Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001480.1 Hibiscus syriacus cultivar Beakdansim tig00002873_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 157423
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:285 original size:18 final size:19
Alignment explanation
Indices: 241--288 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
231 AAATGTCAGT
241 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
260 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
279 T-ATTTTGTAT
1 TAATTTTGTAT
289 GTGAATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 9 0.32
19 19 0.68
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.56
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:1226 original size:195 final size:199
Alignment explanation
Indices: 400--2327 Score: 3343
Period size: 195 Copynumber: 9.9 Consensus size: 199
390 ACATATGGCC
* * * *
400 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
*
465 AC-AAAGTATAATGTAATATGTAATTTTTCAATCTAA-CGGTACAA-TATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
527 TG-ATATGTCTAAATAATG-GTCGAAACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGA
130 -GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGA
589 ATGG-A
194 ATGGAA
*
594 AACAGGGTGCA-CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
658 CAAAAGTATAA-GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT--GAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
720 AATATGTCTAAATAATGTGTCGACACTAATATAG-TTGTGTCGATATTTTTTT-CCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
**
783 TAAA
196 GGAA
787 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCA-CGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
851 CAAAAGTATAATGTAATATGT-A-TTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
914 AA-ATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
977 GGAA
196 GGAA
981 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCA-CGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1045 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAA-CGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
1109 AATATGTCT-AATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
1173 GGAA
196 GGAA
1177 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTG-CGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1241 CAAAAGTATAATGT-ATATGTAATTTTTCAATCTAA-CGGTACAA-TATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
* *
1303 GATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
1368 GGAA
196 GGAA
1372 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTG-CGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
* *
1436 CAAAAG-ATAATAT-ATATGTAATTTTTTCAATCTAATCGGTACAATTATACCGG-TTTATGAGA
66 CAAAAGTATAATGTAATATGTAA-TTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
1498 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTCCCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAA
1563 TGGAA
195 TGGAA
1568 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGT-TCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1632 CAAAAGTATAATGTAATATGTAATTTTTCAATCT-ACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
1696 AATATGTCTAAATAATGTGTCGACACT-A-ATAGTTTGTGTCGATATTTTTTT-CCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
1758 GGAA
196 GGAA
1762 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAA-
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
1826 CCAAAAGTATAAT-TAATATGTAA-TTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
1889 GGATATGTCTAAATAAT-TGTCGACACTAATATAG-TTGTGTCGATATTTTTTTCCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAA
1952 TGGAA
195 TGGAA
1957 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
2022 CAAAAGTATAATGTAATATGT-ATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
2086 GATATGTCTAAATAATGTGTCGACACT-ATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
2150 GG-A
196 GGAA
2153 AACAAGGTGCACCCATAAAGTGTCGA-CCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
2217 CAAAAGTATAATGTAATATGTAATTTTTCCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
66 CAAAAGTATAATGTAATATGTAATTTTT-CAATCTAACCGGTACAATTATACCGGTTTTATGAGA
2282 G-A-ATGTCTAAATAATGTGTCGACACTAATATAGTTTTGTGTCGATA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAG-TTTGTGTCGATA
2328 CTAATTAAAT
Statistics
Matches: 1674, Mismatches: 20, Indels: 77
0.95 0.01 0.04
Matches are distributed among these distances:
191 1 0.00
192 134 0.08
193 141 0.08
194 387 0.23
195 444 0.27
196 406 0.24
197 153 0.09
198 8 0.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (199 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
GGAA
Found at i:3802 original size:3 final size:3
Alignment explanation
Indices: 3776--3864 Score: 81
Period size: 3 Copynumber: 30.0 Consensus size: 3
3766 AAAAGCTGAC
* * * * * **
3776 GAT GAA GAT GAC GAT GAT GA- GAT GAT GAT GAC GAT GAA GCT GGC GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* * *
3823 GAA GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
3865 CCAAACAAGT
Statistics
Matches: 66, Mismatches: 19, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
2 2 0.03
3 64 0.97
ACGTcount: A:0.36, C:0.06, G:0.35, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:5640 original size:182 final size:183
Alignment explanation
Indices: 5301--5641 Score: 549
Period size: 182 Copynumber: 1.9 Consensus size: 183
5291 CTTTCAACAT
* * *
5301 ATTATAATAAAATAGGTAAATTTGCAATATAACGGTATAAATATACTGGTCTTATGCGCGAATAG
1 ATTATAATAAAATAGATAAATTTGCAATATAACGGTATAAATATACCGGTCTTATGAGCGAATAG
* *
5366 GTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAA
66 GTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAA
*
5431 ATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 ATGTGTCGATACCATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
** * * * *
5484 ATTATAATGTAATAGATAATTTTGTAATA-ACCGGTATAAATATACCGGTTTTATGAGCGAATAG
1 ATTATAATAAAATAGATAAATTTGCAATATAACGGTATAAATATACCGGTCTTATGAGCGAATAG
*
5548 GTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAA
66 GTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAA
*
5613 ATGTGTCGATACCATTTTAAAAAGTGTCG
131 ATGTGTCGATACCATTTAAAAAAGTGTCG
5642 GTAATTTGAA
Statistics
Matches: 144, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
182 120 0.83
183 24 0.17
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (183 bp):
ATTATAATAAAATAGATAAATTTGCAATATAACGGTATAAATATACCGGTCTTATGAGCGAATAG
GTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAA
ATGTGTCGATACCATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:8148 original size:23 final size:23
Alignment explanation
Indices: 8122--8180 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
8112 GGTAAACATG
8122 ATGTAATAGGTAGCCCTTATATA
1 ATGTAATAGGTAGCCCTTATATA
* **
8145 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCCCTTATATA
8168 ATGTAATAGGTAG
1 ATGTAATAGGTAG
8181 TGGTTATATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.37
Consensus pattern (23 bp):
ATGTAATAGGTAGCCCTTATATA
Found at i:8187 original size:23 final size:23
Alignment explanation
Indices: 8122--8189 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
8112 GGTAAACATG
**
8122 ATGTAATAGGTAGCCCTTATATA
1 ATGTAATAGGTAGTGCTTATATA
*
8145 ATGTAATAGGTA-TCGTTTATATA
1 ATGTAATAGGTAGT-GCTTATATA
*
8168 ATGTAATAGGTAGTGGTTATAT
1 ATGTAATAGGTAGTGCTTATAT
8190 GTAAAGTGTC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 38 0.97
24 1 0.03
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.40
Consensus pattern (23 bp):
ATGTAATAGGTAGTGCTTATATA
Found at i:8517 original size:21 final size:22
Alignment explanation
Indices: 8471--8517 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
8461 TAATTACATA
8471 ACTTTTAAAAAAAGTATCGATC
1 ACTTTTAAAAAAAGTATCGATC
* * *
8493 -CTTTTTATAAAAGTATGGA-C
1 ACTTTTAAAAAAAGTATCGATC
8513 ACTTT
1 ACTTT
8518 CAATATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (22 bp):
ACTTTTAAAAAAAGTATCGATC
Found at i:8591 original size:22 final size:23
Alignment explanation
Indices: 8535--8597 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
8525 ATAGGTAAAC
*
8535 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
8558 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
8581 ATAT-ATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
8598 TGGTTATATG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
22 12 0.34
23 23 0.66
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:8604 original size:22 final size:23
Alignment explanation
Indices: 8535--8606 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
8525 ATAGGTAAAC
* **
8535 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
8558 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
8581 ATAT-ATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
8603 ATAT
1 ATAT
8607 GTAAAGTGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
22 19 0.45
23 23 0.55
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:8823 original size:422 final size:417
Alignment explanation
Indices: 8022--8838 Score: 1457
Period size: 422 Copynumber: 1.9 Consensus size: 417
8012 AATTCGCAGT
*
8022 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAGTATCGATCCTTTTTATAAA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAACTTTTAAAAAGTATCGATCCTTTTTATAAA
8087 AAGTATGGACACTTTCAATATAATAGGTAAACATGATGTAATAGGTAGCCCTTATATAATGTAAT
66 AAGTATGGACACTTTCAATATAATAGGTAAACATGATGTAATAGGTAGCCCTTATATAATGTAAT
8152 AGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATGTAAAGTGTCTATCCTTTTTATAAAAG
131 AGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATGTAAAGTGTCTATCCTTTTTATAAAAG
8217 TGTCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTGAGTGAGTTTAAGATATT
196 TGTCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTGAGTGAGTTTAAGATATT
* *
8282 AATTAGTAATATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAA
261 AATTAGTAATATAGGCGTATAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAA
8347 AAATTCTAAATAATATTTAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATT-A
326 AAATTCTAAATAATATTTAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
8411 ATCAATATTGTAGGTGGAAAACATGAA
391 ATCAATATTGTAGGTGGAAAACATGAA
8438 ACACTGTTAAAAAAATTGAAACAT-AATTACATAACTTTTAAAAAAAGTATCGATCCTTTTTAT-
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAACTTTT--AAAAAGTATCGATCCTTTTTATA
8501 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
64 AAAAGTATGGACACTTTCAATATAATAGGTAAAC--ATGATGTAATAGGTAGCCCTTATATAATG
8566 TAATAGGTATCGTTTATAT-ATGTAATAGGTAGTGGTTATATGTAAAGTGTCTATCCTTTTTATA
127 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATGTAAAGTGTCTATCCTTTTTATA
8630 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
192 AAAGTGT-CATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATC-TTTGAGTGAG-TTTA
8695 AGATATTAATTTAGTAATTATAGGCGTATAATGATTTATTTTTTACGTTACGATATATATTATTA
254 AGATATTAA-TTAGTAA-TATAGGCGTATAATGATTTATTTTTTACGTTACGATATATATTATTA
*
8760 TTAAATTAAAAATTCT-AAT-ATATTTTAAAATATCAAAACAATCAAATAATTTTTTGTGCAAAT
317 TTAAATTAAAAATTCTAAATAATA-TTT-AAATATAAAAACAATCAAATAATTTTTTGTGCAAAT
8823 GAAATTATTAAATCAA
380 GAAATTATTAAATCAA
8839 ATAATTCAAA
Statistics
Matches: 385, Mismatches: 4, Indels: 17
0.95 0.01 0.04
Matches are distributed among these distances:
415 14 0.04
416 58 0.15
417 74 0.19
418 89 0.23
419 10 0.03
420 16 0.04
421 13 0.03
422 105 0.27
423 6 0.02
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (417 bp):
ACACTGTTAAAAAAATTGAAACATAAATTACATAACTTTTAAAAAGTATCGATCCTTTTTATAAA
AAGTATGGACACTTTCAATATAATAGGTAAACATGATGTAATAGGTAGCCCTTATATAATGTAAT
AGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATGTAAAGTGTCTATCCTTTTTATAAAAG
TGTCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTGAGTGAGTTTAAGATATT
AATTAGTAATATAGGCGTATAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAA
AAATTCTAAATAATATTTAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
ATCAATATTGTAGGTGGAAAACATGAA
Found at i:9187 original size:18 final size:18
Alignment explanation
Indices: 9166--9202 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9156 GTAATTGGAG
9166 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
9184 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
9202 T
1 T
9203 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:9210 original size:24 final size:24
Alignment explanation
Indices: 9158--9204 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
9148 TTTCATATGT
* *
9158 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
9182 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
9205 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:9531 original size:37 final size:38
Alignment explanation
Indices: 9458--9542 Score: 136
Period size: 37 Copynumber: 2.2 Consensus size: 38
9448 TACGATGCTC
*
9458 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCA-ATGATGCCAAGCAAAAGGAA
*
9497 ATCAAAATCCAAATCTC-ATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCAATGATGCCAAGCAAAAGGAA
9534 ATCAAAATC
1 ATCAAAATC
9543 TACAACTGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
37 28 0.64
39 16 0.36
ACGTcount: A:0.48, C:0.21, G:0.14, T:0.16
Consensus pattern (38 bp):
ATCAAAATCCAAAGCTCAATGATGCCAAGCAAAAGGAA
Found at i:9968 original size:23 final size:23
Alignment explanation
Indices: 9937--10009 Score: 94
Period size: 23 Copynumber: 3.2 Consensus size: 23
9927 ATAGGTAAAC
*
9937 ATATGATGTAATAGGTAGC-TCTT
1 ATATAATGTAATAGGTAGCGT-TT
*
9960 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGTTT
* *
9983 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGTTT
10006 ATAT
1 ATAT
10010 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 43 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTTT
Found at i:11629 original size:19 final size:19
Alignment explanation
Indices: 11613--11660 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
11603 ACCGTAGATT
11613 ATCGCAACGAATTTAGAAA
1 ATCGCAACGAATTTAGAAA
*
11632 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTAGAAA
*
11651 ATCACAACGA
1 ATCGCAACGA
11661 CAACTGTAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.19
Consensus pattern (19 bp):
ATCGCAACGAATTTAGAAA
Found at i:11680 original size:22 final size:22
Alignment explanation
Indices: 11563--11681 Score: 79
Period size: 22 Copynumber: 5.7 Consensus size: 22
11553 GCAACGAATT
* *
11563 TAGAAAATCGAAACGACAACTG
1 TAGAATATCGCAACGACAACTG
* * *
11585 TAGACTATCGCAACAACAACCG
1 TAGAATATCGCAACGACAACTG
* *
11607 TAGATTATCGCAACG--AA-TT
1 TAGAATATCGCAACGACAACTG
* *
11626 TAGAAAATCGCAACG--AA-TT
1 TAGAATATCGCAACGACAACTG
* * *
11645 TGGAAAATCACAACGACAACTG
1 TAGAATATCGCAACGACAACTG
*
11667 TAGACTATCGCAACG
1 TAGAATATCGCAACG
11682 CGAATTTGCG
Statistics
Matches: 76, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
19 30 0.39
20 2 0.03
21 2 0.03
22 42 0.55
ACGTcount: A:0.43, C:0.22, G:0.17, T:0.18
Consensus pattern (22 bp):
TAGAATATCGCAACGACAACTG
Found at i:12892 original size:15 final size:15
Alignment explanation
Indices: 12872--12901 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12862 ATAATTATAG
12872 ATATATTATTATAAA
1 ATATATTATTATAAA
*
12887 ATATATTATTTTAAA
1 ATATATTATTATAAA
12902 TTATTTTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATATTATTATAAA
Found at i:23738 original size:16 final size:16
Alignment explanation
Indices: 23699--23730 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23689 ATTAATTAAA
*
23699 AATTTAAATATAATAT
1 AATTAAAATATAATAT
23715 AATTAAAATATAATAT
1 AATTAAAATATAATAT
23731 TTATAAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTAAAATATAATAT
Found at i:24280 original size:303 final size:302
Alignment explanation
Indices: 23734--24336 Score: 967
Period size: 303 Copynumber: 2.0 Consensus size: 302
23724 ATAATATTTA
* *
23734 TAAAACATTAGTTTTTAAGATAAATTATATCATTGACCACCTAACTATTTACTCTTCTACTTTAA
1 TAAAACATTAGTTTTTAAGATAAATTATATCATTGACCACCTAAATATTTACCCTTCTACTTTAA
* * * * * *
23799 CTACCAAAATTTTATTTTTGTCAATCAGGTCACCTAATTATTTAAATCTTTTCGATCAAATCACC
66 CTACCAAAATTTTAATTTTGTCAATAAAGTCACCTAACTATTTAAATATTTTCAATCAAATCACC
* *
23864 TCTCGTTAAATATTAACGGAGGAGATGATGTTACAGTTAATAAAATTTATATAATTACACATTTA
131 TCTCGTTAAAAATTAACGGAGGAGATGATGTGACAGTTAATAAAATTTATATAATTACACATTTA
23929 GTCCTCATTACTTACACAATCAATTAATTTGATCCTAATTTTTATTTAATTCAATAAATTTAATC
196 GTCCTCATTACTTACACAATCAATTAATTTGATCCTAATTTTTATTTAATTCAATAAATTTAATC
* *
23994 ATCAATCCGATAGTGACATGTGTCATTGTATTATTAGATGGT
261 ATCAATCCGATAGTGACATGTGTCACTGTATGATTAGATGGT
* *
24036 TAAAACATTAGTTTTTAGGGTAAATTATA-CTATTGACCACCTAAATATTTACCCCTTCTACTTT
1 TAAAACATTAGTTTTTAAGATAAATTATATC-ATTGACCACCTAAATATTTA-CCCTTCTACTTT
** * * *
24100 AACTACCAATTTTTTAATTTTGTCAATAAAGTTACTTAACTATTTAAATATTTTCAATCAAGTCA
64 AACTACCAAAATTTTAATTTTGTCAATAAAGTCACCTAACTATTTAAATATTTTCAATCAAATCA
24165 CCTGC-CGTTAAAAATTAACGGAGGAGATGATGTGACAGTTAATAAAATTTATATAATTACACAT
129 CCT-CTCGTTAAAAATTAACGGAGGAGATGATGTGACAGTTAATAAAATTTATATAATTACACAT
* *
24229 TTAGTCCTCATTACTTACACATTCTATTAATTTGATCCTAATTTTTATTTAATTCAATAAATTTA
193 TTAGTCCTCATTACTTACACAATCAATTAATTTGATCCTAATTTTTATTTAATTCAATAAATTTA
*
24294 ATCCTCAATCCGATAGTGACATGTGTCACTGTATGATTAGATG
258 ATCATCAATCCGATAGTGACATGTGTCACTGTATGATTAGATG
24337 TTTTTAAATA
Statistics
Matches: 276, Mismatches: 22, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
301 1 0.00
302 46 0.17
303 228 0.83
304 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (302 bp):
TAAAACATTAGTTTTTAAGATAAATTATATCATTGACCACCTAAATATTTACCCTTCTACTTTAA
CTACCAAAATTTTAATTTTGTCAATAAAGTCACCTAACTATTTAAATATTTTCAATCAAATCACC
TCTCGTTAAAAATTAACGGAGGAGATGATGTGACAGTTAATAAAATTTATATAATTACACATTTA
GTCCTCATTACTTACACAATCAATTAATTTGATCCTAATTTTTATTTAATTCAATAAATTTAATC
ATCAATCCGATAGTGACATGTGTCACTGTATGATTAGATGGT
Found at i:26517 original size:23 final size:23
Alignment explanation
Indices: 26486--26529 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
26476 TAAACGATCG
26486 AAAACGTGTCATAAAGACAGAGA
1 AAAACGTGTCATAAAGACAGAGA
* *
26509 AAAATGTGTCATAAAGGCAGA
1 AAAACGTGTCATAAAGACAGA
26530 ATTATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.50, C:0.11, G:0.23, T:0.16
Consensus pattern (23 bp):
AAAACGTGTCATAAAGACAGAGA
Found at i:29132 original size:21 final size:22
Alignment explanation
Indices: 29089--29152 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 22
29079 CTGCGAGGTT
* *
29089 CTTCGGGACAATTCTACGCGGTC
1 CTTCGGGAC-ATTCTATGTGGTC
29112 CTTCGGGACA-TCTATGTGGTC
1 CTTCGGGACATTCTATGTGGTC
* * *
29133 ATTCGAGACATTTTATGTGG
1 CTTCGGGACATTCTATGTGG
29153 CACTTCGTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 17 0.49
22 9 0.26
23 9 0.26
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.33
Consensus pattern (22 bp):
CTTCGGGACATTCTATGTGGTC
Found at i:32121 original size:191 final size:189
Alignment explanation
Indices: 31693--32358 Score: 1078
Period size: 191 Copynumber: 3.5 Consensus size: 189
31683 CAACTAGTTG
* * *
31693 TTGGTATATATCCATATTGTGTTCCTATTTTTTTATGTGCTTAAATATTAATTTCTACTGATTTT
1 TTGGTAGATATACATATTGTGTTCCTA-TTTTTTATGTGCTTAAATATTAATTTCTACTAATTTT
*
31758 AAATATTAACAACTAAATTTTGGCATGATTTTATATTTCTAGTTTCTTCCATTCGTAAACACCAG
65 AAATATTAACAACTAAATTTTGGCATGATTTTATATTTCTAGTTTCCTCCATTCGTAAACACCAG
* * *
31823 GATTCGAACTTCTAAC---C-T--T--TCTAACACCTTATCCCACTAGACTAACTGATTA
130 GATTCAAACTTCTACCTTTCTTAATGATCTAACACCTCATCCCACTAGACTAACTGATTA
31875 TTGGTAGATATACATATTGTGTTCCTATTTTTTATGTGCTTAAATATTAATTTCTACTAATTTTA
1 TTGGTAGATATACATATTGTGTTCCTATTTTTTATGTGCTTAAATATTAATTTCTACTAATTTTA
*
31940 AATATTAACAACTAAATTTTGGCATGATTTTATATTTCTAGTTTCCTCCATTCGTAAACAGCAGG
66 AATATTAACAACTAAATTTTGGCATGATTTTATATTTCTAGTTTCCTCCATTCGTAAACACCAGG
32005 ATTCAAACTTCTAGCCTTTCTTAAATGATCTAACACCTCATCCCACTAGACTAACTGATTA
131 ATTCAAACTTCTA-CCTTTCTT-AATGATCTAACACCTCATCCCACTAGACTAACTGATTA
32066 TTGGTAGATATACATATTGTGTTCCTATTTTTTATGTGCTTAAATATTAATTTCTACTAATTTTA
1 TTGGTAGATATACATATTGTGTTCCTATTTTTTATGTGCTTAAATATTAATTTCTACTAATTTTA
* * *
32131 AATATTAACAACTAAATTTTGTCATGATTTTATATTTCTAGTTTCCTCCATTTGTAAACACCATG
66 AATATTAACAACTAAATTTTGGCATGATTTTATATTTCTAGTTTCCTCCATTCGTAAACACCAGG
* * *
32196 ATTCAAACTTCTAACCTTTCTTAAGGGATCTAACGCCTCATCCCACTAGACTAACTGGTTA
131 ATTCAAACTTCT-ACCTTTCTTAA-TGATCTAACACCTCATCCCACTAGACTAACTGATTA
*
32257 TTGGTAAATATACATATTGTGTTCCTATTTTTTATGTGCTTAAATATTAATTTCTACTAATTTTA
1 TTGGTAGATATACATATTGTGTTCCTATTTTTTATGTGCTTAAATATTAATTTCTACTAATTTTA
* *
32322 AATATTAACAATTAAATTTTGACATGATTTTATATTT
66 AATATTAACAACTAAATTTTGGCATGATTTTATATTT
32359 AATTATCTTA
Statistics
Matches: 454, Mismatches: 18, Indels: 15
0.93 0.04 0.03
Matches are distributed among these distances:
181 112 0.25
182 26 0.06
185 1 0.00
186 1 0.00
189 1 0.00
190 2 0.00
191 310 0.68
192 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.44
Consensus pattern (189 bp):
TTGGTAGATATACATATTGTGTTCCTATTTTTTATGTGCTTAAATATTAATTTCTACTAATTTTA
AATATTAACAACTAAATTTTGGCATGATTTTATATTTCTAGTTTCCTCCATTCGTAAACACCAGG
ATTCAAACTTCTACCTTTCTTAATGATCTAACACCTCATCCCACTAGACTAACTGATTA
Found at i:32783 original size:20 final size:20
Alignment explanation
Indices: 32761--32797 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32751 AGCATTTTTA
32761 AAAATTT-TAAAAATTTCTT
1 AAAATTTCTAAAAATTTCTT
*
32780 AAAATTTCTATAAATTTC
1 AAAATTTCTAAAAATTTC
32798 AAAATTAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAATTTCTAAAAATTTCTT
Found at i:35478 original size:23 final size:23
Alignment explanation
Indices: 35452--35529 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
35442 CACCACAGCT
35452 CATATAATTGCACCGAAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
* * *
35475 CATATAATTGCACTGGAGTGCCG
1 CATATAATTGCACCGAAGTGCCA
* * *
35498 TATAGAATTGCACCGTAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
*
35521 TATAATAAT
1 CAT-ATAAT
35530 GTCCATAAGG
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 41 0.91
24 4 0.09
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (23 bp):
CATATAATTGCACCGAAGTGCCA
Found at i:35715 original size:103 final size:103
Alignment explanation
Indices: 35536--35753 Score: 382
Period size: 103 Copynumber: 2.1 Consensus size: 103
35526 TAATGTCCAT
* *
35536 AAGGACCACATATCATACCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATACCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
35601 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
* *
35639 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATACCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
* *
35704 GACTTCACACATGTTCTAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
35742 AAGGACCACATA
1 AAGGACCACATA
35754 GACCCTCGAC
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 109 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATACCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATATCCCG
Found at i:37168 original size:20 final size:20
Alignment explanation
Indices: 37133--37182 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
37123 TGAGGGGTAT
37133 CGATTCCCCATTGAATGAGTAC
1 CGATT-CCC-TTGAATGAGTAC
* *
37155 CGGTTCCCTTGAATGGGTAC
1 CGATTCCCTTGAATGAGTAC
37175 CGATTCCC
1 CGATTCCC
37183 CTTGCCCAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 18 0.72
21 3 0.12
22 4 0.16
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (20 bp):
CGATTCCCTTGAATGAGTAC
Found at i:38117 original size:16 final size:16
Alignment explanation
Indices: 38078--38120 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
38068 AGCATCAGTT
*
38078 CTTATCACTCAAAATC
1 CTTATCAATCAAAATC
* *
38094 ATTAATCAATCAAATTC
1 CTT-ATCAATCAAAATC
38111 CTTATCAATC
1 CTTATCAATC
38121 TTTAATTACC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.35
Consensus pattern (16 bp):
CTTATCAATCAAAATC
Found at i:40786 original size:23 final size:23
Alignment explanation
Indices: 40760--40837 Score: 111
Period size: 23 Copynumber: 3.3 Consensus size: 23
40750 CACCACAGCT
40760 CATATAATTGCACCGAAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
*
40783 CATATAATTGCACCGAAGTGCCG
1 CATATAATTGCACCGAAGTGCCA
* *
40806 CATAGAATTGCACCGTAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
*
40829 TATAATAAT
1 CAT-ATAAT
40838 GTCCATAAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 44 0.92
24 4 0.08
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (23 bp):
CATATAATTGCACCGAAGTGCCA
Found at i:41023 original size:103 final size:103
Alignment explanation
Indices: 40844--41061 Score: 382
Period size: 103 Copynumber: 2.1 Consensus size: 103
40834 TAATGTCCAT
* *
40844 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATATGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATATGTCTCACCA
*
40909 GACTTCACACATGTTCAAAAGAATACATATATGTTCCG
66 GACTTCACACATGTTCAAAAGAATACATATATGTCCCG
* *
40947 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATATGTCTCACCA
*
41012 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCAAAAGAATACATATATGTCCCG
41050 AAGGACCACATA
1 AAGGACCACATA
41062 GACCCTCAAC
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 109 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATATGTCTCACCA
GACTTCACACATGTTCAAAAGAATACATATATGTCCCG
Found at i:42477 original size:20 final size:21
Alignment explanation
Indices: 42436--42491 Score: 87
Period size: 20 Copynumber: 2.7 Consensus size: 21
42426 TTCGCTTGAG
*
42436 GGGTATCGATTCCCAATTGAAT
1 GGGTACCGATTCCC-ATTGAAT
42458 GGGTACCGATTCCC-TTGAAT
1 GGGTACCGATTCCCATTGAAT
42478 GGGTACCGATTCCC
1 GGGTACCGATTCCC
42492 CTTACCCAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
20 20 0.61
22 13 0.39
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (21 bp):
GGGTACCGATTCCCATTGAAT
Found at i:48068 original size:12 final size:12
Alignment explanation
Indices: 48053--48116 Score: 60
Period size: 12 Copynumber: 5.1 Consensus size: 12
48043 AAAAAATTAC
48053 TTAAATAAAATA
1 TTAAATAAAATA
48065 TTAAAATAATTAAATAA
1 TT-AAAT-A--AAAT-A
48082 TTAAAT-AAATA
1 TTAAATAAAATA
*
48093 CT-AATAAAATA
1 TTAAATAAAATA
48104 TTAAATAAAATA
1 TTAAATAAAATA
48116 T
1 T
48117 ACCTTAAGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
10 3 0.07
11 8 0.19
12 16 0.37
13 4 0.09
14 1 0.02
16 8 0.19
17 3 0.07
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (12 bp):
TTAAATAAAATA
Found at i:48167 original size:10 final size:10
Alignment explanation
Indices: 48128--48167 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
48118 CCTTAAGTTA
*
48128 AGAGGATTTA
1 AGAGGATTTG
*
48138 AGAGAATTTG
1 AGAGGATTTG
48148 AGAGGATTTG
1 AGAGGATTTG
48158 AGAGGATTTG
1 AGAGGATTTG
48168 GTGTGATGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.30
Consensus pattern (10 bp):
AGAGGATTTG
Found at i:53462 original size:20 final size:21
Alignment explanation
Indices: 53439--53482 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
53429 CTCTTTTAAT
*
53439 ATTTTATTTTCA-AAATAAAA
1 ATTTTAATTTCATAAATAAAA
*
53459 A-TTTAATTTCATAGATAAAA
1 ATTTTAATTTCATAAATAAAA
53479 ATTT
1 ATTT
53483 ATTAAAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
19 9 0.45
20 9 0.45
21 2 0.10
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTTTAATTTCATAAATAAAA
Found at i:53468 original size:19 final size:20
Alignment explanation
Indices: 53441--53483 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
53431 CTTTTAATAT
*
53441 TTTATTTTCA-AAATAAAAA
1 TTTAATTTCATAAATAAAAA
*
53460 TTTAATTTCATAGATAAAAA
1 TTTAATTTCATAAATAAAAA
53480 TTTA
1 TTTA
53484 TTAAAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (20 bp):
TTTAATTTCATAAATAAAAA
Found at i:59752 original size:15 final size:15
Alignment explanation
Indices: 59732--59761 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
59722 ATATGAGAAA
59732 AAATTAATTTAATTT
1 AAATTAATTTAATTT
59747 AAATTAATTTAATTT
1 AAATTAATTTAATTT
59762 TAAAACATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AAATTAATTTAATTT
Found at i:62919 original size:16 final size:19
Alignment explanation
Indices: 62881--62919 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
62871 TAAAAATCCT
62881 TGAAGGAGTACAAAGGAAA
1 TGAAGGAGTACAAAGGAAA
62900 TGAAGGA-T-CAAAGG-AA
1 TGAAGGAGTACAAAGGAAA
62916 TGAA
1 TGAA
62920 AACTTTGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 6 0.30
18 1 0.05
19 7 0.35
ACGTcount: A:0.51, C:0.05, G:0.31, T:0.13
Consensus pattern (19 bp):
TGAAGGAGTACAAAGGAAA
Found at i:63693 original size:22 final size:24
Alignment explanation
Indices: 63650--63693 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
63640 AATTTAAAAG
* *
63650 ATATTATTTTTTATAAATATAATA
1 ATATTATTTTTGATAAAAATAATA
63674 ATATT-TTTTTGA-AAAAATAA
1 ATATTATTTTTGATAAAAATAA
63694 ATTTCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 6 0.33
24 5 0.28
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
ATATTATTTTTGATAAAAATAATA
Found at i:65869 original size:20 final size:20
Alignment explanation
Indices: 65836--65876 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
65826 ACTGATGTAA
* *
65836 TAAACTTAATATATAATATT
1 TAAACGTAAAATATAATATT
65856 TAAACGTAAAATATAATATT
1 TAAACGTAAAATATAATATT
65876 T
1 T
65877 CCTCCAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (20 bp):
TAAACGTAAAATATAATATT
Found at i:67292 original size:45 final size:45
Alignment explanation
Indices: 67224--67372 Score: 190
Period size: 45 Copynumber: 3.3 Consensus size: 45
67214 ATTTGTAAAC
* * * * * * * *
67224 TGGTGGTGGTGGGGGCGGGGACTTGTATTTATAATGGTGATTGGG
1 TGGTGATGGTGGAGGTGGAGACTTGTACTTGTAAGGGTGCTTGGG
67269 TGGTGATGGTGGAGGTGGAGACTTGTACTTGTAAGGGTGCTTGGG
1 TGGTGATGGTGGAGGTGGAGACTTGTACTTGTAAGGGTGCTTGGG
* *
67314 TGGTGATGGTGGTGGTGGAGACTTGTACTTGTGAGGGTGCTTGGG
1 TGGTGATGGTGGAGGTGGAGACTTGTACTTGTAAGGGTGCTTGGG
* *
67359 TGGTGGTGGAGGAG
1 TGGTGATGGTGGAG
67373 ACTTATACTC
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 91 1.00
ACGTcount: A:0.13, C:0.05, G:0.50, T:0.32
Consensus pattern (45 bp):
TGGTGATGGTGGAGGTGGAGACTTGTACTTGTAAGGGTGCTTGGG
Found at i:67318 original size:39 final size:43
Alignment explanation
Indices: 67268--67387 Score: 149
Period size: 45 Copynumber: 2.8 Consensus size: 43
67258 TGGTGATTGG
*
67268 GTGGTGATGGTGGAGGTGGAGACTTGTACTTGTAAGGGTGCTT
1 GTGGTGATGGTGGTGGTGGAGACTTGTACTTGTAAGGGTGCTT
*
67311 GGGTGGTGATGGTGGTGGTGGAGACTTGTACTTGTGAGGGTGC-T
1 --GTGGTGATGGTGGTGGTGGAGACTTGTACTTGTAAGGGTGCTT
* * *
67355 -TGG-G-TGGTGGTGGAGGAGACTTATACTCGTAAG
1 GTGGTGATGGTGGTGGTGGAGACTTGTACTTGTAAG
67388 ATGGTGAAGG
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
39 25 0.36
40 1 0.01
41 3 0.04
44 1 0.01
45 39 0.57
ACGTcount: A:0.16, C:0.07, G:0.46, T:0.31
Consensus pattern (43 bp):
GTGGTGATGGTGGTGGTGGAGACTTGTACTTGTAAGGGTGCTT
Found at i:69376 original size:30 final size:30
Alignment explanation
Indices: 69341--69410 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 30
69331 GTAGATAACT
*
69341 GTACTAAATTGAGTAAAATGTAAAGTTAAA
1 GTACTAAATTGAGTAAAATCTAAAGTTAAA
69371 GTACTAAATTGAGTAAAATCTAAAGTTAAA
1 GTACTAAATTGAGTAAAATCTAAAGTTAAA
*
69401 GGACTAAATT
1 GTACTAAATT
69411 AAAAAATCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.49, C:0.06, G:0.16, T:0.30
Consensus pattern (30 bp):
GTACTAAATTGAGTAAAATCTAAAGTTAAA
Found at i:69823 original size:26 final size:28
Alignment explanation
Indices: 69781--69832 Score: 65
Period size: 26 Copynumber: 1.9 Consensus size: 28
69771 TTTCAACTAG
69781 ACTCGAACTAGAAAAC-TG-AATTGATA
1 ACTCGAACTAGAAAACTTGAAATTGATA
*
69807 ACTCG-ACTCGAATAACTTGAAATTGA
1 ACTCGAACTAGAA-AACTTGAAATTGA
69833 AAAAACAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 6 0.27
26 8 0.36
27 2 0.09
28 6 0.27
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.25
Consensus pattern (28 bp):
ACTCGAACTAGAAAACTTGAAATTGATA
Found at i:82509 original size:2 final size:2
Alignment explanation
Indices: 82502--82529 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
82492 TTAATTAATA
82502 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82530 TAATGAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84189 original size:12 final size:12
Alignment explanation
Indices: 84172--84206 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
84162 AACCGGAGGC
84172 TCCAACGGCGGG
1 TCCAACGGCGGG
*
84184 TCCAACGACGGG
1 TCCAACGGCGGG
84196 TCCAACGGCGG
1 TCCAACGGCGG
84207 CGCACGGCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.20, C:0.34, G:0.37, T:0.09
Consensus pattern (12 bp):
TCCAACGGCGGG
Found at i:84964 original size:15 final size:15
Alignment explanation
Indices: 84946--84986 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
84936 ATAACAATAT
*
84946 TAATACTAATA-ATCA
1 TAATA-TAATATATAA
84961 TAATATAATATATAA
1 TAATATAATATATAA
84976 TAATATAATAT
1 TAATATAATAT
84987 TTATATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATATAATATATAA
Found at i:85171 original size:48 final size:48
Alignment explanation
Indices: 85115--85229 Score: 221
Period size: 48 Copynumber: 2.4 Consensus size: 48
85105 ATTTATATAT
85115 GTATATAGTTTATAGAAATACTATGCATAAACTATATAAAGTAATAAA
1 GTATATAGTTTATAGAAATACTATGCATAAACTATATAAAGTAATAAA
*
85163 GTATATAGTTTATAGAAATACTATGCATAAATTATATAAAGTAATAAA
1 GTATATAGTTTATAGAAATACTATGCATAAACTATATAAAGTAATAAA
85211 GTATATAGTTTATAGAAAT
1 GTATATAGTTTATAGAAAT
85230 CCTAAACTTT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (48 bp):
GTATATAGTTTATAGAAATACTATGCATAAACTATATAAAGTAATAAA
Found at i:85469 original size:24 final size:26
Alignment explanation
Indices: 85435--85491 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 26
85425 CTTATAGTGC
*
85435 ATATATGTATAA-ACTAT-GTATA-GT
1 ATATATATATAACA-TATAGTATACGT
85459 ATATATATATAACATATAGTATACGT
1 ATATATATATAACATATAGTATACGT
85485 ATATATA
1 ATATATA
85492 CAATCTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 14 0.48
25 6 0.21
26 9 0.31
ACGTcount: A:0.46, C:0.05, G:0.09, T:0.40
Consensus pattern (26 bp):
ATATATATATAACATATAGTATACGT
Found at i:85554 original size:21 final size:20
Alignment explanation
Indices: 85529--85619 Score: 53
Period size: 21 Copynumber: 4.3 Consensus size: 20
85519 TATATGTAAC
85529 TTATAGTTTATAAATAATAGT
1 TTATA-TTTATAAATAATAGT
* *
85550 TTATA-TTAGTGTACTATATAGT
1 TTATATTTA-T-AAATA-ATAGT
*
85572 TTATACTTTATAACCT-ATAGT
1 TTATA-TTTATAA-ATAATAGT
* *
85593 ATATAATTTATAAATTATAG-
1 TTAT-ATTTATAAATAATAGT
85613 TTATATT
1 TTATATT
85620 AATGTAATAT
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
19 6 0.11
20 5 0.09
21 27 0.48
22 12 0.21
23 3 0.05
24 3 0.05
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.49
Consensus pattern (20 bp):
TTATATTTATAAATAATAGT
Found at i:86590 original size:23 final size:23
Alignment explanation
Indices: 86543--86590 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
86533 AATAACATAT
**
86543 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
86566 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
86589 TA
1 TA
86591 TGCATTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:86647 original size:23 final size:23
Alignment explanation
Indices: 86621--86668 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
86611 ATCAAATACA
86621 ATAA-CAAATTAGGTAGCGCTTAT
1 ATAATCAAA-TAGGTAGCGCTTAT
**
86644 ATAATGTAATAGGTAGCGCTTAT
1 ATAATCAAATAGGTAGCGCTTAT
86667 AT
1 AT
86669 TGACCTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAATCAAATAGGTAGCGCTTAT
Found at i:86652 original size:87 final size:86
Alignment explanation
Indices: 86502--86668 Score: 289
Period size: 87 Copynumber: 1.9 Consensus size: 86
86492 CGGTTATGTT
* *
86502 ATATCATTTAACCAGAAATATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATGTAAT
1 ATATCATTTAACCAGAAATATTATCAAACACAATAACAAATTAGGTAGCGCTTATATAATGTAAT
86567 AGGTAGCGCTTATATAATAAA
66 AGGTAGCGCTTATATAATAAA
* *
86588 ATATGCATTTAACCGGAAATATTATCAAATACAATAACAAATTAGGTAGCGCTTATATAATGTAA
1 ATAT-CATTTAACCAGAAATATTATCAAACACAATAACAAATTAGGTAGCGCTTATATAATGTAA
86653 TAGGTAGCGCTTATAT
65 TAGGTAGCGCTTATAT
86669 TGACCTATTT
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
86 4 0.05
87 72 0.95
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.32
Consensus pattern (86 bp):
ATATCATTTAACCAGAAATATTATCAAACACAATAACAAATTAGGTAGCGCTTATATAATGTAAT
AGGTAGCGCTTATATAATAAA
Found at i:87025 original size:197 final size:200
Alignment explanation
Indices: 86702--87141 Score: 504
Period size: 197 Copynumber: 2.2 Consensus size: 200
86692 GTAAATTTAA
** * * * *
86702 ACCGGTTACATTATAAATTGACCTATTACATTAT-GTATATCGGTTTCGATGTTTTCGGGATCGA
1 ACCGGTTACATTGGAAATTTACCTATTACATAATAAT-TATCGATTTCGATGTTTTCGGGATCGA
* * *
86766 TACAATTTTAAATGTATCGACACTTTATGCGTGCAACTCGTTTGTGCTTTATTTTAGAAAAAA-G
65 TACAATTTTAAATGTATCGACACTTTATGCGTACAACTCGTTTGTCCTTCATTTTAGAAAAAATG
* * * * *
86830 TATCGACACATATTTAA-AGAGTATCGATACATAATGTAGACCTATT-TGCTAATTAA-CCGGTA
130 TATCGACACAAATTAAACAAAGTATCGATACATAATGTAGACCTATTCT-CTAATGAACCCGATA
86892 TATTT-T
194 TATTTCT
* * * * *
86898 AACTGGTTACATTGTAAATTTACTTGTTACGTAATAATTATCGATTTCGATG-TTTCGAGGATCG
1 -ACCGGTTACATTGGAAATTTACCTATTACATAATAATTATCGATTTCGATGTTTTCG-GGATCG
* *
86962 ATAC-TTTTTACAAATGTATCGACACTTTATGCGTACACCTCGTTTG-CCATTCATTTT-GAAAA
64 ATACAATTTT--AAATGTATCGACACTTTATGCGTACAACTCGTTTGTCC-TTCATTTTAGAAAA
* * * * *
87024 AATGTATCGACACAAATTAAACAAAGTGTCGATACTTTATGTTGACCTATTCTCTCATGAACCCG
126 AATGTATCGACACAAATTAAACAAAGTATCGATACATAATGTAGACCTATTCTCTAATGAACCCG
87089 ATATATTTCT
191 ATATATTTCT
*
87099 ACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCGA
1 ACCGGTTACATTGGAAATTTACCTATTACATAATAATTATCGA
87142 CACAAAATCT
Statistics
Matches: 203, Mismatches: 30, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
196 9 0.04
197 58 0.29
198 57 0.28
199 30 0.15
200 48 0.24
201 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (200 bp):
ACCGGTTACATTGGAAATTTACCTATTACATAATAATTATCGATTTCGATGTTTTCGGGATCGAT
ACAATTTTAAATGTATCGACACTTTATGCGTACAACTCGTTTGTCCTTCATTTTAGAAAAAATGT
ATCGACACAAATTAAACAAAGTATCGATACATAATGTAGACCTATTCTCTAATGAACCCGATATA
TTTCT
Found at i:87165 original size:200 final size:198
Alignment explanation
Indices: 86759--87168 Score: 422
Period size: 200 Copynumber: 2.1 Consensus size: 198
86749 GATGTTTTCG
* * * *
86759 GGATCGATACAATTTT--AAATGTATCGACACTTTATGCGTGCAACTCGTTTGTGCTTTATTTTA
1 GGATCGATAC-TTTTTACAAATGTATCGACACTTTATGCGTACAACTCGTTTGTCCTTCATTTTA
* * * *
86822 GAAAAAAGTATCGACACATATTTAAAGAGTATCGATACATAATGTAGACCTATTTGCTAATTAAC
65 GAAAAAAGTATCGACACAAATTAAAAAAGTATCGATACATAATGTAGACCTATTTGCTAATGAAC
* * * * * * ** * **
86887 CGGTATATTTTAACTGGTTACATTGTAAATTTACTTGTTACGTAATAATTATCGATTTCGATGTT
130 CGATATATTTTAACCGGTTACATTGGAAATTTACCTATTACATAATAATTATCGATCACAAAATT
**
86952 TCGA
195 AAGA
*
86956 GGATCGATACTTTTTACAAATGTATCGACACTTTATGCGTACACCTCGTTTG-CCATTCATTTT-
1 GGATCGATACTTTTTACAAATGTATCGACACTTTATGCGTACAACTCGTTTGTCC-TTCATTTTA
* * * * *
87019 GAAAAAATGTATCGACACAAATTAAACAAAGTGTCGATACTTTATGTTGACCTATTCT-CTCATG
65 GAAAAAA-GTATCGACACAAATTAAA-AAAGTATCGATACATAATGTAGACCTATT-TGCTAATG
*
87083 AACCCGATATATTTCT-ACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCGA-CACA
127 AA-CCGATATATTT-TAACCGGTTACATTGGAAATTTACCTATTACATAATAATTATCGATCACA
*
87146 AAATCTAATA
190 AAAT-TAAGA
87156 GTG-TCGATACTTT
1 G-GATCGATACTTT
87169 ATGTTAACCT
Statistics
Matches: 174, Mismatches: 29, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
196 4 0.02
197 18 0.10
198 56 0.32
199 33 0.19
200 61 0.35
201 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (198 bp):
GGATCGATACTTTTTACAAATGTATCGACACTTTATGCGTACAACTCGTTTGTCCTTCATTTTAG
AAAAAAGTATCGACACAAATTAAAAAAGTATCGATACATAATGTAGACCTATTTGCTAATGAACC
GATATATTTTAACCGGTTACATTGGAAATTTACCTATTACATAATAATTATCGATCACAAAATTA
AGA
Found at i:87224 original size:106 final size:107
Alignment explanation
Indices: 87048--87244 Score: 270
Period size: 106 Copynumber: 1.9 Consensus size: 107
87038 AATTAAACAA
* * * * *
87048 AGTGTCGATACTTTATGTTGACCTATTCTCTCATGAACCCGATATATTTCTACCGGTTACATTGG
1 AGTGTCGATACTTTATGTTAACCTATTCTATAATGAACACGATATATGTCTACCGGTTACATTGG
87113 AAATTTACCTATTACATTATAATTATCGACACAAAATCTAAT
66 AAATTTACCTATTACATTATAATTATCGACACAAAATCTAAT
* * * * * * *
87155 AGTGTCGATACTTTATGTTAACCTGTTTTATAATTAA-ACGGTATATGTGTACTGGTTACATTGT
1 AGTGTCGATACTTTATGTTAACCTATTCTATAATGAACACGATATATGTCTACCGGTTACATTGG
*
87219 CAATTTACCTATTACATTATAATTAT
66 AAATTTACCTATTACATTATAATTAT
87245 TTGTCATTAA
Statistics
Matches: 77, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
106 46 0.60
107 31 0.40
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (107 bp):
AGTGTCGATACTTTATGTTAACCTATTCTATAATGAACACGATATATGTCTACCGGTTACATTGG
AAATTTACCTATTACATTATAATTATCGACACAAAATCTAAT
Found at i:90993 original size:201 final size:200
Alignment explanation
Indices: 90634--91712 Score: 1571
Period size: 201 Copynumber: 5.4 Consensus size: 200
90624 TGTTTTTAGG
* *
90634 ATCGACACTTTG-TAGTGCACTTGGTTTGGAAATACATTCTGGACAATATGTATCGACACAAATG
1 ATCGACACTTTGTTCGTGCACTTGGTTTGGAAATACATTCTGGACAACATGTATCGACACAAATG
* *
90698 AATAAAGTG-CTGACACATATTGTAGACCTATTTTCTCATAAAACCAGTAAATTTAAATCGGTTA
66 AATAAAGTGTC-GATACATATTGTAGACCTATTTTCTCATAAAACCGGTAAATTTAAA-CGGTTA
*
90762 CATTGTAAAGTGACCTATTACATTATAGTTACGGGTCTCGATGTTTTTAGGATCGATACTTTTTA
129 CATTGTAAAGTGACCTATTACATTATAGTTACGGGTCTCGATGTTTTTGGGATCGATACTTTTTA
90827 TAAATGT
194 TAAATGT
90834 ATCGACACTTTGTTCGTGCACTTGGTTTGGAAATACATTCTGGACAACATGTATCGACACAAATG
1 ATCGACACTTTGTTCGTGCACTTGGTTTGGAAATACATTCTGGACAACATGTATCGACACAAATG
* *
90899 AATAAGGTGTCGACACATATTGTAGACCTATTTTCTCATAAAACCGGTAAATTTAAATCGGTTAC
66 AATAAAGTGTCGATACATATTGTAGACCTATTTTCTCATAAAACCGGTAAATTTAAA-CGGTTAC
*
90964 ATTGTAAAGTGACCTATTACATTATAGTTACGGGTCTCGATGTTTTTGGGATCGATATTTTTTAT
130 ATTGTAAAGTGACCTATTACATTATAGTTACGGGTCTCGATGTTTTTGGGATCGATACTTTTTAT
91029 AAATGT
195 AAATGT
91035 ATCGACACTTTGTTCGTGCACTTGGTTTGGAAATACATTCTGGACAACATGTATCGACACAAATG
1 ATCGACACTTTGTTCGTGCACTTGGTTTGGAAATACATTCTGGACAACATGTATCGACACAAATG
*
91100 AATAAAGTGTCGATACATATTGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTAC
66 AATAAAGTGTCGATACATATTGTAGACCTATTTTCTCATAAAACCGGTAAATTTAAA-CGGTTAC
* * * *
91165 ATTGTAAAGTGACCTATTACATTATAGTTACGGGTTTTGATGTTTTTGGGATCGACACTTGTTAT
130 ATTGTAAAGTGACCTATTACATTATAGTTACGGGTCTCGATGTTTTTGGGATCGATACTTTTTAT
91230 AAATGT
195 AAATGT
* *
91236 ATCGACACTTTTTTCGTGCACTTGGTTTGGAAATACATTCTAGACAACATGTATCGACACAAATG
1 ATCGACACTTTGTTCGTGCACTTGGTTTGGAAATACATTCTGGACAACATGTATCGACACAAATG
* *
91301 AATAAAGTGTCGATACATATTGTAGACCTATTTTCTCATAAAATCGGTAAATTTAAACTAGTTAC
66 AATAAAGTGTCGATACATATTGTAGACCTATTTTCTCATAAAACCGGTAAATTTAAAC-GGTTAC
* * **
91366 ATTGTAAAGTGACCTATTACATTATAGTTACGGGTTTCGATGTTTTTGGGATCGACACTTGATAT
130 ATTGTAAAGTGACCTATTACATTATAGTTACGGGTCTCGATGTTTTTGGGATCGATACTTTTTAT
91431 AAATGT
195 AAATGT
* * * * * *
91437 GTCGACACTTAT-TT-GTGAACTTGTTTTGGTTGGAAAACACATTATGGAC-ACAAAGTATC-AG
1 ATCGACACTT-TGTTCGTGCACTTG----GTTTGG-AAATACATTCTGGACAAC-ATGTATCGA-
* ** * * * * *
91498 TACAAATTTATAAAGTGTCGATAC-TTTATGTATACCTCTTTTCTCAT-AAACCGGTATATTTAG
58 CACAAATGAATAAAGTGTCGATACATAT-TGTAGACCTATTTTCTCATAAAACCGGTAAATTTAA
* ** * * * *
91561 ACTGGTTACATTGTTATTTTATCTATTACATTATAATTATGGGTCTCGATGTTTTTGGGATCGAT
122 AC-GGTTACATTGTAAAGTGACCTATTACATTATAGTTACGGGTCTCGATGTTTTTGGGATCGAT
91626 ACTTTTTATAAATGT
186 ACTTTTTATAAATGT
* *
91641 ATCGACACTTTGTTCGTGCACTTGGTTTGGAAATACTTTCTGGACAACATGTATCGACACGAATG
1 ATCGACACTTTGTTCGTGCACTTGGTTTGGAAATACATTCTGGACAACATGTATCGACACAAATG
91706 AATAAAG
66 AATAAAG
91713 CAAATTCATT
Statistics
Matches: 802, Mismatches: 61, Indels: 32
0.90 0.07 0.04
Matches are distributed among these distances:
200 50 0.06
201 583 0.73
202 2 0.00
203 1 0.00
204 102 0.13
205 64 0.08
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.37
Consensus pattern (200 bp):
ATCGACACTTTGTTCGTGCACTTGGTTTGGAAATACATTCTGGACAACATGTATCGACACAAATG
AATAAAGTGTCGATACATATTGTAGACCTATTTTCTCATAAAACCGGTAAATTTAAACGGTTACA
TTGTAAAGTGACCTATTACATTATAGTTACGGGTCTCGATGTTTTTGGGATCGATACTTTTTATA
AATGT
Found at i:92987 original size:24 final size:24
Alignment explanation
Indices: 92936--92987 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
92926 ATTTACATTT
* *
92936 AAATTCAAACTCAAATTGAAATTT
1 AAATTCAAACTCAAATTGAAAATG
*
92960 AAATTCAAACTCTAATT-ATAAATG
1 AAATTCAAACTCAAATTGA-AAATG
92984 AAAT
1 AAAT
92988 GAAAATGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATTCAAACTCAAATTGAAAATG
Found at i:94304 original size:3 final size:3
Alignment explanation
Indices: 94296--94345 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
94286 ATTTGTTTGA
* * * *
94296 ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC TTC ATC GTC ATC TTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
94344 AT
1 AT
94346 TGACCGCTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.28, C:0.30, G:0.02, T:0.40
Consensus pattern (3 bp):
ATC
Found at i:95492 original size:15 final size:15
Alignment explanation
Indices: 95472--95522 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
95462 TGATATCCTC
*
95472 AGAAGAGGTGGGTTG
1 AGAAGAGCTGGGTTG
*
95487 AGAAGAGTTGGGTTG
1 AGAAGAGCTGGGTTG
*
95502 AGAAGAACTGGGTTG
1 AGAAGAGCTGGGTTG
95517 AGAAGA
1 AGAAGA
95523 TCCCCGATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.33, C:0.02, G:0.45, T:0.20
Consensus pattern (15 bp):
AGAAGAGCTGGGTTG
Found at i:96731 original size:203 final size:200
Alignment explanation
Indices: 95941--96878 Score: 1468
Period size: 198 Copynumber: 4.7 Consensus size: 200
95931 AATTTCATTG
*
95941 TTTTAGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
1 TTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
* * *
96006 CTGGACAC--AG-T-ATCGACAAAAATTAAAAAAGTGTTGATACTTCATGTACACTTGTTTTCTC
66 CTGGACACAAAGATGATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTTTTCTC
96067 ATAAACCGGTGTATTTAGACCAGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTC
131 ATAAACCGGTGTATTTAGACCAGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTC
96132 GATGT
196 GATGT
96137 TTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
1 TTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
* * *
96202 CTGGACACAAAG--CATCGACATAAATTAAAAAAGTGTCGATACTTCATGTACATATGTTTTCTC
66 CTGGACACAAAGATGATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTTTTCTC
*
96265 ATAAACCGATGTATTTAGACCAGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTC
131 ATAAACCGGTGTATTTAGACCAGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTC
96330 GATGT
196 GATGT
96335 TTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
1 TTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
* *
96400 CTGGACACAAAG-T-ATCGACACAAATTAAAAAAGTGTTGATACTTCATGTACACCTGTTTTCTC
66 CTGGACACAAAGATGATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTTTTCTC
* * *
96463 ATAAACCAGTGTATTTAGACCGGTTAGATTGATAATTTACCTATAACATTATAATTATGGGTCTC
131 ATAAACCGGTGTATTTAGACCAGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTC
96528 GATGT
196 GATGT
* **
96533 TTTTGAGATCGATACTTTTTATAAATGTATCGACACATT-TCCATG-CACTTGGTAAGGAAATCA
1 TTTTGGGATCGATACTTTTTATAAATGTATCGACACATTAT-GGTGAC-CTTGGTAAGGAAATCA
* * *
96596 TTCTGGACACAAAGTATGGGATCGACACAAATTAAACAAGTGTCGATACTTTATGTAGACATGTT
64 TTCTGGACACAAAG-AT--GATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTT
*
96661 TTCTCATAAACCGGTGTATTTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGG
126 TTCTCATAAACCGGTGTATTTAGACCAGTTAGATTGATAATTTACCTATTACATTATAATTATGG
96726 GTCTCGATGT
191 GTCTCGATGT
**
96736 TTTTGGGATCGATACTTTTTATAAATGTATCGACACATT-TCCATG-CACTTGGTAAGGAAATCA
1 TTTTGGGATCGATACTTTTTATAAATGTATCGACACATTAT-GGTGAC-CTTGGTAAGGAAATCA
* * * *
96799 TTCTGGACACAAAGTATGGGATCGACACAAATTAAACAAGTGTCGATACTTTATGTACACCTTTT
64 TTCTGGACACAAAG-AT--GATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTT
96864 TTCTCATAAACCGGT
126 TTCTCATAAACCGGT
96879 ATACTTGGAC
Statistics
Matches: 703, Mismatches: 28, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
196 72 0.10
197 2 0.00
198 376 0.53
200 1 0.00
203 252 0.36
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (200 bp):
TTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
CTGGACACAAAGATGATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTTTTCTC
ATAAACCGGTGTATTTAGACCAGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTC
GATGT
Found at i:97180 original size:19 final size:19
Alignment explanation
Indices: 97156--97205 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
97146 TTACATTCAC
*
97156 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
*
97175 ATACAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
97194 ATACAAAATTAA
1 ATACAAAATTAA
97206 CCCTACATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.30
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:98377 original size:17 final size:17
Alignment explanation
Indices: 98355--98390 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
98345 GAATCATTAG
98355 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
98372 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
98389 GA
1 GA
98391 AATATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (17 bp):
GATTAATATCTTTTCAT
Found at i:99394 original size:22 final size:24
Alignment explanation
Indices: 99366--99421 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
99356 AACCTGCATT
99366 TATAATAAAAT-TA-ATCATTTTA
1 TATAATAAAATATACATCATTTTA
*
99388 TATAAT-AACTATACCATCATTTTA
1 TATAATAAAATATA-CATCATTTTA
*
99412 TATAAAAAAA
1 TATAATAAAA
99422 CAAAAATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 3 0.11
22 8 0.30
24 14 0.52
25 2 0.07
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (24 bp):
TATAATAAAATATACATCATTTTA
Found at i:101349 original size:20 final size:20
Alignment explanation
Indices: 101303--101349 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
101293 ATCGGTAGCG
101303 CTTTACCGGTTTTGTCATTT
1 CTTTACCGGTTTTGTCATTT
** *
101323 CGATACCGTTTTTGTCATATT
1 CTTTACCGGTTTTGTCAT-TT
101344 -TTTACC
1 CTTTACC
101350 TATTATATTG
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.15, C:0.21, G:0.13, T:0.51
Consensus pattern (20 bp):
CTTTACCGGTTTTGTCATTT
Found at i:102122 original size:182 final size:181
Alignment explanation
Indices: 101276--102106 Score: 1191
Period size: 182 Copynumber: 4.6 Consensus size: 181
101266 TATTAAAGTG
* ** * * *
101276 TCGACACTTTCAACATAAT-CGGTAGCGCTTTACCGGTTTTGTCATTTCGATAC-CGTTTTTGTC
1 TCGACACTTTCAATAT-ATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACATG-TTTTGTC
* * * * *
101339 ATATTTTTACCTATTATATTGTTATGGATCGATACATTTTCATAAAGTATCGATATTTTTTAGGC
64 ATATTATTACCTGTTATATTGCTATGGATCGATACATTTT-ATAAAGTATCGACACTTTTTAGGC
* *
101404 GTTATAATTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTA
128 GTTATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTA
* * * *
101458 TCGACACTTTCAATATATCCGGTAACTTTTTACCAGTTTTATCATTTCGATACCTGTTTTGTCAT
1 TCGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACATGTTTTGTCAT
* * * * *
101523 ATTATTACCGGATATATTGCTATGAATCGATATATTTTTATAAAGTATCGACATTTTTTAGGCGT
66 ATTATTACCTGTTATATTGCTATGGATCGATACA-TTTTATAAAGTATCGACACTTTTTAGGCGT
**
101588 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTTAATACTTATATTAATTTA
130 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTA
* *
101640 TCGACACTTTCAATATATTCGGTAGCTTTTTACCGGCTTTATCATTTCGAGACATGTTTTGTCAT
1 TCGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACATGTTTTGTCAT
* * * *
101705 ATTATTACCGGATATATTGCTATTGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGC
66 ATTATTACCTGTTATATTGCTATGGATCGATACATTT-TATAAAGTATCGACACTTTTTAGGCGT
*
101770 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATAGTTATATTAATTTA
130 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTA
* *
101822 TCGACACTTTCAATATATCTGGTAGCTTTTTATCGGTTTTATCATTTCGAGACATGTTTTGTCAT
1 TCGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACATGTTTTGTCAT
*
101887 ATTATTACCTGTTATATTGCTATGGATCGACACATTTGTATAAAGTATCGACACTTTTTAGGCGT
66 ATTATTACCTGTTATATTGCTATGGATCGATACATTT-TATAAAGTATCGACACTTTTTAGGCGT
101952 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTA
130 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTA
** * * * * *
102004 TCGACACTTTCAATATATCCGGTAGCGCTTTACCGGTTTTATCATAAT-GACATAGGTTTTATCA
1 TCGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCAT-TTCGAGACATGTTTTGTCA
* *
102068 TATTTTTACCTGTTATATTGCTATAGATCGATACATTTT
65 TATTATTACCTGTTATATTGCTATGGATCGATACATTTT
102107 TAATTTGTAT
Statistics
Matches: 589, Mismatches: 55, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
181 6 0.01
182 577 0.98
183 6 0.01
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.44
Consensus pattern (181 bp):
TCGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACATGTTTTGTCAT
ATTATTACCTGTTATATTGCTATGGATCGATACATTTTATAAAGTATCGACACTTTTTAGGCGTT
ATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTA
Found at i:102546 original size:11 final size:11
Alignment explanation
Indices: 102527--102565 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
102517 CAATTAATTC
*
102527 AAATGTTATTT
1 AAATTTTATTT
102538 AAATTTTATTT
1 AAATTTTATTT
*
102549 CAAATATTATTT
1 -AAATTTTATTT
102561 AAATT
1 AAATT
102566 ATTTTTATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (11 bp):
AAATTTTATTT
Found at i:102572 original size:11 final size:12
Alignment explanation
Indices: 102532--102572 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 12
102522 AATTCAAATG
102532 TTATTTAAATT-
1 TTATTTAAATTA
102543 TTATTTCAAA-TA
1 TTATTT-AAATTA
102555 TTATTTAAATTA
1 TTATTTAAATTA
102567 TT-TTTA
1 TTATTTA
102573 TTAATTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 14 0.52
12 13 0.48
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATTTAAATTA
Found at i:102836 original size:23 final size:24
Alignment explanation
Indices: 102809--102862 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 24
102799 TTATTTTTTC
102809 TTTACATAAATTAAACTATA-TAA
1 TTTACATAAATTAAACTATATTAA
102832 TTTACATAAATTAAACTATATTAA
1 TTTACATAAATTAAACTATATTAA
102856 TTTACAT
1 TTTACAT
102863 TTAATCATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 20 0.67
24 10 0.33
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (24 bp):
TTTACATAAATTAAACTATATTAA
Found at i:105616 original size:2 final size:2
Alignment explanation
Indices: 105609--105648 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
105599 TCACTTCAGA
105609 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105649 GTGTGTGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106442 original size:21 final size:21
Alignment explanation
Indices: 106413--106465 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
106403 ATTCTGACTA
106413 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* *
106434 TCGCGTTGCGATTTTCCGAAT
1 TCGCATTGCGATTTTCCAAAT
*
106455 TCGCAATGCGA
1 TCGCATTGCGA
106466 ATATGTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:106480 original size:20 final size:20
Alignment explanation
Indices: 106455--106542 Score: 158
Period size: 20 Copynumber: 4.4 Consensus size: 20
106445 TTTTCCGAAT
106455 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATATGTAAA
106475 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATATGTAAA
* *
106495 TCGCAACGCGAATAAGTAAA
1 TCGCAATGCGAATATGTAAA
106515 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATATGTAAA
106535 TCGCAATG
1 TCGCAATG
106543 TAAATCTGAC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGAATATGTAAA
Found at i:106557 original size:20 final size:19
Alignment explanation
Indices: 106534--106600 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
106524 GAATATGTAA
*
106534 ATCGCAATGTAAATCTGACT
1 ATCGCAACG-AAATCTGACT
*
106554 ATCGCAACGAGATTCTGACT
1 ATCGCAACGA-AATCTGACT
**
106574 ATCGCAACGCGATGCTGACT
1 ATCGCAACGAAAT-CTGACT
106594 ATCGCAA
1 ATCGCAA
106601 TGCGATTTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 2 0.05
20 38 0.95
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (19 bp):
ATCGCAACGAAATCTGACT
Found at i:106605 original size:20 final size:20
Alignment explanation
Indices: 106548--106606 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
106538 CAATGTAAAT
* *
106548 CTGACTATCGCAACGAGATT
1 CTGACTATCGCAACGCGATG
106568 CTGACTATCGCAACGCGATG
1 CTGACTATCGCAACGCGATG
*
106588 CTGACTATCGCAATGCGAT
1 CTGACTATCGCAACGCGAT
106607 TTTCAAAGCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (20 bp):
CTGACTATCGCAACGCGATG
Found at i:107232 original size:19 final size:19
Alignment explanation
Indices: 107204--107254 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
107194 AACGACAGAA
*
107204 TCGCAATGCGATTTT-AGTT
1 TCGCATTGCGATTTTCA-TT
107223 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
107242 TCGCATTGCGATT
1 TCGCATTGCGATT
107255 CTCGCGTTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 29 0.97
20 1 0.03
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.43
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:107281 original size:20 final size:20
Alignment explanation
Indices: 107256--107307 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
107246 ATTGCGATTC
107256 TCGCGTTGCGATAGTCAAAT
1 TCGCGTTGCGATAGTCAAAT
**
107276 TCGCGTTGCGATAGTCATTT
1 TCGCGTTGCGATAGTCAAAT
*
107296 TCGTGTTGCGAT
1 TCGCGTTGCGAT
107308 TTTCATTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.37
Consensus pattern (20 bp):
TCGCGTTGCGATAGTCAAAT
Found at i:107313 original size:20 final size:20
Alignment explanation
Indices: 107275--107330 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
107265 GATAGTCAAA
* **
107275 TTCGCGTTGCGATAGTCATT
1 TTCGTGTTGCGATTTTCATT
107295 TTCGTGTTGCGATTTTCATT
1 TTCGTGTTGCGATTTTCATT
107315 TTCGTGTTGCGATTTT
1 TTCGTGTTGCGATTTT
107331 AAGTTTCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.11, C:0.16, G:0.23, T:0.50
Consensus pattern (20 bp):
TTCGTGTTGCGATTTTCATT
Found at i:107337 original size:20 final size:20
Alignment explanation
Indices: 107294--107337 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
107284 CGATAGTCAT
* *
107294 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTTAAG
107314 TTTCGTGTTGCGATTTTAAG
1 TTTCGTGTTGCGATTTTAAG
107334 TTTC
1 TTTC
107338 AAAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.55
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTTAAG
Found at i:109289 original size:34 final size:34
Alignment explanation
Indices: 109244--109338 Score: 122
Period size: 33 Copynumber: 2.8 Consensus size: 34
109234 TAGTTTACTT
109244 TCGCAACGCGAAAATGACTATCGCAACGA-AAGAA
1 TCGCAACGCGAAAATGACTATCGCAACGACAA-AA
* ** *
109278 TCGCAATGCG-AAATGAAAATCACAACGACAAAA
1 TCGCAACGCGAAAATGACTATCGCAACGACAAAA
*
109311 TTGCAACGCGAAAATGACTATCGCAACG
1 TCGCAACGCGAAAATGACTATCGCAACG
109339 CGAATTTGAC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
33 25 0.50
34 25 0.50
ACGTcount: A:0.44, C:0.23, G:0.19, T:0.14
Consensus pattern (34 bp):
TCGCAACGCGAAAATGACTATCGCAACGACAAAA
Found at i:109334 original size:53 final size:53
Alignment explanation
Indices: 109276--109394 Score: 125
Period size: 53 Copynumber: 2.2 Consensus size: 53
109266 GCAACGAAAG
* *
109276 AATCGCAATGCGAA-ATGAAAATCACAACGACAA-AATTGCAACGCGAAAATGAC
1 AATCGCAATGCGAATATGAAAATCACAACGA-AAGAATCGCAACGCG-AAATGAA
* * * ** *
109329 TATCGCAACGCGAATTTGACTATCACAACGAAAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAATATGAAAATCACAACGAAAGAATCGCAACGCGAAATGAA
*
109382 AATCGCATTGCGA
1 AATCGCAATGCGA
109395 TTTTCTCGTT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
53 30 0.57
54 23 0.43
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.17
Consensus pattern (53 bp):
AATCGCAATGCGAATATGAAAATCACAACGAAAGAATCGCAACGCGAAATGAA
Found at i:109338 original size:20 final size:20
Alignment explanation
Indices: 109313--109358 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
109303 CGACAAAATT
109313 GCAACGCGAAAATGACTATC
1 GCAACGCGAAAATGACTATC
**
109333 GCAACGCGAATTTGACTATC
1 GCAACGCGAAAATGACTATC
*
109353 ACAACG
1 GCAACG
109359 AAAGAATCGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (20 bp):
GCAACGCGAAAATGACTATC
Found at i:109455 original size:20 final size:20
Alignment explanation
Indices: 109394--109456 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
109384 TCGCATTGCG
*
109394 ATTTTCTCGTTGCGATAGTC
1 ATTTTCACGTTGCGATAGTC
** *
109414 AAATTCACATTGCGATAGTC
1 ATTTTCACGTTGCGATAGTC
109434 ATTTTCACGTTGCGATAGTC
1 ATTTTCACGTTGCGATAGTC
109454 ATT
1 ATT
109457 CGTGTTGCGA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (20 bp):
ATTTTCACGTTGCGATAGTC
Found at i:110506 original size:21 final size:21
Alignment explanation
Indices: 110480--110561 Score: 101
Period size: 21 Copynumber: 3.6 Consensus size: 21
110470 TTTCAATAAG
110480 GGTACCGATACCCTATGGGGA
1 GGTACCGATACCCTATGGGGA
110501 GGTACCGATACCCTATGGGGAGGTA
1 GGTACCGATACCCTAT--GG-GG-A
*
110526 TCGGTACCGATACCCTATGAGGA
1 --GGTACCGATACCCTATGGGGA
110549 GGTACCGATACCC
1 GGTACCGATACCC
110562 CCCTAAGAGA
Statistics
Matches: 54, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
21 29 0.54
23 3 0.06
24 4 0.07
25 2 0.04
27 16 0.30
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (21 bp):
GGTACCGATACCCTATGGGGA
Found at i:111293 original size:31 final size:31
Alignment explanation
Indices: 111255--111410 Score: 278
Period size: 31 Copynumber: 5.0 Consensus size: 31
111245 AGGGTCGAGG
111255 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
111286 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
111317 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
111348 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
111379 GTTTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
111410 G
1 G
111411 GTCATTCGGG
Statistics
Matches: 122, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
31 121 0.99
32 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:112682 original size:18 final size:20
Alignment explanation
Indices: 112644--112685 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
112634 CTCACCTGTC
112644 ATCGTTCAAGAGGCCTCCCCT
1 ATCGTTCAAGAGG-CTCCCCT
112665 ATCGTTCAAGA-G-TCCCCT
1 ATCGTTCAAGAGGCTCCCCT
112683 ATC
1 ATC
112686 ATCCCTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
20 1 0.05
21 11 0.52
ACGTcount: A:0.21, C:0.36, G:0.17, T:0.26
Consensus pattern (20 bp):
ATCGTTCAAGAGGCTCCCCT
Found at i:112713 original size:42 final size:42
Alignment explanation
Indices: 112667--112760 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
112657 CCTCCCCTAT
* *
112667 CGTTCAAGAGTCCCCTATCATCCCTCAAGA-GTCCCCTCCCAC
1 CGTTCAAGAGGCCACTATCATCCCTCAAGAGGT-CCCTCCCAC
* ** *
112709 CGTTCAAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCAC
1 CGTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCAC
*
112751 CATTCAAGAG
1 CGTTCAAGAG
112761 CCCGCTTCAC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 42 0.95
43 2 0.05
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.21
Consensus pattern (42 bp):
CGTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCAC
Found at i:112715 original size:21 final size:21
Alignment explanation
Indices: 112667--112760 Score: 66
Period size: 21 Copynumber: 4.5 Consensus size: 21
112657 CCTCCCCTAT
**
112667 CGTTCAAGAGTCCCCTATCATC
1 CGTTCAAGAGTCCCCTCCCA-C
*
112689 C-CTCAAGAGTCCCCTCCCAC
1 CGTTCAAGAGTCCCCTCCCAC
* * ** *
112709 CGTTCAAGAGGCCACTGTCAT
1 CGTTCAAGAGTCCCCTCCCAC
*
112730 CGTTGAAGAGGT-CCCTCCCAC
1 CGTTCAAGA-GTCCCCTCCCAC
*
112751 CATTCAAGAG
1 CGTTCAAGAG
112761 CCCGCTTCAC
Statistics
Matches: 53, Mismatches: 17, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
20 3 0.06
21 48 0.91
22 2 0.04
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.21
Consensus pattern (21 bp):
CGTTCAAGAGTCCCCTCCCAC
Found at i:114151 original size:14 final size:14
Alignment explanation
Indices: 114132--114167 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
114122 ATTGTTTAAT
114132 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
114146 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
114160 TGATTTGT
1 TGATTTGT
114168 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:114323 original size:33 final size:33
Alignment explanation
Indices: 114284--114367 Score: 123
Period size: 33 Copynumber: 2.5 Consensus size: 33
114274 TCGCAACGCG
** **
114284 GAAATGACTATCGCAACGAGAGAATCGCAATGT
1 GAAATGAAAATCGCAACGAGAGAATCGCAATAC
114317 GAAATGAAAATCGCAACGAGAGAATCGCAATAC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATAC
*
114350 GAAATGAAAATCGTAACG
1 GAAATGAAAATCGCAACG
114368 CGAAACTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.15
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAATAC
Found at i:114443 original size:20 final size:20
Alignment explanation
Indices: 114418--114464 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
114408 GATTCTCTCA
114418 TTGCGATAGTCAT-TTCCGCG
1 TTGCGATAGTCATATT-CGCG
114438 TTGCGATAGTCATATTCGCG
1 TTGCGATAGTCATATTCGCG
114458 TTGCGAT
1 TTGCGAT
114465 TTCTGCGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCATATTCGCG
Found at i:114443 original size:54 final size:54
Alignment explanation
Indices: 114381--114483 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
114371 AACTAAATTT
** *
114381 GCGTTGCGATTTTCATTTTCGCATTGCGATTCTCT-CATTGCGATAGTCATTTCC
1 GCGTTGCGATAGTCATATTCGCATTGCGATT-TCTGCATTGCGATAGTCATTTCC
* * *
114435 GCGTTGCGATAGTCATATTCGCGTTGCGATTTCTGCGTTGTGATAGTCA
1 GCGTTGCGATAGTCATATTCGCATTGCGATTTCTGCATTGCGATAGTCA
114484 AATGAATGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 3 0.07
54 39 0.93
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (54 bp):
GCGTTGCGATAGTCATATTCGCATTGCGATTTCTGCATTGCGATAGTCATTTCC
Found at i:117834 original size:20 final size:20
Alignment explanation
Indices: 117817--117875 Score: 100
Period size: 20 Copynumber: 2.9 Consensus size: 20
117807 TATTGCGAAT
117817 TCAGAAATCGCGTTGCGATAG
1 TCAG-AATCGCGTTGCGATAG
*
117838 TCAGCATCGCGTTGCGATAG
1 TCAGAATCGCGTTGCGATAG
117858 TCAGAATCGCGTTGCGAT
1 TCAGAATCGCGTTGCGAT
117876 TACATATTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 32 0.89
21 4 0.11
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (20 bp):
TCAGAATCGCGTTGCGATAG
Found at i:117903 original size:20 final size:20
Alignment explanation
Indices: 117864--117933 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
117854 ATAGTCAGAA
*
117864 TCGCGTTGCGA-TTACATAT
1 TCGCATTGCGATTTACATAT
*
117883 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACATAT
117903 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
117923 TCGCATTGCGA
1 TCGCATTGCGA
117934 ATTCGGAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
19 10 0.21
20 37 0.79
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.37
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:117954 original size:21 final size:21
Alignment explanation
Indices: 117930--117975 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
117920 TATTCGCATT
117930 GCGAATTCGGAAAATCGCAAC
1 GCGAATTCGGAAAATCGCAAC
*
117951 GCGAATTCGGAAAATCGCAAT
1 GCGAATTCGGAAAATCGCAAC
117972 GCGA
1 GCGA
117976 TAGTTAGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (21 bp):
GCGAATTCGGAAAATCGCAAC
Found at i:118570 original size:20 final size:21
Alignment explanation
Indices: 118545--118596 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
118535 TTTTCCCAAT
*
118545 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
118565 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
118586 TCGCAATGCGA
1 TCGCAATGCGA
118597 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:118610 original size:20 final size:20
Alignment explanation
Indices: 118585--118719 Score: 112
Period size: 20 Copynumber: 6.7 Consensus size: 20
118575 AATTGGGAAA
118585 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
118605 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
118625 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
118646 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * * *
118666 TTCGCAACGTGATTCTGACT
1 ATCGCAATGCGATACTGACT
* * *
118686 TTCGCAACGCGATAAT-ACAT
1 ATCGCAATGCGATACTGAC-T
118706 AATCGCAATGCGAT
1 -ATCGCAATGCGAT
118720 TTTCAAAGCG
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
19 4 0.04
20 65 0.68
21 24 0.25
22 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:118629 original size:61 final size:61
Alignment explanation
Indices: 118582--118713 Score: 174
Period size: 61 Copynumber: 2.2 Consensus size: 61
118572 GCGAATTGGG
* * * * *
118582 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * * *
118643 AAAATCGCAACGAGATACTGACTTTCGCAACGTGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
*
118704 ATAATCGCAA
1 AAAATCGCAA
118714 TGCGATTTTC
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:118915 original size:22 final size:22
Alignment explanation
Indices: 118887--118930 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
118877 CACTCTCTCA
118887 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
118909 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
118931 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:119234 original size:20 final size:20
Alignment explanation
Indices: 119190--119249 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
119180 GCGATTCTCT
**
119190 CGTTGCGATAGTCAAATTCA
1 CGTTGCGATAGTCATTTTCA
*
119210 CGTTGCGATAGTCATTTTCT
1 CGTTGCGATAGTCATTTTCA
* **
119230 TGTTGCGATTTTCATTTTCA
1 CGTTGCGATAGTCATTTTCA
119250 GAAACTATTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.43
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCA
Found at i:119437 original size:25 final size:24
Alignment explanation
Indices: 119383--119437 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
119373 TGTTTATTAT
* *
119383 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
119407 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
119433 TGTTT
1 TGTTT
119438 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:120587 original size:18 final size:18
Alignment explanation
Indices: 120566--120610 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
120556 TCCACTTCGG
*
120566 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
120584 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
120602 GAGCCATCA
1 GAGCCATCA
120611 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:121146 original size:19 final size:20
Alignment explanation
Indices: 121092--121158 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
121082 TAGTTTACTT
* *
121092 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
121112 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
121132 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
121151 TCGCAACG
1 TCGCAACG
121159 ACAATATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:121189 original size:32 final size:33
Alignment explanation
Indices: 121130--121194 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
121120 CGGAAATGGC
121130 TATCGCAATGCGAAATGAAAATCGCAACGACAA
1 TATCGCAATGCGAAATGAAAATCGCAACGACAA
121163 TATCGCAATGCGAAATG-AAATCGCAACGACAA
1 TATCGCAATGCGAAATGAAAATCGCAACGACAA
121195 GGTGATGGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 15 0.47
33 17 0.53
ACGTcount: A:0.45, C:0.22, G:0.18, T:0.15
Consensus pattern (33 bp):
TATCGCAATGCGAAATGAAAATCGCAACGACAA
Found at i:121273 original size:27 final size:28
Alignment explanation
Indices: 121207--121275 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 28
121197 TGATGGATGT
*
121207 TCTTCTTCTGGAATGTTTATATATGTTG
1 TCTTCTTCTGGAATGTTTATATAAGTTG
*
121235 TCTT-TT-T-AAATGTTTATATAAG-TG
1 TCTTCTTCTGGAATGTTTATATAAGTTG
121259 -CTTACTTCTGGAATGTT
1 TCTT-CTTCTGGAATGTT
121276 ATCTGAGCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
23 3 0.09
24 2 0.06
25 15 0.44
26 2 0.06
27 8 0.24
28 4 0.12
ACGTcount: A:0.22, C:0.10, G:0.16, T:0.52
Consensus pattern (28 bp):
TCTTCTTCTGGAATGTTTATATAAGTTG
Found at i:123060 original size:14 final size:14
Alignment explanation
Indices: 123041--123076 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
123031 ATTGTTTAAT
123041 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
123055 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
123069 TGATTTGT
1 TGATTTGT
123077 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:123184 original size:20 final size:20
Alignment explanation
Indices: 123159--123197 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
123149 ATGTTGAAGG
123159 CAAAACAGACTATCGCAACA
1 CAAAACAGACTATCGCAACA
*
123179 CAAAACTGACTATCGCAAC
1 CAAAACAGACTATCGCAAC
123198 GAGAGAATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.31, G:0.10, T:0.13
Consensus pattern (20 bp):
CAAAACAGACTATCGCAACA
Found at i:123209 original size:14 final size:14
Alignment explanation
Indices: 123190--123243 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
123180 AAAACTGACT
*
123190 ATCGCAACGAGAGA
1 ATCGCAACGAGAAA
123204 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
123223 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
123237 ATCGCAA
1 ATCGCAA
123244 TGCGATTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:123227 original size:19 final size:17
Alignment explanation
Indices: 123203--123248 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 17
123193 GCAACGAGAG
123203 AATCGCAATGCGAAATGAA
1 AATCGCAATGCG-AA-GAA
123222 AATCGCAA--CG-AGAA
1 AATCGCAATGCGAAGAA
123236 AATCGCAATGCGA
1 AATCGCAATGCGA
123249 TTTTCATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
14 11 0.46
15 1 0.04
16 2 0.08
17 2 0.08
19 8 0.33
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.13
Consensus pattern (17 bp):
AATCGCAATGCGAAGAA
Found at i:123313 original size:20 final size:20
Alignment explanation
Indices: 123274--123343 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
123264 GCGATTTTGT
123274 CGTTGCGATAGCCA-TTTCG
1 CGTTGCGATAGCCATTTTCG
*
123293 CGTTGTGATAGCCATTTTCG
1 CGTTGCGATAGCCATTTTCG
123313 CGTTGCGATAGCCATTTTCG
1 CGTTGCGATAGCCATTTTCG
123333 CGTTGCGATAG
1 CGTTGCGATAG
123344 TCAAATGAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
19 13 0.27
20 35 0.73
ACGTcount: A:0.16, C:0.23, G:0.27, T:0.34
Consensus pattern (20 bp):
CGTTGCGATAGCCATTTTCG
Found at i:123579 original size:20 final size:20
Alignment explanation
Indices: 123554--123604 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
123544 AAATGATTGC
*
123554 CTTTCGCAACGCGATTTTAA
1 CTTTCGCAACGCGATTCTAA
*
123574 CTTTCGCAACGCGATTCTGA
1 CTTTCGCAACGCGATTCTAA
123594 CTTTCGCAACG
1 CTTTCGCAACG
123605 AGATAATACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (20 bp):
CTTTCGCAACGCGATTCTAA
Found at i:124374 original size:24 final size:24
Alignment explanation
Indices: 124347--124400 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
124337 GTATTCAAAA
*
124347 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* *
124371 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
124395 TTTGAT
1 TTTGAT
124401 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:124592 original size:12 final size:12
Alignment explanation
Indices: 124575--124599 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
124565 ATATAATCCT
124575 GAAGAAGAAAAA
1 GAAGAAGAAAAA
124587 GAAGAAGAAAAA
1 GAAGAAGAAAAA
124599 G
1 G
124600 TCCCGAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:126912 original size:19 final size:19
Alignment explanation
Indices: 126890--127020 Score: 94
Period size: 19 Copynumber: 7.7 Consensus size: 19
126880 GGAAATTACT
126890 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
126909 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
126923 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
126942 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
126956 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
126975 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
126989 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
127008 ATCGCAACGCGAA
1 ATCGCAATGCGAA
127021 TTTAATTTCT
Statistics
Matches: 84, Mismatches: 13, Indels: 30
0.66 0.10 0.24
Matches are distributed among these distances:
14 27 0.32
15 3 0.04
16 6 0.07
17 6 0.07
18 3 0.04
19 39 0.46
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:126932 original size:33 final size:33
Alignment explanation
Indices: 126890--127016 Score: 202
Period size: 33 Copynumber: 3.8 Consensus size: 33
126880 GGAAATTACT
126890 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
126923 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
126955 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
126989 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
127017 CGAATTTAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
32 1 0.01
33 83 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:126997 original size:66 final size:66
Alignment explanation
Indices: 126891--127023 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
126881 GAAATTACTA
*
126891 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
126956 T
66 T
*
126957 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
127022 T
66 T
127023 T
1 T
127024 AATTTCTCGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
T
Found at i:127038 original size:19 final size:19
Alignment explanation
Indices: 127016--127057 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
127006 AAATCGCAAC
*
127016 GCGAATTTAATTTCTCGTT
1 GCGAATTTAATTTCGCGTT
* *
127035 GCGATTTTCATTTCGCGTT
1 GCGAATTTAATTTCGCGTT
127054 GCGA
1 GCGA
127058 TTCTCTCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (19 bp):
GCGAATTTAATTTCGCGTT
Found at i:127058 original size:19 final size:19
Alignment explanation
Indices: 127033--127091 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
127023 TAATTTCTCG
*
127033 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
*
127052 TTGCGA--TTC---TCTCA
1 TTGCGATTTTCATTTCGCA
127066 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
127085 TTGCGAT
1 TTGCGAT
127092 AGTACTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 9 0.28
16 3 0.09
17 3 0.09
19 17 0.53
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:127070 original size:33 final size:33
Alignment explanation
Indices: 127028--127091 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
127018 GAATTTAATT
* *
127028 TCTCGTTGCGATTTTCATTTCGCGTTGCGATTC
1 TCTCATTGCGATTTTCATTTCGCATTGCGATTC
127061 TCTCATTGCGATTTTCATTTCGCATTGCGAT
1 TCTCATTGCGATTTTCATTTCGCATTGCGAT
127092 AGTACTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.45
Consensus pattern (33 bp):
TCTCATTGCGATTTTCATTTCGCATTGCGATTC
Found at i:127217 original size:14 final size:14
Alignment explanation
Indices: 127198--127234 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
127188 CATCAATTAA
127198 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
127212 ACAAATCACCTTTT
1 ACAAATCAACTTTT
127226 ACAAATCAA
1 ACAAATCAA
127235 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:128650 original size:42 final size:41
Alignment explanation
Indices: 128591--128793 Score: 140
Period size: 42 Copynumber: 4.8 Consensus size: 41
128581 ATGAATCGGG
* * *
128591 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGA-CTCTTCAAGGATGAAAGTGGC
* * *
128633 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGAAAGTGGC
* * * * * * *
128675 CTCTTCAATGATAGGAGTGGACTCTTGAGGGATGAAAATGGC
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGAAAGTGGC
* * *
128717 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGAAAGTGGC
* * * * *
128759 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGA
128794 CAGGCGAGTC
Statistics
Matches: 122, Mismatches: 31, Indels: 16
0.72 0.18 0.09
Matches are distributed among these distances:
41 9 0.07
42 102 0.84
43 11 0.09
ACGTcount: A:0.24, C:0.17, G:0.36, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGACTCTTCAAGGATGAAAGTGGC
Found at i:128657 original size:21 final size:21
Alignment explanation
Indices: 128591--128657 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
128581 ATGAATCGGG
*
128591 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
128611 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
128633 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
128654 CTCT
1 CTCT
128658 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:128732 original size:84 final size:84
Alignment explanation
Indices: 128629--128793 Score: 321
Period size: 84 Copynumber: 2.0 Consensus size: 84
128619 ACGATGACAG
*
128629 TGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAATGATAGGAGTG
1 TGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGTG
128694 GACTCTTGAGGGATGAAAA
66 GACTCTTGAGGGATGAAAA
128713 TGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGTG
1 TGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGTG
128778 GACTCTTGAGGGATGA
66 GACTCTTGAGGGATGA
128794 CAGGCGAGTC
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.24, C:0.16, G:0.38, T:0.22
Consensus pattern (84 bp):
TGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGTG
GACTCTTGAGGGATGAAAA
Done.