genome.fa.s1481.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001481.1 Hibiscus syriacus cultivar Beakdansim tig00002877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67811

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646--689	19	2.3	20	92	7	74	47	0	29	22	1.51
910--943	17	2.1	15	89	10	50	50	2	5	41	1.42
914--966	24	2.2	25	86	3	72	52	1	3	41	1.30
1177--1235	20	3.0	20	85	7	77	42	8	10	38	1.69
1211--1256	23	2.0	23	91	0	74	47	6	2	43	1.41
1178--1243	19	3.4	19	89	2	87	43	7	7	40	1.61
1331--1395	7	9.3	7	79	0	67	47	30	1	20	1.59
1331--1395	21	3.1	21	79	0	76	47	30	1	20	1.59
2270--2388	24	5.0	24	87	4	168	40	20	13	26	1.89
2270--2406	48	2.9	48	78	8	145	41	19	13	25	1.88
2270--2411	72	2.0	70	83	9	180	42	19	12	25	1.86
5980--6020	13	3.2	13	89	3	66	53	9	0	36	1.34
6117--6159	21	2.0	21	86	8	61	51	30	0	18	1.47
6523--6567	13	3.3	13	77	22	56	51	6	0	42	1.28
6492--6542	20	2.4	21	74	9	59	45	5	7	41	1.57
6518--6567	15	3.4	15	76	23	61	50	6	2	42	1.38
6642--6705	14	4.6	14	76	7	60	48	31	1	18	1.58
5696--7387	546	3.1	545	90	5	2549	42	12	9	35	1.75
7072--7125	15	3.4	16	82	12	67	51	7	1	38	1.41
7072--7114	15	2.8	15	92	3	68	48	6	2	41	1.43
8487--8528	23	1.9	21	85	9	57	42	0	7	50	1.30
9358--9431	32	2.3	31	86	6	103	35	16	25	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9375--9429	16	3.4	16	79	0	65	36	16	25	21	1.94
9539--9583	22	2.0	22	95	0	81	13	22	35	28	1.92
9916--9964	23	2.1	23	84	0	62	40	8	18	32	1.80
9992--10048	23	2.4	23	76	2	60	36	12	14	36	1.83
9879--10039	85	1.9	86	90	2	261	42	12	13	31	1.82
10046--10754	198	3.6	196	81	6	759	31	13	13	41	1.84
10666--10704	20	2.0	19	85	5	51	35	12	2	48	1.55
14794--14833	21	1.9	21	89	0	62	50	10	10	30	1.69
14818--15186	177	2.1	179	85	2	492	29	17	14	38	1.89
14996--15734	196	3.7	196	86	3	1027	31	15	14	39	1.87
14996--15738	394	1.9	394	88	2	1134	31	15	14	39	1.87
15842--15871	15	2.0	15	100	0	60	26	6	20	46	1.75
20163--21326	200	5.8	200	87	2	1577	32	15	13	38	1.86
21769--21817	19	2.6	19	96	0	89	57	10	0	32	1.32
22136--22174	18	2.2	18	95	0	69	7	35	0	56	1.28
22816--22872	24	2.5	23	86	8	80	50	5	0	43	1.24
24731--25384	182	3.6	182	89	1	971	26	16	13	42	1.86
25442--25468	11	2.5	11	100	0	54	18	18	7	55	1.65
28528--28592	21	3.1	21	81	0	67	47	24	1	26	1.61
28965--29010	13	3.4	13	85	11	65	52	8	2	36	1.45
28950--28988	20	2.0	19	85	5	51	51	7	2	38	1.44
28965--29001	15	2.5	15	95	0	65	51	8	0	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28965--29010	15	3.2	14	85	11	58	52	8	2	36	1.45
29085--29156	7	10.3	7	80	0	72	50	30	0	19	1.48
29085--29156	21	3.4	21	88	3	101	50	30	0	19	1.48
29530--29576	13	3.3	13	78	21	58	51	8	0	40	1.33
29525--29576	15	3.4	15	91	2	86	50	7	1	40	1.42
29648--29692	14	3.2	14	90	0	63	48	26	0	24	1.51
29668--29733	21	3.1	21	89	4	80	50	28	1	19	1.57
29648--29733	14	6.2	13	76	8	55	48	27	1	22	1.57
28528--30669	564	3.8	577	91	4	3285	43	12	8	36	1.73
30107--30154	15	2.9	17	81	12	73	54	6	0	39	1.26
30249--30293	21	2.1	21	88	8	65	51	28	0	20	1.48
30632--30674	20	2.2	20	82	0	50	46	6	11	34	1.67
30744--30795	7	7.4	7	78	8	52	51	26	0	21	1.47
30658--30761	49	2.1	49	82	7	122	50	10	8	30	1.67
30744--30795	21	2.5	21	90	0	86	51	26	0	21	1.47
31132--31213	21	4.0	20	72	12	76	23	24	18	34	1.96
31223--31284	20	3.1	20	83	0	79	24	25	16	33	1.95
31788--31846	20	3.0	20	87	0	73	15	18	22	44	1.87
33164--33212	18	2.7	18	87	0	71	28	40	12	18	1.86
33764--33850	19	4.8	19	76	15	67	45	18	20	14	1.84
33792--33851	19	3.4	19	76	21	76	50	18	18	13	1.78
35290--35328	14	2.8	14	84	0	51	35	0	17	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35424--35462	20	2.0	20	89	0	60	43	30	12	12	1.81
35470--35532	19	3.3	19	95	0	117	47	17	19	15	1.83
35479--35539	19	3.2	18	86	4	77	52	14	19	13	1.74
35558--35611	20	2.7	20	94	0	90	12	20	25	40	1.88
36157--36332	20	8.7	20	78	10	144	23	19	22	34	1.96
36242--36372	41	3.2	41	72	12	142	22	19	18	40	1.91
36217--36375	82	1.9	82	94	0	282	23	18	18	39	1.92
36372--36425	21	2.5	21	93	3	90	46	14	20	18	1.84
38832--38875	16	2.8	16	78	0	61	36	13	20	29	1.91
39329--39386	23	2.5	23	80	5	64	48	6	13	31	1.69
39678--39858	65	2.8	63	80	5	193	28	25	18	28	1.98
44828--44891	23	2.8	23	87	0	101	29	26	26	17	1.97
46603--46652	21	2.4	21	93	0	91	22	26	22	30	1.99
54224--54255	14	2.3	14	100	0	64	43	0	12	43	1.42
66073--66176	24	4.3	24	85	0	118	19	9	15	55	1.67

Tables:   1

The End!