TACATAAGCCCACTCTTTTATTACAAATATATAGGCATTAGTGCTAGTCCATTTATATCAGGGTT
* * **
66771 TAGGGTTTAGGGTTTAAAGTTTATGATTTATG
520 TAGGGTTTAGGGTTTAAAGATTATGACTTAAA
* * ** * * ** * * *
66803 GTTTATGGTTTATGGTTTAATGTTTATGGTTTAAAGT-TCAGGGTTTAAGGTTTAGGGTTTCTAT
1 GTTTAAGGTTTAAGGTTTAGGGTTTA---TATAAACTAT-A-TATTTTA---TTA--CTTTATAT
* * * * * ** ** *
66867 AA-ACTAT--ATACTTTATTACTTTATATAGTTTATGCGTTGTGTTTCTATAAACTATATAAGTA
56 AATTC-ATGCATA--GTATT--TTTATAAACTATATAAGTAAT-TTACT-T----TATAT-AG--
66929 ATTTACTTTATATAGTTTATATATATATATATATATAGTTTATATATACTATACATGGTTTATAC
107 -------TT-T-TA---TAT--ATATATATATA-ATAGTTTATATATACTATACATGGTTTATAC
*
66994 ATACATATTATATAAAATTATTTAATAAATTTAAAAAAAAATAATTTAAATGTAAATTATATAAA
157 ATACATATTATATAAAATTATTTAACAAATTT---AAAAAATAATTTAAATGTAAATTATATAAA
67059 ACATGATTAATTAGGTGTTAAATAATTAGTATGTCACATTGCATATTATATGGTTCATAAATAGT
219 ACATGATTAATTAGGTGTTAAATAATTAGTATGTCACATTGCATATTATATGGTTCATAAATAGT
*
67124 AGTACATGTCATATTAATGTCATTTGCATAATTAGTATTTTAGTTGCATGTTAGGTTAATTCACA
284 AGTACATGTCATATTAATGTCATTTGCATAATTAGTATTTTAGTTGAATGTTAGGTTAATTCACA
*
67189 TTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAATAAAACCCAAAAATAAGTCCATTTG
349 TTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAATAAAACCAAAAAATAAGTCCATTTG
*
67254 -TATTACTGCTAGTCCATTTACATTAGTTTACATA-ATCCCAATACATAAGCCCACTCTTTTATT
414 CT-TTACTGCTAGTCCATTTACATTAATTTACATAGA-CCCAATACATAAGCCCACTCTTTTATT
* * * *
67317 ACAAATATATAGGCATTATTGCTAGTCCGTTTATATTAGGGTTTAGGGTTTAGGGTTTAATGATT
477 ACAAATATATAGGCATTAGTGCTAGTCCATTTATATCAGGGTTTAGGGTTTAGGGTTTAAAGATT
*
67382 ATGGCTTAAA
542 ATGACTTAAA
*
67392 GTTTAAGGTTTAGGGTTTAGGGTTTATATAAACTATATATTTTATTACTTTATATAATTCATGCA
1 GTTTAAGGTTTAAGGTTTAGGGTTTATATAAACTATATATTTTATTACTTTATATAATTCATGCA
67457 TAGTATTTTTATAAACTATATAAGTAATTTACTTTATATAGTTTATATATATATATATGTTATAT
66 TAGTATTTTTATAAACTATATAAGTAATTTACTTTATATAG--T-T-T-TATATATA---TATAT
* *
67522 ATATATAGTTTATACATACTATACATGATTTATACATACAT
123 ATA-ATAGTTTATATATACTATACATGGTTTATACATACAT
67563 GTATTATAAG
Statistics
Matches: 632, Mismatches: 73, Indels: 96
0.79 0.09 0.12
Matches are distributed among these distances:
549 21 0.03
551 1 0.00
552 10 0.02
556 6 0.01
558 12 0.02
560 16 0.03
561 4 0.01
562 4 0.01
563 44 0.07
564 2 0.00
565 6 0.01
566 5 0.01
567 2 0.00
571 2 0.00
572 5 0.01
576 1 0.00
577 5 0.01
578 15 0.02
579 2 0.00
580 14 0.02
581 1 0.00
582 9 0.01
584 10 0.02
585 4 0.01
586 67 0.11
587 1 0.00
588 2 0.00
589 361 0.57
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.44
Consensus pattern (551 bp):
GTTTAAGGTTTAAGGTTTAGGGTTTATATAAACTATATATTTTATTACTTTATATAATTCATGCA
TAGTATTTTTATAAACTATATAAGTAATTTACTTTATATAGTTTTATATATATATATATAATAGT
TTATATATACTATACATGGTTTATACATACATATTATATAAAATTATTTAACAAATTTAAAAAAT
AATTTAAATGTAAATTATATAAAACATGATTAATTAGGTGTTAAATAATTAGTATGTCACATTGC
ATATTATATGGTTCATAAATAGTAGTACATGTCATATTAATGTCATTTGCATAATTAGTATTTTA
GTTGAATGTTAGGTTAATTCACATTAATAACCCATTTATTTTGTTGTTATGAATAAGTAATAATA
AAACCAAAAAATAAGTCCATTTGCTTTACTGCTAGTCCATTTACATTAATTTACATAGACCCAAT
ACATAAGCCCACTCTTTTATTACAAATATATAGGCATTAGTGCTAGTCCATTTATATCAGGGTTT
AGGGTTTAGGGTTTAAAGATTATGACTTAAA
Found at i:67511 original size:15 final size:15
Alignment explanation
Indices: 67491--67535 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 15
67481 TAATTTACTT
67491 TATATAGTTTATATA
1 TATATAGTTTATATA
*
67506 TATATATATGTTATATA
1 TATATA-GT-TTATATA
67523 TATATAGTTTATA
1 TATATAGTTTATA
67536 CATACTATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 11 0.42
16 2 0.08
17 13 0.50
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (15 bp):
TATATAGTTTATATA
Found at i:67513 original size:17 final size:17
Alignment explanation
Indices: 67491--67535 Score: 67
Period size: 15 Copynumber: 2.8 Consensus size: 17
67481 TAATTTACTT
67491 TATATAGTTTATATATA
1 TATATAGTTTATATATA
*
67508 TATATA-TGT-TATATA
1 TATATAGTTTATATATA
67523 TATATAGTTTATA
1 TATATAGTTTATA
67536 CATACTATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 12 0.50
16 4 0.17
17 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (17 bp):
TATATAGTTTATATATA
Found at i:68088 original size:38 final size:37
Alignment explanation
Indices: 68046--68127 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 37
68036 CAAGTTCCCA
*
68046 AAATTTTCTATTCCCTCTAAATTTCTC-AATTTCCCTCT
1 AAATTTTCAATTCCC-CTAAA-TTCTCAAATTTCCCTCT
* *
68084 AAATTTTCAATTTCCCTATATTCTCAAAATTTCCCTCT
1 AAATTTTCAATTCCCCTAAATTCTC-AAATTTCCCTCT
68122 AAATTT
1 AAATTT
68128 CCAAATAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
36 5 0.13
37 4 0.10
38 30 0.77
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (37 bp):
AAATTTTCAATTCCCCTAAATTCTCAAATTTCCCTCT
Found at i:68095 original size:19 final size:19
Alignment explanation
Indices: 68046--68127 Score: 89
Period size: 20 Copynumber: 4.3 Consensus size: 19
68036 CAAGTTCCCA
*
68046 AAATTTTCTA-TTCCCTCT
1 AAATTTTCAATTTCCCTCT
68064 AAATTTCTCAATTTCCCTCT
1 AAATTT-TCAATTTCCCTCT
68084 AAATTTTCAATTT-CC-CT
1 AAATTTTCAATTTCCCTCT
* *
68101 ATATTCTCAAAATTTCCCTCT
1 AAATTTTC--AATTTCCCTCT
68122 AAATTT
1 AAATTT
68128 CCAAATAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 8 0.15
19 15 0.28
20 16 0.30
21 6 0.11
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATTTTCAATTTCCCTCT
Found at i:68344 original size:15 final size:15
Alignment explanation
Indices: 68241--68345 Score: 56
Period size: 15 Copynumber: 6.9 Consensus size: 15
68231 ATATACTTTT
* *
68241 TATAGTTTATACATA
1 TATAGTTTATATAAA
68256 TATAGTTTATAT--A
1 TATAGTTTATATAAA
* *
68269 TATGGTTCATATAAA
1 TATAGTTTATATAAA
* *
68284 AATAATTTATAT--A
1 TATAGTTTATATAAA
**
68297 TATAACTTATAATAATTA
1 TATAGTTTAT-ATAA--A
68315 TATAGTTTATAATATAAA
1 TATAG-TT-T-ATATAAA
68333 TATAGTTTATATA
1 TATAGTTTATATA
68346 TAAACTTATA
Statistics
Matches: 69, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
13 20 0.29
14 2 0.03
15 25 0.36
16 1 0.01
17 2 0.03
18 11 0.16
19 1 0.01
20 5 0.07
21 2 0.03
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.47
Consensus pattern (15 bp):
TATAGTTTATATAAA
Found at i:68348 original size:17 final size:18
Alignment explanation
Indices: 68314--68349 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
68304 TATAATAATT
68314 ATATAGTTTATAATATAA
1 ATATAGTTTATAATATAA
68332 ATATAGTTTAT-ATATAA
1 ATATAGTTTATAATATAA
68349 A
1 A
68350 CTTATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
ATATAGTTTATAATATAA
Found at i:68775 original size:210 final size:207
Alignment explanation
Indices: 68436--68936 Score: 603
Period size: 210 Copynumber: 2.4 Consensus size: 207
68426 CATTTTGTAT
* * * * * * * *
68436 TTATTTCGATTTCATTCTTTTATGTTTTTTAATTTATTTCAATTTTAAGTCTT-TCACTTTTATA
1 TTATTTCGATTTGATCCCTTTGTGTTGTTTAATTTATTTAAATTTTAA-T-TTGT-AATTTCATA
* * * ** * * ** *
68500 TGTATTTAATTTAGTCCTTAAATTTATATTTGCATATTCATTTGACCTATTGTTAGTTGTTATTT
63 TTTATTCAATTTAGTCCTCAAATTTATATTTGCATATGAAATTGACCCATACTTAGTTCTTATTT
* * *
68565 ATATTTTTGTAACTGACCCATAACTTTTTAAATTGGTATAATTTAGTCCTTTTTTATATTAATTT
128 ATATTTTT-TAACTGACCCATAACTTTTTAAATGGGTATAATTTAGTAC-TTTTTATATTAATTC
68630 CAACCTCACAATTTAAAA
191 CAACCTCACAATTT-AAA
*
68648 TTATTTCGATTTGATCCCTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTT
1 TTATTTCGATTTGATCCCTTTGTGTTGTTTAATTTATTTAAATTTTAATTTGTAATTTCATATTT
68713 ATTCAATTTAGTCCTCCAAA-TTATATTTGCATATGAAATTGACCCATACTTA-TTACTTATTTA
66 ATTCAATTTAGTCCT-CAAATTTATATTTGCATATGAAATTGACCCATACTTAGTT-CTTATTTA
* * *
68776 TATTTTTTAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTGTATTAATTCCAA
129 TATTTTTTAACTGACCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTATATTAATTCCAA
68841 CCTCACAATTTAAA
194 CCTCACAATTTAAA
*
68855 TTATTTCAATTTGATCCCTCATCAATGTTTGTTGTTTAATTTATTTAAATTTTAATTTGTAATTT
1 TTATTTCGATTTGATCCCT--T---TG--TGTTGTTTAATTTATTTAAATTTTAATTTGTAATTT
*
68920 CATATTTGTTCAATTTA
59 CATATTTATTCAATTTA
68937 ATTCTTACGT
Statistics
Matches: 251, Mismatches: 28, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
207 21 0.08
208 27 0.11
209 39 0.16
210 65 0.26
211 5 0.02
212 43 0.17
214 51 0.20
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.52
Consensus pattern (207 bp):
TTATTTCGATTTGATCCCTTTGTGTTGTTTAATTTATTTAAATTTTAATTTGTAATTTCATATTT
ATTCAATTTAGTCCTCAAATTTATATTTGCATATGAAATTGACCCATACTTAGTTCTTATTTATA
TTTTTTAACTGACCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTATATTAATTCCAACC
TCACAATTTAAA
Found at i:79121 original size:11 final size:11
Alignment explanation
Indices: 79105--79131 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
79095 GTTGTAGGTG
79105 GAAATCATGAA
1 GAAATCATGAA
79116 GAAATCATGAA
1 GAAATCATGAA
79127 GAAAT
1 GAAAT
79132 ATTAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.07, G:0.19, T:0.19
Consensus pattern (11 bp):
GAAATCATGAA
Found at i:79484 original size:182 final size:182
Alignment explanation
Indices: 79188--79841 Score: 989
Period size: 182 Copynumber: 3.6 Consensus size: 182
79178 GATACAAATA
* *
79188 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTTTCGAAATGATC
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAACGA-C
* * **
79253 -AAACCGGTAAAACGCTACCAGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGGTACTT
65 AAAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATACATTAATATAAGTATCGACACTT
* *
79317 TTGGAATTTAAAAGACAAGCAATAATAGCGCCTATAAAGTGTCGATATTTTAT
130 TTGGAATTTAAAAGAGAAGCAATAATAGCGCCTATAAAGTGTCGATACTTTAT
* * * *
79370 AAAAATATATCGATCTATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAACGAAA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAACGACA
* * *
79435 AAATCGGTAAAACGCTACCGGATATGTTGAAAGTGTTGATACATTAATATAAATATCGACACTTT
66 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATACATTAATATAAGTATCGACACTTT
* *
79500 TGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAGGTGTCGATACTTTAT
131 TGGAATTTAAAAGAGAAGCAATAATAGCGCCTATAAAGTGTCGATACTTTAT
* * * *
79552 AAAAATGTATCGATCCATAATAATAAAACAGGTAAAAATATGAC-AAACTGGTCTTGAAACGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAACGACA
*
79616 AAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACATTAATATAAGTATCGACACTTT
66 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATACATTAATATAAGTATCGACACTTT
79681 TGG-----AAAAGAGAAGCAATAATAGCGCCTATAAAGTGTCGATACTTTAT
131 TGGAATTTAAAAGAGAAGCAATAATAGCGCCTATAAAGTGTCGATACTTTAT
* * *
79728 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGTCAAAACCGGACTCGAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAACGACA
* * * *
79793 AAATCAGTAAAACGCTACCGGATATGTTGAAAGTGTTGATACTTTAATA
66 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATACATTAATA
79842 AGTACACGTA
Statistics
Matches: 427, Mismatches: 43, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
176 83 0.19
177 60 0.14
181 81 0.19
182 203 0.48
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (182 bp):
AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAACGACA
AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATACATTAATATAAGTATCGACACTTT
TGGAATTTAAAAGAGAAGCAATAATAGCGCCTATAAAGTGTCGATACTTTAT
Found at i:81756 original size:22 final size:23
Alignment explanation
Indices: 81706--81761 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
81696 TGAAGAACAT
* *
81706 TTTTTTTATATAAAATGATAGTA
1 TTTTATTATATAAAATGATAGAA
81729 TATTTATTATATAAAATGATA-AA
1 T-TTTATTATATAAAATGATAGAA
81752 TTTTATTATA
1 TTTTATTATA
81762 AATACAGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 9 0.30
23 3 0.10
24 18 0.60
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (23 bp):
TTTTATTATATAAAATGATAGAA
Found at i:82425 original size:18 final size:18
Alignment explanation
Indices: 82402--82440 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
82392 GAAAAAATAT
82402 GAAGAAGAAAAGATGGAG
1 GAAGAAGAAAAGATGGAG
82420 GAAGAAGAAAAGATGGAG
1 GAAGAAGAAAAGATGGAG
82438 GAA
1 GAA
82441 ATGAGGAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.38, T:0.05
Consensus pattern (18 bp):
GAAGAAGAAAAGATGGAG
Found at i:82786 original size:19 final size:19
Alignment explanation
Indices: 82762--82807 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
82752 GTAGGATTAT
82762 TTTTGTATAAGATTTATAA
1 TTTTGTATAAGATTTATAA
*
82781 TTTTGTATACGATTTATAA
1 TTTTGTATAAGATTTATAA
82800 TTTTGTAT
1 TTTTGTAT
82808 GTGAATGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (19 bp):
TTTTGTATAAGATTTATAA
Found at i:83605 original size:200 final size:201
Alignment explanation
Indices: 83256--84404 Score: 1463
Period size: 200 Copynumber: 5.8 Consensus size: 201
83246 GTAATCAGAT
*
83256 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAA-ATCAAAACTCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATA
* * * *
83320 GGTAATTTTGCAATGTAACCGGT-ATAAATATATCGATTTTATGAGATAATAGGTCTACATAATG
66 GGTAATTTTGCAATGTAACCGGTGATAAATATACCGGTTTTATGAGAGAATAGGTATACATAATG
* ** * **
83384 TATCGACACTTGTGGAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAAAGAGGTGCAC
131 TATCGACACTTTTAAAATTTGTGTCGATACATTTTGTCCAGAATGAATG-CCAAACTAGGTGCAC
83449 ACATAAA
195 ACATAAA
*
83456 GTGTCGATACATTTATAAAAAGTTTCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATA
* * *
83521 GGTAATTTTGCAATGTAA-AGGTGA-AAATATATCGGTTTTATGAGAGAATATGTATACATAATG
66 GGTAATTTTGCAATGTAACCGGTGATAAATATACCGGTTTTATGAGAGAATAGGTATACATAATG
* *
83584 TATCGACACTTTTAAAATTTGTGTTGATACATTTTGTCCAGAATGAATGCCAAA-TGAGGTACAC
131 TATCGACACTTTTAAAATTTGTGTCGATACATTTTGTCCAGAATGAATGCCAAACT-AGGTGCAC
83648 ACATAAA
195 ACATAAA
* * *
83655 GTGTCGATACATTTATTAAAAGTATCG-------AAAC-T-G------ATAATTACAATTTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATA
* * * **
83705 GTTAAATTTT-CAATGTAACCGGTG-GAAATGTACCTTTTTTATGAGAGAATAGGTATACATAAT
66 GGT-AATTTTGCAATGTAACCGGTGATAAATATACCGGTTTTATGAGAGAATAGGTATACATAAT
* * *
83768 GTATCAACACTTTCAAAATTTGTGTCGATACATTTTGTCGAGAATGAATGCCCAAACTAGGTGCA
130 GTATCGACACTTTTAAAATTTGTGTCGATACATTTTGTCCAGAATGAATG-CCAAACTAGGTGCA
*
83833 CGCATAAA
194 CACATAAA
* * * * *
83841 GTTTCGATACATTTATAAAAAATATCGATCCTAAAAACATCGAAACTGATAATTACAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATA
* * *
83906 GGTAAATTTGCAATGTAACC-GTTAGAAATATACCGGTTTTATGAGAGAATAGGTATACATAATG
66 GGTAATTTTGCAATGTAACCGGTGATAAATATACCGGTTTTATGAGAGAATAGGTATACATAATG
* *
83970 TATCGATACTTTTAAAATTTGTTTCGATACATTTTGTCCAGAATGAATGCCAAACTAGGTGCACA
131 TATCGACACTTTTAAAATTTGTGTCGATACATTTTGTCCAGAATGAATGCCAAACTAGGTGCACA
84035 CATAAA
196 CATAAA
* * * **
84041 GTTTCGATACATTTATAAAATGTCTCGATCCCAAAAACATCGAAACAAATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATA
* * * *
84106 GGTAATTTTACAATATAACCGGTG-GAAATATACCGGTTTTATGAGAGAATATGTATACATAATG
66 GGTAATTTTGCAATGTAACCGGTGATAAATATACCGGTTTTATGAGAGAATAGGTATACATAATG
* *
84170 TATCGACACTTTTAAAATTTGTGTCGATACATTTTGTCCAGAATGAATGTCAAACTAGGTGCACG
131 TATCGACACTTTTAAAATTTGTGTCGATACATTTTGTCCAGAATGAATGCCAAACTAGGTGCACA
84235 CATAAA
196 CATAAA
* * *
84241 GTGTCGATATATTTATAAAAAGTATCAACCCCAAAAACATCGAAAC-CAATAATTATAATGTAAT
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACTC-ATAATTATAATGTAAT
* * * * * * *
84305 AGGTAATTTTTCAATATAACCGGT-ATAAATATACCTGTTTAATTAGAAAATAGGTCA-GCATAA
65 AGGTAATTTTGCAATGTAACCGGTGATAAATATACCGGTTTTATGAGAGAATAGGT-ATACATAA
* * * *
84368 TGTTTCGACAC-TTTATAAATTGGTATCGATACTTTTT
129 TGTATCGACACTTTTA-AAATTTGTGTCGATACATTTT
84405 TTAAATTACG
Statistics
Matches: 837, Mismatches: 82, Indels: 60
0.85 0.08 0.06
Matches are distributed among these distances:
184 25 0.03
185 89 0.11
186 42 0.05
187 1 0.00
190 1 0.00
191 1 0.00
192 4 0.00
193 4 0.00
194 1 0.00
195 1 0.00
199 48 0.06
200 463 0.55
201 157 0.19
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (201 bp):
GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATA
GGTAATTTTGCAATGTAACCGGTGATAAATATACCGGTTTTATGAGAGAATAGGTATACATAATG
TATCGACACTTTTAAAATTTGTGTCGATACATTTTGTCCAGAATGAATGCCAAACTAGGTGCACA
CATAAA
Found at i:84478 original size:400 final size:397
Alignment explanation
Indices: 83286--84404 Score: 1215
Period size: 385 Copynumber: 2.8 Consensus size: 397
83276 AGTATCGATC
* ** * * **
83286 CCAAAAA-ATCAAAACTCATAATTATAATGTAATAGGT-AATTTTGCAATGTAACCGGTATAAAT
1 CCAAAAACATCGAAACAAATAATTACAATGTAATAGGTAAATTTT-CAATATAACCGGTGGAAAT
* * * * * **
83349 ATATCGATTTTATGAGATAATAGGTCTACATAATGTATCGACACTTGT-GGAATTTGTGTCGATA
65 ATACCGGTTTTATGAGAGAATAGGTATACATAATGTATCAACACTT-TCAAAATTTGTGTCGATA
* ** * *
83413 CTTTTTGTCCAGAATGAATGCCCAAAAGAGGTGCACACATAAAGTGTCGATACATTTATAAAAAG
129 CATTTTGTCCAGAATGAATGCCCAAACTAGGTGCACGCATAAAGTGTCGATACATTTATAAAAAA
* * * * * * *
83478 TTTCGATCCCAAAAACATCGAAACTC-ATAATTATAATGTAATAGGTAATTTTGCAATGTAA-AG
194 TATCAACCCCAAAAACATCGAAAC-CAATAATTACAATGTAATAGGTAAATTTGCAATATAACCG
* * * * *
83541 GT-GAAAATATATCGGTTTTATGAGAGAATATGTATACATAATGTATCGACACTTTTAAAATTTG
258 GTAG-AAATATACCGGTTTAATGAGAAAATAGGTATACATAATGTATCGACACTTTTAAAATTGG
* * * *
83605 TGTTGATACATTTTGTCCAGAATGAATGCCAAA-TGAGGTACACACATAAAG-TGTCGATAC--A
322 TATCGATACATTTTGTCCAGAATGAATGCCAAACT-A-GTGCACACATAAAGAT-TAGATACATA
83666 T------T-T--AT
384 TAAAAACTCTCAAT
* ** ** * * * *
83671 -TAAAAGTATCGAAACTGATAATTACAATTTAATAGTTAAATTTTCAATGTAACCGGTGGAAATG
1 CCAAAAACATCGAAACAAATAATTACAATGTAATAGGTAAATTTTCAATATAACCGGTGGAAATA
**
83735 TACCTTTTTTATGAGAGAATAGGTATACATAATGTATCAACACTTTCAAAATTTGTGTCGATACA
66 TACCGGTTTTATGAGAGAATAGGTATACATAATGTATCAACACTTTCAAAATTTGTGTCGATACA
* *
83800 TTTTGTCGAGAATGAATGCCCAAACTAGGTGCACGCATAAAGTTTCGATACATTTATAAAAAATA
131 TTTTGTCCAGAATGAATGCCCAAACTAGGTGCACGCATAAAGTGTCGATACATTTATAAAAAATA
* * * ** * *
83865 TCGATCCTAAAAACATCGAAACTGATAATTACAATGTAATAGGTAAATTTGCAATGTAACCGTTA
196 TCAACCCCAAAAACATCGAAACCAATAATTACAATGTAATAGGTAAATTTGCAATATAACCGGTA
* * * * *
83930 GAAATATACCGGTTTTATGAGAGAATAGGTATACATAATGTATCGATACTTTTAAAATTTGTTTC
261 GAAATATACCGGTTTAATGAGAAAATAGGTATACATAATGTATCGACACTTTTAAAATTGGTATC
* *
83995 GATACATTTTGTCCAGAATGAATGCCAAACTAGGTGCACACATAAAGTTTCGATACATTTATAAA
326 GATACATTTTGTCCAGAATGAATGCCAAACTA-GTGCACACATAAAGATTAGATACA--TATAAA
** *
84060 ATGTCTCGAT
388 AACTCTCAAT
*
84070 CCCAAAAACATCGAAACAAATAATTATAATGTAATAGGT-AATTTTACAATATAACCGGTGGAAA
1 -CCAAAAACATCGAAACAAATAATTACAATGTAATAGGTAAATTTT-CAATATAACCGGTGGAAA
* * *
84134 TATACCGGTTTTATGAGAGAATATGTATACATAATGTATCGACACTTTTAAAATTTGTGTCGATA
64 TATACCGGTTTTATGAGAGAATAGGTATACATAATGTATCAACACTTTCAAAATTTGTGTCGATA
* * *
84199 CATTTTGTCCAGAATGAATG-TCAAACTAGGTGCACGCATAAAGTGTCGATATATTTATAAAAAG
129 CATTTTGTCCAGAATGAATGCCCAAACTAGGTGCACGCATAAAGTGTCGATACATTTATAAAAAA
* * *
84263 TATCAACCCCAAAAACATCGAAACCAATAATTATAATGTAATAGGTAATTTTTCAATATAACCGG
194 TATCAACCCCAAAAACATCGAAACCAATAATTACAATGTAATAGGTAAATTTGCAATATAACCGG
* * * * *
84328 TATAAATATACCTGTTTAATTAGAAAATAGGTCA-GCATAATGTTTCGACAC-TTTATAAATTGG
259 TAGAAATATACCGGTTTAATGAGAAAATAGGT-ATACATAATGTATCGACACTTTTA-AAATTGG
*
84391 TATCGATACTTTTT
322 TATCGATACATTTT
84405 TTAAATTACG
Statistics
Matches: 629, Mismatches: 79, Indels: 37
0.84 0.11 0.05
Matches are distributed among these distances:
384 5 0.01
385 208 0.33
386 118 0.19
387 3 0.00
390 2 0.00
396 1 0.00
397 1 0.00
399 6 0.01
400 160 0.25
401 125 0.20
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (397 bp):
CCAAAAACATCGAAACAAATAATTACAATGTAATAGGTAAATTTTCAATATAACCGGTGGAAATA
TACCGGTTTTATGAGAGAATAGGTATACATAATGTATCAACACTTTCAAAATTTGTGTCGATACA
TTTTGTCCAGAATGAATGCCCAAACTAGGTGCACGCATAAAGTGTCGATACATTTATAAAAAATA
TCAACCCCAAAAACATCGAAACCAATAATTACAATGTAATAGGTAAATTTGCAATATAACCGGTA
GAAATATACCGGTTTAATGAGAAAATAGGTATACATAATGTATCGACACTTTTAAAATTGGTATC
GATACATTTTGTCCAGAATGAATGCCAAACTAGTGCACACATAAAGATTAGATACATATAAAAAC
TCTCAAT
Found at i:85907 original size:6 final size:6
Alignment explanation
Indices: 85893--85926 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
85883 TAAGCGGTCA
* *
85893 ATGAAG ATGACG ATGAAG ATGAAG ATGACG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
85927 TGATCCAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.44, C:0.06, G:0.32, T:0.18
Consensus pattern (6 bp):
ATGAAG
Found at i:88759 original size:15 final size:15
Alignment explanation
Indices: 88739--88768 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
88729 ATGTATCGAC
88739 ACATAAAGTTTCCAA
1 ACATAAAGTTTCCAA
88754 ACATAAAGTTTCCAA
1 ACATAAAGTTTCCAA
88769 CAAAGTGTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (15 bp):
ACATAAAGTTTCCAA
Found at i:89227 original size:199 final size:198
Alignment explanation
Indices: 88876--89814 Score: 1106
Period size: 199 Copynumber: 4.8 Consensus size: 198
88866 TAGGTAAACA
* * *
88876 AAAGTGTCGATACATTTATTATAAGAATCGATCCCAAAAACATCGAAACATATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
** *
88941 ATAGGTAAATTTCCAATGTAAATGATAGAAATATACCGG-TTAATTAGAAAATAGGTCTACATAA
66 ATAGGTAAATTT-CAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAA
* *
89005 TGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGTCAAACGGGGTGTA
130 TGTATCGACACTTTTT-AATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAACGGGGTGCA
* *
89070 CTCAC
194 CACAT
* * * *
89075 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAATATCGAATCCGATAATTACAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
* * * * * * *
89140 ATAGGTAAATTATCAATGTAACCGATATAAATTTACCGGTTTTATAAGAAAACATGTCTACATAA
66 ATAGGTAAATT-TCAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAA
* * *
89205 TGTATCGACACTTTTTAATTTGTGTCGATACGTTTTGTCCAGAATGATTGCCCAAC--GGTGCA-
130 TGTATCGACACTTTTTAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAACGGGGTGCAC
89267 ACAT
195 ACAT
*
89271 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAAATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
* **
89336 ATAGGTAAATTTCTAATGTAACCGGTAGATATATACCGGTTTAATTAGAAAATAGGTAAACATAA
66 ATAGGTAAATTTC-AATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAA
* * * * *
89401 TGTATCGGCACTTTTTAAATTGTGTCGATACTTGTTGTCCAGAATGAATGCCCAACCGAGGTGCA
130 TGTATCGACACTTTTTAATTTGTGTCGATACTTTTTGTCCAGAATGAATG-CCAAACGGGGTGCA
*
89466 CGCAT
194 CACAT
*
89471 AAAGTGTCGATACATTTATTAAAAGTAGCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
* * *
89536 ATAGGTAAATTTCCAATGTAACCGGTAAAAATATATCAG-TTAATTAGAAAATAGGTCTACAT-A
66 ATAGGTAAATTT-CAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAA
* *
89599 ---AT-G--------T-A------TCGATACTTTTTGTCCAGAATGAATGGCAAAGGGGGTGCAC
130 TGTATCGACACTTTTTAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAACGGGGTGCAC
89645 ACAT
195 ACAT
* * * *
89649 AAAGTGTCGATATA-TT-TTAAAATGTATCGCTCCCAAAAACATCGAAACTGATAATTACAATGT
1 AAAGTGTCGATACATTTATTAAAA-GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGT
* * * * * * *
89712 AATAGGTAAATTAAT-AATGTAACCGGTATAAATTTACTGGTTTTATGAGAAAATAAGTGTACAT
65 AATAGGTAAATT--TCAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACAT
* * *
89776 AATGTATCAACACTTTTTAAATTTGTATCGATATTTTTT
128 AATGTATCGACACTTTTT-AATTTGTGTCGATACTTTTT
89815 AAAATACGCG
Statistics
Matches: 632, Mismatches: 75, Indels: 66
0.82 0.10 0.09
Matches are distributed among these distances:
176 6 0.01
177 70 0.11
178 46 0.07
179 27 0.04
182 2 0.00
185 1 0.00
186 1 0.00
191 1 0.00
193 1 0.00
194 1 0.00
195 4 0.01
196 159 0.25
197 9 0.01
198 1 0.00
199 165 0.26
200 137 0.22
201 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (198 bp):
AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
ATAGGTAAATTTCAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAAT
GTATCGACACTTTTTAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAACGGGGTGCACA
CAT
Found at i:89345 original size:196 final size:197
Alignment explanation
Indices: 88876--89813 Score: 1086
Period size: 196 Copynumber: 4.8 Consensus size: 197
88866 TAGGTAAACA
* * *
88876 AAAGTGTCGATACATTTATTATAAGAATCGATCCCAAAAACATCGAAACATATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
** *
88941 ATAGGTAAATTTCCAATGTAAATGATAGAAATATACCGG-TTAATTAGAAAATAGGTCTACATAA
66 ATAGGTAAATTT-CAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAA
* *
89005 TGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGTCAAA-CGGGGTGT
130 TGTATCGACACTTTTT-AATTTGTGTCGATAC-TTTTGTCCAGAATGAATGCCAAAGC-GGGTGC
* *
89069 ACTCAC
192 ACACAT
* * * *
89075 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAATATCGAATCCGATAATTACAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
* * * * * * *
89140 ATAGGTAAATTATCAATGTAACCGATATAAATTTACCGGTTTTATAAGAAAACATGTCTACATAA
66 ATAGGTAAATT-TCAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAA
* *
89205 TGTATCGACACTTTTTAATTTGTGTCGATACGTTTTGTCCAGAATGATTGCCCAA-C-GGTGCA-
130 TGTATCGACACTTTTTAATTTGTGTCGATAC-TTTTGTCCAGAATGAATGCCAAAGCGGGTGCAC
89267 ACAT
194 ACAT
*
89271 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAAATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
* **
89336 ATAGGTAAATTTCTAATGTAACCGGTAGATATATACCGGTTTAATTAGAAAATAGGTAAACATAA
66 ATAGGTAAATTTC-AATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAA
* * * *
89401 TGTATCGGCACTTTTTAAATTGTGTCGATACTTGTTGTCCAGAATGAATGCCCAACCGAGGTGCA
130 TGTATCGACACTTTTTAATTTGTGTCGATACTT-TTGTCCAGAATGAATGCCAAAGCG-GGTGCA
*
89466 CGCAT
193 CACAT
*
89471 AAAGTGTCGATACATTTATTAAAAGTAGCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
* * *
89536 ATAGGTAAATTTCCAATGTAACCGGTAAAAATATATCAG-TTAATTAGAAAATAGGTCTACATAA
66 ATAGGTAAATTT-CAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAA
* *
89600 TGTATCG--A-----T-A-------C--T--TTTTGTCCAGAATGAATGGCAAAGGGGGTGCACA
130 TGTATCGACACTTTTTAATTTGTGTCGATACTTTTGTCCAGAATGAATGCCAAAGCGGGTGCACA
89646 CAT
195 CAT
* * * *
89649 AAAGTGTCGATATA-TT-TTAAAATGTATCGCTCCCAAAAACATCGAAACTGATAATTACAATGT
1 AAAGTGTCGATACATTTATTAAAA-GTATCGATCCCAAAAACATCGAAACAGATAATTATAATGT
* * * * * * *
89712 AATAGGTAAATTAAT-AATGTAACCGGTATAAATTTACTGGTTTTATGAGAAAATAAGTGTACAT
65 AATAGGTAAATT--TCAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACAT
* * *
89776 AATGTATCAACACTTTTTAAATTTGTATCGATATTTTT
128 AATGTATCGACACTTTTT-AATTTGTGTCGATACTTTT
89814 TAAAATACGC
Statistics
Matches: 637, Mismatches: 69, Indels: 67
0.82 0.09 0.09
Matches are distributed among these distances:
176 6 0.01
177 70 0.11
178 50 0.08
179 21 0.03
180 3 0.00
182 1 0.00
184 1 0.00
185 1 0.00
187 1 0.00
191 1 0.00
192 1 0.00
194 1 0.00
195 4 0.01
196 164 0.26
197 7 0.01
198 4 0.01
199 163 0.26
200 137 0.22
201 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (197 bp):
AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTA
ATAGGTAAATTTCAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCTACATAAT
GTATCGACACTTTTTAATTTGTGTCGATACTTTTGTCCAGAATGAATGCCAAAGCGGGTGCACAC
AT
Found at i:89606 original size:395 final size:394
Alignment explanation
Indices: 88872--89615 Score: 1134
Period size: 395 Copynumber: 1.9 Consensus size: 394
88862 AGATTAGGTA
* *
88872 AACAAAAGTGTCGATACATTTATTATAAGAATCGATCCCAAAAACATCGAAACATATAATTATAA
1 AACAAAAGTGTCGATACATTTATTAAAAGAATCGATCCCAAAAACATCGAAACAAATAATTATAA
* **
88937 TGTAATAGGTAAATTTCCAATGTAAATGATAGAAATATACCGGTTAATTAGAAAATAGGTCTACA
66 TGTAATAGGTAAATTTCCAATGTAAACGATAGAAATATACCGGTTAATTAGAAAATAGGTAAACA
* * *
89002 TAATGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGTCAAACGGGGT
131 TAATGTATCGACACTTTTTAAATTTGTGTCGATACTTGTTGTCCAGAATGAATGCCAAACGAGGT
* * * * * *
89067 GTACTCACAAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAATATCGAATCCGATAATT
196 GCACGCACAAAGTGTCGATACATTTATTAAAAGTAGCGATCCCAAAAACATCGAAACAGATAATT
* * * * *
89132 ACAATGTAATAGGTAAATTATCAATGTAACCGATATAAATTTACCGGTTTTATAAGAAAACATGT
261 ACAATGTAATAGGTAAATTATCAATGTAACCGATAAAAATATACCAGTTTAATAAGAAAACAGGT
89197 CTACATAATGTATCGACACTTTTTAATTTGTGTCGATACGTTTTGTCCAGAATGATTGCCCAACG
326 CTACATAATGTATCGACACTTTTTAATTTGTGTCGATACGTTTTGTCCAGAATGATTGCCCAACG
89262 GTGC
391 GTGC
*
89266 AACATAAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACAAATAATTATA
1 AACA-AAAGTGTCGATACATTTATTAAAAGAATCGATCCCAAAAACATCGAAACAAATAATTATA
* * * *
89331 ATGTAATAGGTAAATTTCTAATGTAACCGGTAGATATATACCGGTTTAATTAGAAAATAGGTAAA
65 ATGTAATAGGTAAATTTCCAATGTAAACGATAGAAATATACCGG-TTAATTAGAAAATAGGTAAA
* *
89396 CATAATGTATCGGCACTTTTTAAA-TTGTGTCGATACTTGTTGTCCAGAATGAATGCCCAACCGA
129 CATAATGTATCGACACTTTTTAAATTTGTGTCGATACTTGTTGTCCAGAATGAATG-CCAAACGA
*
89460 GGTGCACGCATAAAGTGTCGATACATTTATTAAAAGTAGCGATCCCAAAAACATCGAAACAGATA
193 GGTGCACGCACAAAGTGTCGATACATTTATTAAAAGTAGCGATCCCAAAAACATCGAAACAGATA
* * * * *
89525 ATTATAATGTAATAGGTAAATT-TCCAATGTAACCGGTAAAAATATATCAG-TTAATTAGAAAAT
258 ATTACAATGTAATAGGTAAATTAT-CAATGTAACCGATAAAAATATACCAGTTTAATAAGAAAAC
*
89588 AGGTCTACATAATGTATCGATACTTTTT
322 AGGTCTACATAATGTATCGACACTTTTT
89616 GTCCAGAATG
Statistics
Matches: 313, Mismatches: 33, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
394 4 0.01
395 163 0.52
396 146 0.47
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (394 bp):
AACAAAAGTGTCGATACATTTATTAAAAGAATCGATCCCAAAAACATCGAAACAAATAATTATAA
TGTAATAGGTAAATTTCCAATGTAAACGATAGAAATATACCGGTTAATTAGAAAATAGGTAAACA
TAATGTATCGACACTTTTTAAATTTGTGTCGATACTTGTTGTCCAGAATGAATGCCAAACGAGGT
GCACGCACAAAGTGTCGATACATTTATTAAAAGTAGCGATCCCAAAAACATCGAAACAGATAATT
ACAATGTAATAGGTAAATTATCAATGTAACCGATAAAAATATACCAGTTTAATAAGAAAACAGGT
CTACATAATGTATCGACACTTTTTAATTTGTGTCGATACGTTTTGTCCAGAATGATTGCCCAACG
GTGC
Found at i:89704 original size:177 final size:180
Alignment explanation
Indices: 89425--89793 Score: 478
Period size: 177 Copynumber: 2.1 Consensus size: 180
89415 TTAAATTGTG
* * *
89425 TCGATACTTGTTGTCCAGAATGAATGCCCAACCGAGGTGCACGCATAAAGTGTCGATACATTTAT
1 TCGATACTTTTTGTCCAGAATGAATGCCCAAACGAGGTGCACACATAAAGTGTCGATACATTTAT
* **
89490 TAAAAGTAGCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAAATTTCCAATGT
66 TAAAAGTAGCGATCCCAAAAACATCGAAACAGATAATTACAATGTAATAGGTAAATTAACAATGT
* *
89555 AACCGGTAAAAATATA-TCAG-TTAATTAGAAAATAGGTCTACATAATGTA
131 AACCGGTAAAAATATACT-AGTTTAATGAGAAAATAAGTCTACATAATGTA
* * * *
89604 TCGATACTTTTTGTCCAGAATGAATG-GCAAAGGGGGTGCACACATAAAGTGTCGATATA-TT-T
1 TCGATACTTTTTGTCCAGAATGAATGCCCAAACGAGGTGCACACATAAAGTGTCGATACATTTAT
* * * *
89666 TAAAATGTATCGCTCCCAAAAACATCGAAACTGATAATTACAATGTAATAGGTAAATTAATAATG
66 TAAAA-GTAGCGATCCCAAAAACATCGAAACAGATAATTACAATGTAATAGGTAAATTAACAATG
* * * * *
89731 TAACCGGTATAAATTTACTGGTTTTATGAGAAAATAAGTGTACATAATGTA
130 TAACCGGTAAAAATATACTAGTTTAATGAGAAAATAAGTCTACATAATGTA
* *
89782 TCAACACTTTTT
1 TCGATACTTTTT
89794 AAATTTGTAT
Statistics
Matches: 164, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
176 6 0.04
177 70 0.43
178 63 0.38
179 25 0.15
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (180 bp):
TCGATACTTTTTGTCCAGAATGAATGCCCAAACGAGGTGCACACATAAAGTGTCGATACATTTAT
TAAAAGTAGCGATCCCAAAAACATCGAAACAGATAATTACAATGTAATAGGTAAATTAACAATGT
AACCGGTAAAAATATACTAGTTTAATGAGAAAATAAGTCTACATAATGTA
Found at i:94295 original size:199 final size:197
Alignment explanation
Indices: 93890--94552 Score: 789
Period size: 200 Copynumber: 3.3 Consensus size: 197
93880 AAGTATCGAC
* * * *
93890 CCCAAAAACATCGAAACCAATAATTATAATATAATAGGTAAATTAACAATATAACCGGTATAAAT
1 CCCAAAAACATCGAAACCGATAATTATAATATAATAGGTAAATTTACAATGTAACTGGTATAAAT
* * * * *
93955 ATACCATTTAATTACAAAAAAGTCAACATAATGTATCGAA-AATTATGT-AATTTGCGTCAATAC
66 ATACCATTTAATTAC-AAAATGTCAACATAATGTATC-AACACTT-TTTAAATTTGTGTCGATAC
** * * *
94018 TATG-TGTCCAGAATGAATGCCCAACCGAGGTGCACGCATAAAGTGTCGATATACTTATAAAA-A
128 T-TGTTGTCCAGAATGAATGCCCAAATGAGGTACACGCATAAAGTGTCGATACA-TT-TAAAATT
*
94081 ATATCGAT
190 ATATTGAT
* *
94089 CCCAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACTGATATAAAT
1 CCCAAAAACATCGAAACCGATAATTATAATATAATAGGTAAATTTACAATGTAACTGGTATAAAT
* * *
94154 AGAACGATTTAATTATAAAAGTGATCAACATAATGTATCAACACTTTTTAAATTTGTGTCGATAC
66 A-TACCATTTAATTACAAAA-TG-TCAACATAATGTATCAACACTTTTTAAATTTGTGTCGATAC
* * * * * *
94219 TTGTTGTCTAGAATCAATCCCCAAATGGGGTATACGCATAAAGTGTCGATACATTTAAAATTGTA
128 TTGTTGTCCAGAATGAATGCCCAAATGAGGTACACGCATAAAGTGTCGATACATTTAAAATTATA
94284 TTGAT
193 TTGAT
* * * * *
94289 CCAAAAAACATCAAAATCGATAATTATAATATAGTAGGTAAATTTGCAATGTAACTGGTATAAAT
1 CCCAAAAACATCGAAACCGATAATTATAATATAATAGGTAAATTTACAATGTAACTGGTATAAAT
* * * *
94354 ATACCAGTTTTATGAGAGAATATGTCAACATAATGTATCGACACTTTTTAAATTTGTGTCGATAC
66 ATACCA-TTTAATTACA-AA-ATGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCGATAC
* *
94419 TT-TTTTCCAGAATGAATGCCC-AATGAGGTACACACATAAAGTGTCGATACATTTAAAATTATA
128 TTGTTGTCCAGAATGAATGCCCAAATGAGGTACACGCATAAAGTGTCGATACATTTAAAATTATA
94482 TTGAT
193 TTGAT
* * * * * *
94487 CCCAAAAGCATCGAAACCGATAATTATAATGTAATAGGTAAATTTGCAATATTACCGGTATAAAT
1 CCCAAAAACATCGAAACCGATAATTATAATATAATAGGTAAATTTACAATGTAACTGGTATAAAT
94552 A
66 A
94553 AATCGGTTTA
Statistics
Matches: 398, Mismatches: 56, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
198 100 0.25
199 87 0.22
200 134 0.34
201 76 0.19
202 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (197 bp):
CCCAAAAACATCGAAACCGATAATTATAATATAATAGGTAAATTTACAATGTAACTGGTATAAAT
ATACCATTTAATTACAAAATGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCGATACTTG
TTGTCCAGAATGAATGCCCAAATGAGGTACACGCATAAAGTGTCGATACATTTAAAATTATATTG
AT
Found at i:94808 original size:11 final size:11
Alignment explanation
Indices: 94792--94816 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94782 ACCAGTCACA
94792 CCGTTTTTTAG
1 CCGTTTTTTAG
94803 CCGTTTTTTAG
1 CCGTTTTTTAG
94814 CCG
1 CCG
94817 CCGCACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.24, G:0.20, T:0.48
Consensus pattern (11 bp):
CCGTTTTTTAG
Found at i:95214 original size:16 final size:16
Alignment explanation
Indices: 95193--95247 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
95183 GGTATTACCC
95193 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
** *
95209 GACCTGTAATGAACCT
1 GACCTGTTTTCAACCT
* *
95225 GACTTGTTTTTAACCT
1 GACCTGTTTTCAACCT
95241 GACCTGT
1 GACCTGT
95248 AAATGATCCG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.36
Consensus pattern (16 bp):
GACCTGTTTTCAACCT
Found at i:95240 original size:32 final size:32
Alignment explanation
Indices: 95191--95264 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
95181 CTGGTATTAC
*
95191 CCGACCTGTTTTCAACCTGACCTGT-AATGAA
1 CCGACTTGTTTTCAACCTGACCTGTAAATGAA
* *
95222 CCTGACTTGTTTTTAACCTGACCTGTAAATGAT
1 CC-GACTTGTTTTCAACCTGACCTGTAAATGAA
95255 CCGACTTGTT
1 CCGACTTGTT
95265 AATGACATGA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 2 0.05
32 29 0.76
33 7 0.18
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (32 bp):
CCGACTTGTTTTCAACCTGACCTGTAAATGAA
Done.