genome.fa.s1479.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001479.1 Hibiscus syriacus cultivar Beakdansim tig00002870_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67358

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--75	33	2.0	33	100	0	134	28	5	26	38	1.80
340--414	25	3.0	25	98	0	141	30	16	20	33	1.94
491--532	3	14.3	3	80	5	50	69	2	2	26	1.13
720--949	43	5.1	43	69	13	149	23	18	30	26	1.98
736--948	87	2.3	92	89	5	319	24	18	30	26	1.98
782--938	46	3.6	45	72	11	139	23	19	30	26	1.98
2021--2053	17	1.9	17	88	11	50	9	12	0	78	0.95
15230--15254	10	2.5	10	100	0	50	0	8	8	84	0.79
15648--15722	25	3.0	25	98	0	141	30	16	20	33	1.94
15801--15842	3	14.3	3	80	5	50	69	2	2	26	1.13
17065--17112	4	12.0	4	82	12	55	72	0	0	27	0.84
17064--17109	16	2.8	18	78	21	64	73	0	0	26	0.83
17066--17112	14	3.5	13	81	13	51	72	0	0	27	0.85
20054--20093	21	2.0	19	90	9	62	22	0	2	75	0.93
20115--20269	67	2.4	65	79	7	172	34	5	2	57	1.35
20163--20258	22	4.2	24	75	18	82	36	4	1	58	1.24
20539--20571	2	16.5	2	100	0	66	48	0	0	51	1.00
20588--20629	16	2.6	16	85	7	59	16	4	0	78	0.91
25083--25169	17	5.2	17	75	17	85	80	5	13	0	0.88
25090--25148	12	5.1	12	76	17	54	79	6	13	0	0.92
25119--25148	13	2.3	13	100	0	60	80	6	13	0	0.91
25083--25169	11	7.6	11	73	13	70	80	5	13	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25085--25177	20	4.7	19	76	18	59	79	5	13	1	0.96
26745--27694	106	9.0	106	87	3	1276	33	24	18	23	1.97
26745--27694	211	4.5	212	86	3	1330	33	24	18	23	1.97
28393--28489	37	2.6	37	86	0	140	41	16	11	30	1.84
28960--29065	22	4.9	21	68	22	60	31	4	1	62	1.27
29097--29143	2	23.5	2	100	0	94	48	0	0	51	1.00
29284--29319	18	1.9	19	88	5	56	30	5	0	63	1.17
29356--29386	2	15.5	2	100	0	62	48	0	0	51	1.00
29433--29468	17	2.2	17	90	5	56	13	8	0	77	0.98
31152--31179	2	14.0	2	100	0	56	50	0	0	50	1.00
34007--34099	12	7.8	12	70	0	69	24	39	20	15	1.91
34023--34102	24	3.3	24	85	0	97	25	40	21	13	1.90
34040--34123	24	3.5	24	85	0	96	27	41	20	10	1.85
37165--37240	39	1.9	40	89	2	118	48	17	5	28	1.68
38988--39012	2	12.5	2	100	0	50	48	0	0	52	1.00
38580--39128	225	2.5	218	84	11	672	28	12	18	40	1.87
39500--39546	18	2.7	17	83	3	58	27	27	8	36	1.86
40636--40688	21	2.5	21	75	6	63	22	26	16	33	1.96
40663--40771	42	2.6	42	85	1	112	35	18	22	23	1.95
40678--40771	21	4.5	21	93	1	145	38	17	23	21	1.93
40760--40874	20	5.7	20	81	2	122	34	26	17	21	1.95
40757--40894	41	3.4	41	83	2	179	36	24	16	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41367--41425	20	3.0	20	84	0	64	15	16	22	45	1.84
43299--43354	20	2.8	20	83	2	69	37	23	23	16	1.93
43338--43434	19	5.6	19	67	22	79	47	20	18	13	1.82
43354--43412	14	3.9	14	74	20	55	50	23	15	10	1.74
43338--43429	33	2.8	33	94	0	157	48	20	17	13	1.80
43473--43546	20	3.8	20	89	1	96	18	25	21	33	1.96
43517--43572	20	2.8	20	88	0	76	23	16	28	32	1.96
43913--44032	42	2.8	42	82	6	118	24	39	15	21	1.91
45413--45451	14	2.8	14	84	0	51	35	0	17	46	1.49
45674--45749	20	3.8	20	89	0	107	15	19	22	42	1.89
45972--46048	20	3.8	20	94	0	127	28	20	27	23	1.99
46038--46089	20	2.5	21	87	3	70	21	23	17	38	1.93
46100--46178	20	4.0	20	96	0	131	22	30	18	27	1.98
46922--46975	24	2.2	24	90	0	81	22	16	20	40	1.91
49499--49590	19	5.4	19	66	24	78	45	14	22	17	1.84
49499--49658	33	4.8	33	92	0	221	46	16	23	13	1.82
49658--49701	19	2.3	19	92	0	70	13	18	27	40	1.88
51242--51321	42	1.9	42	84	0	106	22	17	38	21	1.93
51543--51727	91	2.0	90	88	8	275	47	18	11	22	1.80
53415--53536	20	6.8	19	68	20	84	44	21	22	11	1.84
53446--53536	33	2.7	33	93	1	146	40	25	24	9	1.85
53537--53625	33	2.7	32	82	5	97	12	20	23	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54164--54293	20	6.4	20	83	3	120	23	19	20	37	1.94
54295--54357	21	3.0	20	77	13	65	42	17	19	20	1.89
57083--57121	4	9.5	4	94	5	69	25	25	0	48	1.51
58029--58057	2	14.5	2	100	0	58	48	0	0	51	1.00
62348--62382	3	12.0	3	93	6	63	34	0	0	65	0.93
63918--63963	18	2.6	18	96	0	83	23	13	21	41	1.88

Tables:   1

The End!