Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001482.1 Hibiscus syriacus cultivar Beakdansim tig00002878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 170297
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:1729 original size:44 final size:43
Alignment explanation
Indices: 1681--1764 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 43
1671 ATGCATCCCT
* *
1681 TTGAATATGTATCGATGCATCAACATGATGCACCGATGCATGAC
1 TTGAATATGCATCGATGCAT-AACATCATGCACCGATGCATGAC
**
1725 TTGAATATGCATCGATGCATAAGTTCATGCACCGATGCAT
1 TTGAATATGCATCGATGCATAACATCATGCACCGATGCAT
1765 CTATCGGGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 17 0.47
44 19 0.53
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (43 bp):
TTGAATATGCATCGATGCATAACATCATGCACCGATGCATGAC
Found at i:3306 original size:21 final size:21
Alignment explanation
Indices: 3280--3320 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3270 CCGGGAGCTT
*
3280 GTTCTTCTCGAGCTGCTCCTA
1 GTTCTTCTCGAGCTCCTCCTA
*
3301 GTTCTTCTCGTGCTCCTCCT
1 GTTCTTCTCGAGCTCCTCCT
3321 CCTCCGGCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.37, G:0.17, T:0.41
Consensus pattern (21 bp):
GTTCTTCTCGAGCTCCTCCTA
Found at i:4335 original size:20 final size:20
Alignment explanation
Indices: 4310--4348 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
4300 TTTTCAAAGG
4310 CATGCACCGATGCATCAATC
1 CATGCACCGATGCATCAATC
*
4330 CATGCATCGATGCATCAAT
1 CATGCACCGATGCATCAAT
4349 GAATAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (20 bp):
CATGCACCGATGCATCAATC
Found at i:7227 original size:31 final size:31
Alignment explanation
Indices: 7190--7317 Score: 132
Period size: 31 Copynumber: 4.1 Consensus size: 31
7180 GAACCTCAGC
* *
7190 AACTGTCCATAAGTCCCGAAGAACCTAGGTA
1 AACTGTCCATATGTCCCGAAGAACATAGGTA
* **
7221 AACTGTCCATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATATGTCCCGAAGAACATAGGTA
* *
7252 TATTGTCCATATGTCCCGAA-AGACATAGGTA
1 AACTGTCCATATGTCCCGAAGA-ACATAGGTA
* * * *
7283 ATTCTGTCCATATGTTCCGTAGAACATAAGTA
1 A-ACTGTCCATATGTCCCGAAGAACATAGGTA
7315 AAC
1 AAC
7318 CCTCGACTCT
Statistics
Matches: 77, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
30 1 0.01
31 51 0.66
32 24 0.31
33 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (31 bp):
AACTGTCCATATGTCCCGAAGAACATAGGTA
Found at i:7309 original size:63 final size:62
Alignment explanation
Indices: 7193--7310 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 62
7183 CCTCAGCAAC
* *
7193 TGTCCATAAGTCCCGAAGAACCTAGGTAAACTGTCCATATGTTCCTTAGAACATAGGTATAT
1 TGTCCATAAGTCCCGAAGAACATAGGTAAACTGTCCATATGTTCCGTAGAACATAGGTATAT
* *
7255 TGTCCATATGTCCCGAA-AGACATAGGTAATTCTGTCCATATGTTCCGTAGAACATA
1 TGTCCATAAGTCCCGAAGA-ACATAGGTAA-ACTGTCCATATGTTCCGTAGAACATA
7311 AGTAAACCCT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
61 1 0.02
62 25 0.50
63 24 0.48
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (62 bp):
TGTCCATAAGTCCCGAAGAACATAGGTAAACTGTCCATATGTTCCGTAGAACATAGGTATAT
Found at i:15730 original size:26 final size:26
Alignment explanation
Indices: 15701--15751 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15691 GAAAATAAAA
*
15701 TAATACTTA-AATAATAATATTATTAT
1 TAATAATTATAATAATAATA-TATTAT
*
15727 TAATAATTATTATAATAATATATTA
1 TAATAATTATAATAATAATATATTA
15752 AAAATGGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
TAATAATTATAATAATAATATATTAT
Found at i:15732 original size:15 final size:14
Alignment explanation
Indices: 15711--15751 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
15701 TAATACTTAA
15711 ATAATAATATTATT
1 ATAATAATATTATT
15725 AT--TAATAATTATT
1 ATAATAAT-ATTATT
15738 ATAATAATA-TATT
1 ATAATAATATTATT
15751 A
1 A
15752 AAAATGGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 4 0.17
13 13 0.54
14 3 0.12
15 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
ATAATAATATTATT
Found at i:16208 original size:2 final size:2
Alignment explanation
Indices: 16156--16189 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
16146 ACATTATAAT
* *
16156 TA TA TA TA GA TA TA TG TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16190 GAAACAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (2 bp):
TA
Found at i:16468 original size:20 final size:20
Alignment explanation
Indices: 16439--16479 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
16429 TCACTAAAAT
16439 TTAAAATTTTAATTTACTCA
1 TTAAAATTTTAATTTACTCA
*
16459 TTAAATTTTTAATTTACTCA
1 TTAAAATTTTAATTTACTCA
16479 T
1 T
16480 ATATTGATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (20 bp):
TTAAAATTTTAATTTACTCA
Found at i:35457 original size:88 final size:91
Alignment explanation
Indices: 35321--35485 Score: 255
Period size: 89 Copynumber: 1.8 Consensus size: 91
35311 CAGTCAATAT
* *
35321 TGTGTGAACTAAGCAAAGACCTTTGCTCTCTTAACAAAGGAATGAGT-AATATTTACAAGACATC
1 TGTGTGAACTAAGCAAAGACCTTT-CACTCTTAACAAAGGAATGAGTAAAAATTTACAAGACATC
35385 AAAAGTCCTCGTTTTACACTCGAATGC
65 AAAAGTCCTCGTTTTACACTCGAATGC
* * *
35412 TGTGTGCACTAAG-AAAGACCTTT-ACTCTTGACAAAGGAATGAGTAAAAATTTATAAGACATCA
1 TGTGTGAACTAAGCAAAGACCTTTCACTCTTAACAAAGGAATGAGTAAAAATTTACAAGACATCA
35475 AAAGTCCTCGT
66 AAAGTCCTCGT
35486 AGGAAGACAA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
88 19 0.28
89 27 0.40
90 10 0.15
91 12 0.18
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (91 bp):
TGTGTGAACTAAGCAAAGACCTTTCACTCTTAACAAAGGAATGAGTAAAAATTTACAAGACATCA
AAAGTCCTCGTTTTACACTCGAATGC
Found at i:45735 original size:3 final size:3
Alignment explanation
Indices: 45727--45800 Score: 139
Period size: 3 Copynumber: 24.3 Consensus size: 3
45717 ACAGGAAAAC
45727 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
45775 ATT ATT ATT ATT ATT ATT ATTT ATT A
1 ATT ATT ATT ATT ATT ATT A-TT ATT A
45801 ACACAGGAAA
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 67 0.96
4 3 0.04
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:47928 original size:29 final size:29
Alignment explanation
Indices: 47895--47993 Score: 90
Period size: 29 Copynumber: 3.3 Consensus size: 29
47885 ACAGTAATGT
47895 AAGATTACAGTGTTTAGTTTAAGGAATAA
1 AAGATTACAGTGTTTAGTTTAAGGAATAA
* * * *** **
47924 AAGATTACTAAAATGTATATTTTATCAAATTGT
1 AAGATTAC---AGTGTTTAGTTTAAGGAA-TAA
47957 AAGATTACAGTGTTTAGTTTAAGGAATAA
1 AAGATTACAGTGTTTAGTTTAAGGAATAA
47986 AAGATTAC
1 AAGATTAC
47994 TAAAATGTAT
Statistics
Matches: 50, Mismatches: 16, Indels: 8
0.68 0.22 0.11
Matches are distributed among these distances:
29 17 0.34
30 12 0.24
32 12 0.24
33 9 0.18
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.36
Consensus pattern (29 bp):
AAGATTACAGTGTTTAGTTTAAGGAATAA
Found at i:47963 original size:62 final size:62
Alignment explanation
Indices: 47892--48017 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
47882 TTGACAGTAA
47892 TGTAAGATTACAGTGTTTAGTTTAAGGAATAAAAGATTACTAAAATGTATATTTTATCAAAT
1 TGTAAGATTACAGTGTTTAGTTTAAGGAATAAAAGATTACTAAAATGTATATTTTATCAAAT
47954 TGTAAGATTACAGTGTTTAGTTTAAGGAATAAAAGATTACTAAAATGTATATTTTATCAAAT
1 TGTAAGATTACAGTGTTTAGTTTAAGGAATAAAAGATTACTAAAATGTATATTTTATCAAAT
48016 TG
1 TG
48018 ACCTTGTTCT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (62 bp):
TGTAAGATTACAGTGTTTAGTTTAAGGAATAAAAGATTACTAAAATGTATATTTTATCAAAT
Found at i:48073 original size:15 final size:15
Alignment explanation
Indices: 48055--48085 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48045 AAATTTTAAA
48055 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
48070 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
48085 T
1 T
48086 CATCGATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:48100 original size:27 final size:27
Alignment explanation
Indices: 48070--48126 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
48060 AAATAAAAAT
*
48070 TATTTATATAAAAATTCATCGATAATA
1 TATTTAAATAAAAATTCATCGATAATA
*
48097 TATTTAAATAAAAATTCATTGATAATA
1 TATTTAAATAAAAATTCATCGATAATA
48124 TAT
1 TAT
48127 CATTTTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (27 bp):
TATTTAAATAAAAATTCATCGATAATA
Found at i:48162 original size:21 final size:21
Alignment explanation
Indices: 48120--48159 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
48110 ATTCATTGAT
*
48120 AATATATCATTTTATTATTTA
1 AATATATCATTGTATTATTTA
48141 AATATATCA-TGTATTATTT
1 AATATATCATTGTATTATTT
48160 TAATTTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (21 bp):
AATATATCATTGTATTATTTA
Found at i:48791 original size:21 final size:21
Alignment explanation
Indices: 48767--48817 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
48757 GAAGTTGCAA
48767 CGAATCCTAG-AAAACACTGTC
1 CGAATCC-AGCAAAACACTGTC
*
48788 CGAATACCAGCCAAACACTGTC
1 CGAAT-CCAGCAAAACACTGTC
*
48810 TGAATCCA
1 CGAATCCA
48818 TCCTTTTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.37, C:0.31, G:0.14, T:0.18
Consensus pattern (21 bp):
CGAATCCAGCAAAACACTGTC
Found at i:52476 original size:15 final size:16
Alignment explanation
Indices: 52431--52473 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
52421 GCGGTAAAGT
*
52431 ACAAGCTTCCCCATCA
1 ACAAGCATCCCCATCA
52447 ACAAGCATCCCCATCA
1 ACAAGCATCCCCATCA
*
52463 ATAAGCATCCC
1 ACAAGCATCCC
52474 ATCTGTAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.35, C:0.42, G:0.07, T:0.16
Consensus pattern (16 bp):
ACAAGCATCCCCATCA
Found at i:53688 original size:27 final size:27
Alignment explanation
Indices: 53650--53764 Score: 230
Period size: 27 Copynumber: 4.3 Consensus size: 27
53640 TATGAATATC
53650 TAAATATCCTTTAATTAAGGGATTCTG
1 TAAATATCCTTTAATTAAGGGATTCTG
53677 TAAATATCCTTTAATTAAGGGATTCTG
1 TAAATATCCTTTAATTAAGGGATTCTG
53704 TAAATATCCTTTAATTAAGGGATTCTG
1 TAAATATCCTTTAATTAAGGGATTCTG
53731 TAAATATCCTTTAATTAAGGGATTCTG
1 TAAATATCCTTTAATTAAGGGATTCTG
53758 TAAATAT
1 TAAATAT
53765 TCTACAGTCC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (27 bp):
TAAATATCCTTTAATTAAGGGATTCTG
Found at i:58865 original size:12 final size:12
Alignment explanation
Indices: 58850--58883 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
58840 ACCGTAGACC
58850 TGACCCGACCGT
1 TGACCCGACCGT
58862 TGACCCGACCGT
1 TGACCCGACCGT
58874 TGACCCGACC
1 TGACCCGACC
58884 CGTAAACCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.18, C:0.44, G:0.24, T:0.15
Consensus pattern (12 bp):
TGACCCGACCGT
Found at i:58954 original size:29 final size:29
Alignment explanation
Indices: 58912--59094 Score: 215
Period size: 29 Copynumber: 6.2 Consensus size: 29
58902 ACCGTTGACT
*
58912 GGGTGTTAGTTTCGTAATTATTTTTAAAA
1 GGGTGTTATTTTCGTAATTATTTTTAAAA
* *
58941 GTGTGCTATTTTCGTAATTATTTTTAAAA
1 GGGTGTTATTTTCGTAATTATTTTTAAAA
** *
58970 GGGTACTAGTTTCGTAATTATTTTTAAAA
1 GGGTGTTATTTTCGTAATTATTTTTAAAA
* *
58999 AGGTGTTATTTTCTTAATGT-TTTTTAAAA
1 GGGTGTTATTTTCGTAAT-TATTTTTAAAA
* *
59028 GGGTGTTATTTTCGTCAATATGTTTTTTGAAA
1 GGGTGTTATTTTCGT-AAT-T-ATTTTTAAAA
*
59060 GGGTGTTATTTTCGTAAATATTTTTAAAAA
1 GGGTGTTATTTTCGTAATTATTTTT-AAAA
59090 GGGTG
1 GGGTG
59095 ATAATTGTGT
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
29 92 0.70
30 14 0.11
31 2 0.02
32 23 0.18
ACGTcount: A:0.27, C:0.05, G:0.19, T:0.49
Consensus pattern (29 bp):
GGGTGTTATTTTCGTAATTATTTTTAAAA
Found at i:62584 original size:27 final size:27
Alignment explanation
Indices: 62546--62660 Score: 230
Period size: 27 Copynumber: 4.3 Consensus size: 27
62536 TATGAATATC
62546 TAAATATCCTTTAATTAAGGGATTCTG
1 TAAATATCCTTTAATTAAGGGATTCTG
62573 TAAATATCCTTTAATTAAGGGATTCTG
1 TAAATATCCTTTAATTAAGGGATTCTG
62600 TAAATATCCTTTAATTAAGGGATTCTG
1 TAAATATCCTTTAATTAAGGGATTCTG
62627 TAAATATCCTTTAATTAAGGGATTCTG
1 TAAATATCCTTTAATTAAGGGATTCTG
62654 TAAATAT
1 TAAATAT
62661 TCTACAGTCC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (27 bp):
TAAATATCCTTTAATTAAGGGATTCTG
Found at i:67764 original size:12 final size:12
Alignment explanation
Indices: 67749--67782 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
67739 ACCGTAGACC
67749 TGACCCGACCGT
1 TGACCCGACCGT
67761 TGACCCGACCGT
1 TGACCCGACCGT
67773 TGACCCGACC
1 TGACCCGACC
67783 CGTAAACCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.18, C:0.44, G:0.24, T:0.15
Consensus pattern (12 bp):
TGACCCGACCGT
Found at i:67853 original size:29 final size:29
Alignment explanation
Indices: 67811--67993 Score: 215
Period size: 29 Copynumber: 6.2 Consensus size: 29
67801 ACCGTTGACT
*
67811 GGGTGTTAGTTTCGTAATTATTTTTAAAA
1 GGGTGTTATTTTCGTAATTATTTTTAAAA
* *
67840 GTGTGCTATTTTCGTAATTATTTTTAAAA
1 GGGTGTTATTTTCGTAATTATTTTTAAAA
** *
67869 GGGTACTAGTTTCGTAATTATTTTTAAAA
1 GGGTGTTATTTTCGTAATTATTTTTAAAA
* *
67898 AGGTGTTATTTTCTTAATGT-TTTTTAAAA
1 GGGTGTTATTTTCGTAAT-TATTTTTAAAA
* *
67927 GGGTGTTATTTTCGTCAATATGTTTTTTGAAA
1 GGGTGTTATTTTCGT-AAT-T-ATTTTTAAAA
*
67959 GGGTGTTATTTTCGTAAATATTTTTAAAAA
1 GGGTGTTATTTTCGTAATTATTTTT-AAAA
67989 GGGTG
1 GGGTG
67994 ATAATTGTGT
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
29 92 0.70
30 14 0.11
31 2 0.02
32 23 0.18
ACGTcount: A:0.27, C:0.05, G:0.19, T:0.49
Consensus pattern (29 bp):
GGGTGTTATTTTCGTAATTATTTTTAAAA
Found at i:71352 original size:15 final size:16
Alignment explanation
Indices: 71332--71361 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
71322 GATCTACGTG
71332 AATACATGT-ATATGT
1 AATACATGTGATATGT
71347 AATACATGTGATATG
1 AATACATGTGATATG
71362 ATATGAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.37
Consensus pattern (16 bp):
AATACATGTGATATGT
Found at i:71536 original size:31 final size:31
Alignment explanation
Indices: 71498--71598 Score: 184
Period size: 31 Copynumber: 3.3 Consensus size: 31
71488 GAGTCGAGGG
71498 TTTACCTATGTTTAAAGGCACATATGGACAA
1 TTTACCTATGTTTAAAGGCACATATGGACAA
*
71529 TTTACCTATGTTTAAAGGCACATATGGATAA
1 TTTACCTATGTTTAAAGGCACATATGGACAA
*
71560 TTTACCTATGTTTAAAGGCACATATGGACAG
1 TTTACCTATGTTTAAAGGCACATATGGACAA
71591 TTTACCTA
1 TTTACCTA
71599 GGTTCTTCGG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 67 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Consensus pattern (31 bp):
TTTACCTATGTTTAAAGGCACATATGGACAA
Found at i:75064 original size:15 final size:16
Alignment explanation
Indices: 75044--75073 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75034 GATCTACGTG
75044 AATACATGT-ATATGT
1 AATACATGTGATATGT
75059 AATACATGTGATATG
1 AATACATGTGATATG
75074 ATATGAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.37
Consensus pattern (16 bp):
AATACATGTGATATGT
Found at i:75248 original size:31 final size:31
Alignment explanation
Indices: 75210--75279 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
75200 GAGTCGAGGG
*
75210 TTTACCTATGTTTAAAGGCACATATGGACAA
1 TTTACCTATGTTTAAAGGAACATATGGACAA
*
75241 TTTACCTATGTTTAAAGGAACATATGGACAG
1 TTTACCTATGTTTAAAGGAACATATGGACAA
75272 TTTACCTA
1 TTTACCTA
75280 GGTTCTTCGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (31 bp):
TTTACCTATGTTTAAAGGAACATATGGACAA
Found at i:77207 original size:19 final size:19
Alignment explanation
Indices: 77183--77238 Score: 103
Period size: 19 Copynumber: 2.9 Consensus size: 19
77173 AAATGCATTT
77183 TATGCATCGATGCACATAC
1 TATGCATCGATGCACATAC
77202 TATGCATCGATGCACATAC
1 TATGCATCGATGCACATAC
*
77221 CATGCATCGATGCACATA
1 TATGCATCGATGCACATA
77239 GGCTTATTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (19 bp):
TATGCATCGATGCACATAC
Found at i:79221 original size:21 final size:21
Alignment explanation
Indices: 79196--79236 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79186 TAAGACTCTA
79196 TTTTCAAAATACAAAAATGAT
1 TTTTCAAAATACAAAAATGAT
**
79217 TTTTCAAAATTGAAAAATGA
1 TTTTCAAAATACAAAAATGA
79237 AAATAGTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.34
Consensus pattern (21 bp):
TTTTCAAAATACAAAAATGAT
Found at i:81986 original size:31 final size:31
Alignment explanation
Indices: 81951--82023 Score: 146
Period size: 31 Copynumber: 2.4 Consensus size: 31
81941 TGGGACTCCA
81951 AATCAAGCAAAGAAAAGATGGCATCTTCATC
1 AATCAAGCAAAGAAAAGATGGCATCTTCATC
81982 AATCAAGCAAAGAAAAGATGGCATCTTCATC
1 AATCAAGCAAAGAAAAGATGGCATCTTCATC
82013 AATCAAGCAAA
1 AATCAAGCAAA
82024 ATATGTCAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.18
Consensus pattern (31 bp):
AATCAAGCAAAGAAAAGATGGCATCTTCATC
Found at i:85542 original size:46 final size:46
Alignment explanation
Indices: 85490--85595 Score: 185
Period size: 46 Copynumber: 2.3 Consensus size: 46
85480 TGCACTCTCC
** *
85490 ATGCATCGATGCACTCTGGTTTTAATTAAAACATCGAATGTATTTT
1 ATGCATCGATGCACTCTGGTTTTAATTAAAACATCGAATACACTTT
85536 ATGCATCGATGCACTCTGGTTTTAATTAAAACATCGAATACACTTT
1 ATGCATCGATGCACTCTGGTTTTAATTAAAACATCGAATACACTTT
85582 ATGCATCGATGCAC
1 ATGCATCGATGCAC
85596 ATACCATGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (46 bp):
ATGCATCGATGCACTCTGGTTTTAATTAAAACATCGAATACACTTT
Found at i:87269 original size:28 final size:29
Alignment explanation
Indices: 87150--87336 Score: 218
Period size: 29 Copynumber: 6.4 Consensus size: 29
87140 ACCGTTGACC
*
87150 GGGTGTTAGTTTT-GTAGTTATTTTTAAAA
1 GGGTGTTA-TTTTCGTAATTATTTTTAAAA
* * *
87179 GGGTGCTATTTTCGTATTTAGTTTTAAAA
1 GGGTGTTATTTTCGTAATTATTTTTAAAA
87208 GGGTGTTATTTTCGTAATTATTTTTAAAA
1 GGGTGTTATTTTCGTAATTATTTTTAAAA
* * *
87237 AGGTGTTGTGTTT-GTAATTGTTTTTAAAA
1 GGGTGTTAT-TTTCGTAATTATTTTTAAAA
87266 -GGTGTTATTTTCGTAATTATTTTTAAAA
1 GGGTGTTATTTTCGTAATTATTTTTAAAA
* * * * *
87294 TGGTGCTATTTTCGAAAATATTTTTTGAAA
1 GGGTGTTATTTTCGTAATTA-TTTTTAAAA
87324 GGGTGTTATTTTC
1 GGGTGTTATTTTC
87337 ATAAATTCTT
Statistics
Matches: 136, Mismatches: 17, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
27 3 0.02
28 26 0.19
29 85 0.62
30 22 0.16
ACGTcount: A:0.25, C:0.04, G:0.20, T:0.51
Consensus pattern (29 bp):
GGGTGTTATTTTCGTAATTATTTTTAAAA
Found at i:87304 original size:86 final size:87
Alignment explanation
Indices: 87151--87335 Score: 232
Period size: 86 Copynumber: 2.1 Consensus size: 87
87141 CCGTTGACCG
* * *
87151 GGTGTTAGTTTTGTAGTTATTTTTAAAAGGGTGCTATTTTCGTATTTAGTTTTAAAAGGGTGTTA
1 GGTGTTAGTTTTGTAATTATTTTTAAAAGGGTGCTATTTTCGTAATTAGTTTTAAAAGGGTGCTA
* *
87216 TTTTCGTAATTATTTTTAAAAA
66 TTTTCGAAAATATTTTTAAAAA
* * * *
87238 GGTGTT-GTGTTTGTAATTGTTTTTAAAA-GGTGTTATTTTCGTAATTATTTTTAAAATGGTGCT
1 GGTGTTAGT-TTTGTAATTATTTTTAAAAGGGTGCTATTTTCGTAATTAGTTTTAAAAGGGTGCT
* *
87301 ATTTTCGAAAATATTTTTTGAAAG
65 ATTTTCGAAAATA-TTTTTAAAAA
87325 GGTGTTA-TTTT
1 GGTGTTAGTTTT
87336 CATAAATTCT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
86 46 0.55
87 38 0.45
ACGTcount: A:0.25, C:0.03, G:0.20, T:0.51
Consensus pattern (87 bp):
GGTGTTAGTTTTGTAATTATTTTTAAAAGGGTGCTATTTTCGTAATTAGTTTTAAAAGGGTGCTA
TTTTCGAAAATATTTTTAAAAA
Found at i:91203 original size:25 final size:24
Alignment explanation
Indices: 91175--91223 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
91165 TTAATAAAAA
91175 AATAT-TTATCTAATGACAAATATTT
1 AATATATT-TCTAATGA-AAATATTT
*
91200 AATATATTTCTAATGATAATATTT
1 AATATATTTCTAATGAAAATATTT
91224 GTAATAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 7 0.32
25 13 0.59
26 2 0.09
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (24 bp):
AATATATTTCTAATGAAAATATTT
Found at i:91373 original size:14 final size:14
Alignment explanation
Indices: 91354--91464 Score: 61
Period size: 14 Copynumber: 7.9 Consensus size: 14
91344 TATGTGACAA
91354 GGTTTAGGATTTAG
1 GGTTTAGGATTTAG
*
91368 GGTTTA-TAGTTTAG
1 GGTTTAGGA-TTTAG
* *
91382 GATTTATGG-TTTAT
1 GGTTTA-GGATTTAG
* *
91396 AGTTTAGGATTTAT
1 GGTTTAGGATTTAG
91410 GGTTTA-GAGTTTA-
1 GGTTTAGGA-TTTAG
* * * *
91423 TGTGATATGATTTAA
1 GGT-TTAGGATTTAG
91438 GGTTTA-GAGTTTAG
1 GGTTTAGGA-TTTAG
91452 GGTTTAGGATTTA
1 GGTTTAGGATTTA
91465 AGTGATAGCA
Statistics
Matches: 75, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
13 9 0.12
14 60 0.80
15 6 0.08
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (14 bp):
GGTTTAGGATTTAG
Found at i:91381 original size:21 final size:21
Alignment explanation
Indices: 91355--91422 Score: 118
Period size: 21 Copynumber: 3.2 Consensus size: 21
91345 ATGTGACAAG
*
91355 GTTTAGGATTTAGGGTTTATA
1 GTTTAGGATTTATGGTTTATA
91376 GTTTAGGATTTATGGTTTATA
1 GTTTAGGATTTATGGTTTATA
*
91397 GTTTAGGATTTATGGTTTAGA
1 GTTTAGGATTTATGGTTTATA
91418 GTTTA
1 GTTTA
91423 TGTGATATGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (21 bp):
GTTTAGGATTTATGGTTTATA
Found at i:91415 original size:7 final size:7
Alignment explanation
Indices: 91354--91424 Score: 51
Period size: 7 Copynumber: 10.1 Consensus size: 7
91344 TATGTGACAA
91354 GGTTTA-
1 GGTTTAT
*
91360 GGATTTAG
1 GG-TTTAT
91368 GGTTTAT
1 GGTTTAT
*
91375 AGTTTA-
1 GGTTTAT
91381 GGATTTAT
1 GG-TTTAT
91389 GGTTTAT
1 GGTTTAT
*
91396 AGTTTA-
1 GGTTTAT
91402 GGATTTAT
1 GG-TTTAT
91410 GGTTTA-
1 GGTTTAT
91416 GAGTTTAT
1 G-GTTTAT
91424 G
1 G
91425 TGATATGATT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
6 5 0.10
7 40 0.77
8 7 0.13
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (7 bp):
GGTTTAT
Found at i:91443 original size:42 final size:41
Alignment explanation
Indices: 91352--91499 Score: 135
Period size: 42 Copynumber: 3.5 Consensus size: 41
91342 ATTATGTGAC
* *
91352 AAGGTTTAGGATTTAGGGTTTATAGTTTAG-GATTTATGGTTT
1 AAGGTTTAGGATTTAGGGTTTAGAGTTTAGTGA--TATGATTT
*
91394 ATA-GTTTAGGATTTATGGTTTAGAGTTTATGTGATATGATTT
1 A-AGGTTTAGGATTTAGGGTTTAGAGTTTA-GTGATATGATTT
91436 AAGGTTTA-GAGTTTAGGGTTTAG-GATTTAAGTGATA-GCATTT
1 AAGGTTTAGGA-TTTAGGGTTTAGAG-TTT-AGTGATATG-ATTT
* * *
91478 AAGATTTAGGGTTTAGAGTTTA
1 AAGGTTTAGGATTTAGGGTTTA
91500 TGTGTTAAGG
Statistics
Matches: 90, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
41 5 0.06
42 79 0.88
43 4 0.04
44 2 0.02
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (41 bp):
AAGGTTTAGGATTTAGGGTTTAGAGTTTAGTGATATGATTT
Found at i:91465 original size:28 final size:27
Alignment explanation
Indices: 91397--91466 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
91387 ATGGTTTATA
* *
91397 GTTTAGGATTTATGGTTTAGAGTTTAT
1 GTTTAGGATTTAAGGTTTAGAGTTTAG
* *
91424 GTGATATGATTTAAGGTTTAGAGTTTAGG
1 GT-TTAGGATTTAAGGTTTAGAGTTTA-G
91453 GTTTAGGATTTAAG
1 GTTTAGGATTTAAG
91467 TGATAGCATT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
27 2 0.06
28 31 0.89
29 2 0.06
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.46
Consensus pattern (27 bp):
GTTTAGGATTTAAGGTTTAGAGTTTAG
Found at i:94165 original size:20 final size:19
Alignment explanation
Indices: 94142--94182 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
94132 CTAGAAGTCA
94142 TCTTAATTAATTGTATGTAT
1 TCTTAATTAATTGTAT-TAT
* *
94162 TCTTATTTTATTGTATTAT
1 TCTTAATTAATTGTATTAT
94181 TC
1 TC
94183 AGTTTAGCGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.61
Consensus pattern (19 bp):
TCTTAATTAATTGTATTAT
Found at i:94893 original size:12 final size:12
Alignment explanation
Indices: 94876--94939 Score: 58
Period size: 12 Copynumber: 5.4 Consensus size: 12
94866 GATTTTTGTA
94876 AGTTTAAATTCG
1 AGTTTAAATTCG
*
94888 AGTTTAAGTTCG
1 AGTTTAAATTCG
* *
94900 AGCTTGAA-TCG
1 AGTTTAAATTCG
* *
94911 AGCTCAAATTCG
1 AGTTTAAATTCG
* *
94923 AGTTTGAGTTCG
1 AGTTTAAATTCG
94935 AGTTT
1 AGTTT
94940 GAATCAAGTT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
11 9 0.22
12 32 0.78
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (12 bp):
AGTTTAAATTCG
Found at i:94922 original size:23 final size:23
Alignment explanation
Indices: 94896--94978 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 23
94886 CGAGTTTAAG
94896 TTCGAGCTTGAATCGAGCTCAAA
1 TTCGAGCTTGAATCGAGCTCAAA
* * * *
94919 TTCGAGTTTGAGTTCGAGTTTGAATCAAG
1 TTCGAGCTTGA-ATCGA----G-CTCAAA
94948 TTCGAGCTTGAATCGAGCTCAAA
1 TTCGAGCTTGAATCGAGCTCAAA
*
94971 ATCGAGCT
1 TTCGAGCT
94979 CGAGTCTCGA
Statistics
Matches: 45, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
23 21 0.47
24 5 0.11
28 5 0.11
29 14 0.31
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (23 bp):
TTCGAGCTTGAATCGAGCTCAAA
Found at i:94951 original size:17 final size:17
Alignment explanation
Indices: 94929--94961 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
94919 TTCGAGTTTG
*
94929 AGTTCGAGTTTGAATCA
1 AGTTCGAGCTTGAATCA
94946 AGTTCGAGCTTGAATC
1 AGTTCGAGCTTGAATC
94962 GAGCTCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.33
Consensus pattern (17 bp):
AGTTCGAGCTTGAATCA
Found at i:94973 original size:29 final size:29
Alignment explanation
Indices: 94893--94982 Score: 66
Period size: 29 Copynumber: 3.3 Consensus size: 29
94883 ATTCGAGTTT
*
94893 AAGTTCGAGCTTGAATCGAGCTCAAATTC
1 AAGTTCGAGCTTGAATCGAGCTCAAAATC
* * ***
94922 GAGTTTGAG--T---TCGAG-TTTGAATC
1 AAGTTCGAGCTTGAATCGAGCTCAAAATC
94945 AAGTTCGAGCTTGAATCGAGCTCAAAATC
1 AAGTTCGAGCTTGAATCGAGCTCAAAATC
* *
94974 GAGCTCGAG
1 AAGTTCGAG
94983 TCTCGAGCTT
Statistics
Matches: 42, Mismatches: 13, Indels: 12
0.63 0.19 0.18
Matches are distributed among these distances:
23 11 0.26
24 5 0.12
25 1 0.02
27 1 0.02
28 5 0.12
29 19 0.45
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (29 bp):
AAGTTCGAGCTTGAATCGAGCTCAAAATC
Found at i:96521 original size:36 final size:36
Alignment explanation
Indices: 96480--96551 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
96470 AAAGTAGAAG
96480 ACCTACACACCAGTCCTAAGAGAAATGCTCACATTT
1 ACCTACACACCAGTCCTAAGAGAAATGCTCACATTT
96516 ACCTACACACCAGTCCTAAGAGAAATGCTCACATTT
1 ACCTACACACCAGTCCTAAGAGAAATGCTCACATTT
96552 GGAACCAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.31, G:0.11, T:0.22
Consensus pattern (36 bp):
ACCTACACACCAGTCCTAAGAGAAATGCTCACATTT
Found at i:100399 original size:12 final size:12
Alignment explanation
Indices: 100382--100409 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
100372 CATGAGACAT
100382 CATACATATATG
1 CATACATATATG
100394 CATACATATATG
1 CATACATATATG
100406 CATA
1 CATA
100410 TATAATAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (12 bp):
CATACATATATG
Found at i:105195 original size:3 final size:3
Alignment explanation
Indices: 105187--105229 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
105177 AATATGTAAC
105187 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
105230 ATATATAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:105562 original size:89 final size:89
Alignment explanation
Indices: 105411--105582 Score: 290
Period size: 89 Copynumber: 1.9 Consensus size: 89
105401 AAGCATTGGA
* * * * *
105411 TTGAACAAGTTCTTCTTATTATGAACTGGTTCTTCTTCGTTGGATGAGTTCTTCTCATTATGAAC
1 TTGAACAAATTCTTCTCATTATGAACTGCTTCTTCCTCGTTAGATGAGTTCTTCTCATTATGAAC
105476 TCTTCTGGAAATGTTGATGTAAGG
66 TCTTCTGGAAATGTTGATGTAAGG
*
105500 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCGTTAGATGAGTTCTTCTCATTATGAAC
1 TTGAACAAATTCTTCTCATTATGAACTGCTTCTTCCTCGTTAGATGAGTTCTTCTCATTATGAAC
105565 TCTTCTGGAAATGTTGAT
66 TCTTCTGGAAATGTTGAT
105583 CCACCTCCTT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 77 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (89 bp):
TTGAACAAATTCTTCTCATTATGAACTGCTTCTTCCTCGTTAGATGAGTTCTTCTCATTATGAAC
TCTTCTGGAAATGTTGATGTAAGG
Found at i:105665 original size:105 final size:105
Alignment explanation
Indices: 105502--105777 Score: 401
Period size: 105 Copynumber: 2.6 Consensus size: 105
105492 ATGTAAGGTT
* *
105502 GAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCGTTA-GATGAGTTCTTCTCATTATGAACT
1 GAACAAGTTCTTCTCATTATGAAC-T-TTC-TCCT--TTAGGACGAGTTCTTCTCATTATGAACT
* *
105566 CTTCTGGAAATGTTGATCCACCTCCTTCTGTGATGGACTTGAAAA
61 CTTCTAGAAATGTTGATCCACCTCCTTCTGTGATGAACTTGAAAA
*
105611 GAACAAGTTTTTCTCATTATGAACTTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTCT
1 GAACAAGTTCTTCTCATTATGAACTTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTCT
* * * * * *
105676 AGAAATGTTGGTTCACCTTCTTCTGTGGTGAATTTGAAAG
66 AGAAATGTTGATCCACCTCCTTCTGTGATGAACTTGAAAA
105716 GAACAAGTTCTTCTCATTATGAACTTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCT
1 GAACAAGTTCTTCTCATTATGAACTTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCT
105778 CCATTAGAAA
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
104 3 0.02
105 121 0.79
106 4 0.03
107 3 0.02
108 1 0.01
109 22 0.14
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (105 bp):
GAACAAGTTCTTCTCATTATGAACTTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTCT
AGAAATGTTGATCCACCTCCTTCTGTGATGAACTTGAAAA
Found at i:105953 original size:136 final size:136
Alignment explanation
Indices: 105716--106337 Score: 977
Period size: 136 Copynumber: 4.6 Consensus size: 136
105706 AATTTGAAAG
* * *
105716 GAACAAGTTCTTCTCATTATGAAC-T-TTCT-CCT-T-TAGGACGAGTTCTTCTCATTATGAACT
1 GAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACT
* ** * * *
105776 CTCCATTAGAAATGTCAATCCCTCAAGCGAGGTA-TCACTGATTGGAAATATTGTGAATCGAGTG
66 CTCCATTGGAAATGTTGATCCCTCAAGCGAGG-AGTCACTGATTCGAAATGTCGTGAATCGAGTG
*
105840 ATAGGTT
130 ATAGGTC
*
105847 GAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTTTTCTCATTATGAACT
1 GAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACT
*
105912 CTCCATTGGAAATATTGATCCCTCAAGCGAGGAGTCACTGATTCGAAATGTCGTGAATCGAGTGA
66 CTCCATTGGAAATGTTGATCCCTCAAGCGAGGAGTCACTGATTCGAAATGTCGTGAATCGAGTGA
105977 TAGGTC
131 TAGGTC
105983 GAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACT
1 GAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACT
* * * *
106048 CTCTATTGGAAATATTGATCCCTCAAGTGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGA
66 CTCCATTGGAAATGTTGATCCCTCAAGCGAGGAGTCACTGATTCGAAATGTCGTGAATCGAGTGA
106113 TAGGTC
131 TAGGTC
* * *
106119 GAACAAGATCTTCTCATTATGAACTTCTTCTCCCTCTGTCAGATGAGTTATTCTCATTATGAACT
1 GAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACT
* * *
106184 CTCTATTGGAAATGTTGATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTTGTGAATCGAGTGA
66 CTCCATTGGAAATGTTGATCCCTCAAGCGAGGAGTCACTGATTCGAAATGTCGTGAATCGAGTGA
106249 TAGGTC
131 TAGGTC
* *
106255 GAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTTTCGGATGAGTTCTTCTCATTATGAACC
1 GAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACT
106320 CTCCATTGGAAATGTTGA
66 CTCCATTGGAAATGTTGA
106338 AAACATTCTG
Statistics
Matches: 457, Mismatches: 28, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
131 23 0.05
132 1 0.00
133 4 0.01
134 3 0.01
135 2 0.00
136 424 0.93
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (136 bp):
GAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACT
CTCCATTGGAAATGTTGATCCCTCAAGCGAGGAGTCACTGATTCGAAATGTCGTGAATCGAGTGA
TAGGTC
Found at i:111915 original size:64 final size:62
Alignment explanation
Indices: 111827--112006 Score: 177
Period size: 64 Copynumber: 2.8 Consensus size: 62
111817 TTGGACTCCT
* * *
111827 AGTGCATCGGTGCACT-AAGAGTGCATCGATGCATGAAGTGTATTCGATGTTTGAA-AAAT-AG
1 AGTGCATCGATGCA-TGGAGAGTGCATCGATGCATGAA-TGCATTCGATGTTTGAATAAATCAG
* *** * *
111888 CCTGGTGCATCGATGCATGGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTAATTAAATC
1 ---AGTGCATCGATGCATGGAGAGTGCATCGATGCAT-GAATGCATTCGATGTTTGAA-TAAATC
111953 AG
61 AG
*
111955 AGTGCATCGATGCATGGAGAGTGCATCGGTGCATTGAATGCATTCGATGTTT
1 AGTGCATCGATGCATGGAGAGTGCATCGATGCA-TGAATGCATTCGATGTTT
112007 CAATTTATTC
Statistics
Matches: 95, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
63 1 0.01
64 85 0.89
65 3 0.03
66 4 0.04
67 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (62 bp):
AGTGCATCGATGCATGGAGAGTGCATCGATGCATGAATGCATTCGATGTTTGAATAAATCAG
Found at i:112041 original size:21 final size:21
Alignment explanation
Indices: 112017--112056 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
112007 CAATTTATTC
112017 ATTGATGCATCGATGCATGGT
1 ATTGATGCATCGATGCATGGT
*
112038 ATTGATGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
112057 CCTTTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (21 bp):
ATTGATGCATCGATGCATGGT
Found at i:112901 original size:24 final size:23
Alignment explanation
Indices: 112830--112910 Score: 87
Period size: 24 Copynumber: 3.6 Consensus size: 23
112820 CATGGTCTTG
* *
112830 TGCATCGATGCACATTCAAGGCA
1 TGCATCGATGCATATTCAAGGGA
* *
112853 TGCATCGGTGC--A-TCATGCGGA
1 TGCATCGATGCATATTCAAG-GGA
112874 TGCATCGATGCATATTCAAAGGGA
1 TGCATCGATGCATATTC-AAGGGA
112898 TGCATCGATGCAT
1 TGCATCGATGCAT
112911 TGTTAAGTGC
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
20 4 0.08
21 13 0.27
23 11 0.23
24 18 0.38
25 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (23 bp):
TGCATCGATGCATATTCAAGGGA
Found at i:112922 original size:44 final size:42
Alignment explanation
Indices: 112807--112930 Score: 115
Period size: 44 Copynumber: 2.8 Consensus size: 42
112797 AAAGCCCGAC
* * *
112807 GGATGCATCGATGCATGGTCTTGTGCATCGATGCACATTCAAG
1 GGATGCATCGATGCATTGT-TAGTGCATCGATGCATATTCAAG
* * **
112850 GCATGCATCGGTGCATCATG-CGGATGCATCGATGCATATTCAAAG
1 GGATGCATCGATGCAT--TGTTAG-TGCATCGATGCATATTC-AAG
*
112895 GGATGCATCGATGCATTGTTAAGTGCATCGGTGCAT
1 GGATGCATCGATGCATTGTT-AGTGCATCGATGCAT
112931 TAAGCACAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
43 17 0.27
44 28 0.44
45 19 0.30
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (42 bp):
GGATGCATCGATGCATTGTTAGTGCATCGATGCATATTCAAG
Found at i:118830 original size:64 final size:64
Alignment explanation
Indices: 118762--118922 Score: 189
Period size: 64 Copynumber: 2.5 Consensus size: 64
118752 TAGCCTGGTA
* * *
118762 CATCGATGCATGGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTAATTAAATCA-GAGTG
1 CATCGATGCATGGATTGTGCATCGGTGCATCAAATGCATTCGATGTTTCAATTAAATCATGA-TG
* ** ** * *
118826 CATCGATACATGGAGAGTGCATCGGTGCATTGAATGCATTCGATGTTTCAATTTATTCATTGATG
1 CATCGATGCATGGATTGTGCATCGGTGCATCAAATGCATTCGATGTTTCAATTAAATCA-TGATG
118891 CATCGATGCATGGTATTGATGCATCGGTGCAT
1 CATCGATGCATGG-ATTG-TGCATCGGTGCAT
118923 GCCTTTGAAA
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
64 49 0.61
65 14 0.17
66 4 0.05
67 13 0.16
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (64 bp):
CATCGATGCATGGATTGTGCATCGGTGCATCAAATGCATTCGATGTTTCAATTAAATCATGATG
Found at i:118908 original size:21 final size:21
Alignment explanation
Indices: 118884--118923 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
118874 CAATTTATTC
118884 ATTGATGCATCGATGCATGGT
1 ATTGATGCATCGATGCATGGT
*
118905 ATTGATGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
118924 CCTTTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (21 bp):
ATTGATGCATCGATGCATGGT
Found at i:119259 original size:19 final size:19
Alignment explanation
Indices: 119235--119271 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
119225 TTTCAATTAG
*
119235 GGGGAATCGATACCCCCTA
1 GGGGAATCGACACCCCCTA
119254 GGGGAATCGACACCCCCT
1 GGGGAATCGACACCCCCT
119272 GGACATACTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.35, G:0.27, T:0.14
Consensus pattern (19 bp):
GGGGAATCGACACCCCCTA
Found at i:127145 original size:21 final size:21
Alignment explanation
Indices: 127120--127186 Score: 134
Period size: 21 Copynumber: 3.2 Consensus size: 21
127110 GTATATGATT
127120 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
127141 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
127162 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
127183 CTTA
1 CTTA
127187 TGGACATTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.28, C:0.10, G:0.27, T:0.34
Consensus pattern (21 bp):
CTTAAGGAATGATATGTGGTC
Found at i:127245 original size:22 final size:22
Alignment explanation
Indices: 127203--127245 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
127193 TTATTATATG
**
127203 GCACTACGGTGCAATTCTACGT
1 GCACTACGGTGCAATGATACGT
*
127225 GCACTTCGGTGCAATGATACG
1 GCACTACGGTGCAATGATACG
127246 AGCTGTGGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (22 bp):
GCACTACGGTGCAATGATACGT
Found at i:132479 original size:21 final size:21
Alignment explanation
Indices: 132454--132520 Score: 134
Period size: 21 Copynumber: 3.2 Consensus size: 21
132444 GTATATGATT
132454 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
132475 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
132496 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
132517 CTTA
1 CTTA
132521 TGGACATTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.28, C:0.10, G:0.27, T:0.34
Consensus pattern (21 bp):
CTTAAGGAATGATATGTGGTC
Found at i:132579 original size:22 final size:22
Alignment explanation
Indices: 132537--132579 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
132527 TTATTATATG
**
132537 GCACTACGGTGCAATTCTACGT
1 GCACTACGGTGCAATGATACGT
*
132559 GCACTTCGGTGCAATGATACG
1 GCACTACGGTGCAATGATACG
132580 AGCTGTGGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (22 bp):
GCACTACGGTGCAATGATACGT
Found at i:136906 original size:14 final size:14
Alignment explanation
Indices: 136887--136913 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
136877 TGGGACCGAG
136887 TTCAATTTCGAGGA
1 TTCAATTTCGAGGA
136901 TTCAATTTCGAGG
1 TTCAATTTCGAGG
136914 GAACACACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (14 bp):
TTCAATTTCGAGGA
Found at i:139806 original size:24 final size:22
Alignment explanation
Indices: 139763--139806 Score: 52
Period size: 24 Copynumber: 1.9 Consensus size: 22
139753 TTTAAGTTAG
*
139763 TATTTTTTTAAAATAGTTATTA
1 TATTTTTTTAAAATAATTATTA
*
139785 TATTTTATATTAATATAATTAT
1 TATTTT-T-TTAAAATAATTAT
139807 ATAAATATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 1 0.06
24 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TATTTTTTTAAAATAATTATTA
Found at i:139850 original size:33 final size:30
Alignment explanation
Indices: 139780--139856 Score: 91
Period size: 30 Copynumber: 2.4 Consensus size: 30
139770 TTAAAATAGT
*
139780 TATTATATTTTATATTAATATAATTATATAAA
1 TATTAT-TTTT-TATTAAAATAATTATATAAA
*
139812 TATTATTTTTTATTAAAATAATATTTATATAA
1 TATTATTTTTTATTAAAATAAT-TATATA-AA
139844 TAATTATTTTTTA
1 T-ATTATTTTTTA
139857 AAATTTATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
30 11 0.28
31 9 0.22
32 9 0.22
33 11 0.28
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (30 bp):
TATTATTTTTTATTAAAATAATTATATAAA
Found at i:139856 original size:18 final size:17
Alignment explanation
Indices: 139803--139856 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 17
139793 ATTAATATAA
139803 TTATATAAATATTATTTT
1 TTATATAAA-ATTATTTT
* *
139821 TTAT-TAAAA-TAATAT
1 TTATATAAAATTATTTT
139836 TTATATAATAATTATTTT
1 TTATATAA-AATTATTTT
139854 TTA
1 TTA
139857 AAATTTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
15 8 0.28
16 4 0.14
17 6 0.21
18 11 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTATATAAAATTATTTT
Found at i:141627 original size:42 final size:42
Alignment explanation
Indices: 141580--141688 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
141570 ACCGATGCCA
* * *
141580 CAGGGGTACATGCCCAGCCCTCCATTTCAGATGCCATCTCCT-
1 CAGGGGTACATGCCAAGCCCACCAGTTCAGATGCCATCT-CTG
* *
141622 CAGGGGTATATGCCAAGCCCACCAGTTCATATGCCATCTCTG
1 CAGGGGTACATGCCAAGCCCACCAGTTCAGATGCCATCTCTG
* * * *
141664 CAGGGTTACATTCCTAGCCCGCCAG
1 CAGGGGTACATGCCAAGCCCACCAG
141689 GTTACATGCC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 2 0.04
42 54 0.96
ACGTcount: A:0.21, C:0.35, G:0.21, T:0.23
Consensus pattern (42 bp):
CAGGGGTACATGCCAAGCCCACCAGTTCAGATGCCATCTCTG
Found at i:141712 original size:21 final size:21
Alignment explanation
Indices: 141663--141712 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
141653 TGCCATCTCT
*
141663 GCAGGGTTACATTCCTAGCCC
1 GCAGGGTTACATGCCTAGCCC
141684 GCCA-GGTTACATGCCTAGCCC
1 G-CAGGGTTACATGCCTAGCCC
141705 GCAGGGTT
1 GCAGGGTT
141713 TTATACCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 22 0.85
22 2 0.08
ACGTcount: A:0.18, C:0.32, G:0.28, T:0.22
Consensus pattern (21 bp):
GCAGGGTTACATGCCTAGCCC
Found at i:142330 original size:33 final size:34
Alignment explanation
Indices: 142234--142339 Score: 160
Period size: 34 Copynumber: 3.1 Consensus size: 34
142224 ATAAATGTTT
*
142234 TTAAAATACAAATTATAGTATTTGAAATTTAACA
1 TTAAAATACAAATTATAGTATTCGAAATTTAACA
* * *
142268 TTAAAATACAAATAATATTATTCGAAATTTAAAA
1 TTAAAATACAAATTATAGTATTCGAAATTTAACA
*
142302 TTAAAATATAAATTATAGT-TTCGAAATTTAACA
1 TTAAAATACAAATTATAGTATTCGAAATTTAACA
142335 TTAAA
1 TTAAA
142340 TTCAACTTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
33 18 0.28
34 46 0.72
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.38
Consensus pattern (34 bp):
TTAAAATACAAATTATAGTATTCGAAATTTAACA
Found at i:142968 original size:127 final size:127
Alignment explanation
Indices: 142742--143524 Score: 1361
Period size: 127 Copynumber: 6.2 Consensus size: 127
142732 ATCTATAGTT
* *
142742 CCCCGGGAACGCGCTTTAAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCCGGGG
1 CCCCGGGAACGCGCCTTCAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCCGGGG
*
142807 GACATAAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
66 GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
* * *
142869 CCCCGGGAACGCGCCTTGAAGTCACCTCAGAAATAATAGGTACTAACATGAATAGTTCCCCGGGG
1 CCCCGGGAACGCGCCTTCAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCCGGGG
*
142934 GACATGAGTGACATAATAGCGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
66 GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
142996 CCCCGGGAACGCGCCTTCAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCC-GGG
1 CCCCGGGAACGCGCCTTCAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCCGGGG
* *
143060 GACATGAGTGACATAATAGGGCAATGATAACATGTTATCTGACAAAATAATGGAAGGCACGC
66 GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
* *
143122 CCCCGGGAACGCGCCTTTAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCTGGGG
1 CCCCGGGAACGCGCCTTCAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCCGGGG
143187 GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
66 GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
* * *
143249 CCCCGGGAACGCGCCTTCAAGTCCCCTCAAAAATAATAGGTACTGACATAAATAGTTCCCTGGGG
1 CCCCGGGAACGCGCCTTCAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCCGGGG
143314 GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
66 GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
* * * * *
143376 CCCCGGGAACGCGCCTTCAAATCCCCTTAGTAATAATAGGTACTGGCATGAATAGTTCCCCGAGG
1 CCCCGGGAACGCGCCTTCAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCCGGGG
*
143441 GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGTGCGC
66 GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
* *
143503 CCCCGTGAACGCGCATTCAAGT
1 CCCCGGGAACGCGCCTTCAAGT
143525 GAATAGTACC
Statistics
Matches: 624, Mismatches: 31, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
126 121 0.19
127 503 0.81
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (127 bp):
CCCCGGGAACGCGCCTTCAAGTCCCCTCAGAAATAATAGGTACTGACATGAATAGTTCCCCGGGG
GACATGAGTGACATAATAGGGCAATGATAACATGTTCTCTGACAAAATAATGGAAGGCGCGC
Found at i:143688 original size:19 final size:19
Alignment explanation
Indices: 143664--143726 Score: 117
Period size: 19 Copynumber: 3.3 Consensus size: 19
143654 AACCGGTCAA
*
143664 GAACCGGCAAAACCGATGT
1 GAACCGGCAAAACCGGTGT
143683 GAACCGGCAAAACCGGTGT
1 GAACCGGCAAAACCGGTGT
143702 GAACCGGCAAAACCGGTGT
1 GAACCGGCAAAACCGGTGT
143721 GAACCG
1 GAACCG
143727 ACCGGTTCAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.33, C:0.27, G:0.30, T:0.10
Consensus pattern (19 bp):
GAACCGGCAAAACCGGTGT
Found at i:143814 original size:6 final size:6
Alignment explanation
Indices: 143803--143847 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
143793 ATTATCGATC
*
143803 AATTTT AATTTT AA-TTT -ATTCTT -ATTTT AAATTT AATTTT AATTT
1 AATTTT AATTTT AATTTT AATT-TT AATTTT AATTTT AATTTT AATTT
143848 AAATCTTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 1 0.03
5 6 0.18
6 27 0.79
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (6 bp):
AATTTT
Found at i:143837 original size:17 final size:16
Alignment explanation
Indices: 143804--143856 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 16
143794 TTATCGATCA
143804 ATTTTAATTTT-AATTT
1 ATTTT-ATTTTAAATTT
143820 ATTCTTATTTTAAATTT
1 ATT-TTATTTTAAATTT
*
143837 AATTTTAATTTAAATCTT
1 -ATTTTATTTTAAAT-TT
143855 AT
1 AT
143857 ACAACCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
16 8 0.25
17 19 0.59
18 5 0.16
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTTATTTTAAATTT
Found at i:152802 original size:20 final size:20
Alignment explanation
Indices: 152765--152806 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
152755 ATTCCACCAC
*
152765 ATGCAACTATATGCTCCTAA
1 ATGCAACTAAATGCTCCTAA
* *
152785 ATGCATCTAAATGGTCCTAA
1 ATGCAACTAAATGCTCCTAA
152805 AT
1 AT
152807 ATACTCTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (20 bp):
ATGCAACTAAATGCTCCTAA
Found at i:155561 original size:6 final size:7
Alignment explanation
Indices: 155540--155655 Score: 71
Period size: 8 Copynumber: 15.9 Consensus size: 7
155530 AATAATTATT
155540 TATATATA
1 TATATA-A
155548 TATATAA
1 TATATAA
155555 TAT-TAA
1 TATATAA
*
155561 TAAATTTAA
1 T--ATATAA
155570 T-T-TAA
1 TATATAA
*
155575 -ATAAAA
1 TATATAA
*
155581 AATAT-A
1 TATATAA
*
155587 TATTTAA
1 TATATAA
155594 TATATATA
1 TATATA-A
155602 TATATATA
1 TATATA-A
155610 TATATATA
1 TATATA-A
155618 TATATATA
1 TATATA-A
155626 TATATATA
1 TATATA-A
155634 TATATATA
1 TATATA-A
155642 TATATATA
1 TATATA-A
155650 TATATA
1 TATATA
155656 CACGGCCCGA
Statistics
Matches: 95, Mismatches: 5, Indels: 16
0.82 0.04 0.14
Matches are distributed among these distances:
5 4 0.04
6 11 0.12
7 13 0.14
8 63 0.66
9 4 0.04
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TATATAA
Found at i:155587 original size:2 final size:2
Alignment explanation
Indices: 155582--155655 Score: 132
Period size: 2 Copynumber: 37.5 Consensus size: 2
155572 TAAATAAAAA
*
155582 AT AT AT AT TT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
155623 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
155656 CACGGCCCGA
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
1 1 0.01
2 68 0.99
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:155697 original size:12 final size:12
Alignment explanation
Indices: 155668--155718 Score: 77
Period size: 12 Copynumber: 4.3 Consensus size: 12
155658 CGGCCCGATT
*
155668 CCCGGCCCAATA
1 CCCGACCCAATA
155680 -CCGACCCAATA
1 CCCGACCCAATA
155691 CCCGACCCAATA
1 CCCGACCCAATA
*
155703 CCCGGCCCAATA
1 CCCGACCCAATA
155715 CCCG
1 CCCG
155719 TTTAAATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
11 10 0.28
12 26 0.72
ACGTcount: A:0.27, C:0.51, G:0.14, T:0.08
Consensus pattern (12 bp):
CCCGACCCAATA
Found at i:155716 original size:24 final size:24
Alignment explanation
Indices: 155653--155718 Score: 80
Period size: 23 Copynumber: 2.8 Consensus size: 24
155643 ATATATATAT
* * * *
155653 ATACACGGCCCGATTCCCGGCCCA
1 ATACCCGGCCCAATACCCGACCCA
*
155677 ATA-CCGACCCAATACCCGACCCA
1 ATACCCGGCCCAATACCCGACCCA
155700 ATACCCGGCCCAATACCCG
1 ATACCCGGCCCAATACCCG
155719 TTTAAATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 18 0.51
24 17 0.49
ACGTcount: A:0.27, C:0.47, G:0.15, T:0.11
Consensus pattern (24 bp):
ATACCCGGCCCAATACCCGACCCA
Found at i:156256 original size:3 final size:3
Alignment explanation
Indices: 156248--156314 Score: 116
Period size: 3 Copynumber: 21.7 Consensus size: 3
156238 TATGTAACAT
156248 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
156296 TAA TAA TATA TAA TTAA TA
1 TAA TAA TA-A TAA -TAA TA
156315 TTTTTAATAT
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
3 56 0.90
4 6 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:157209 original size:29 final size:27
Alignment explanation
Indices: 157156--157261 Score: 113
Period size: 29 Copynumber: 3.7 Consensus size: 27
157146 TAAAACAGCT
* *
157156 AAAACAGAAATTTAATTGACATAAATAGCA
1 AAAACAGAAACTTAAGTGAC-TAAATA--A
*
157186 AAAACAAAAACTTAAGTGACTAAAATAA
1 AAAACAGAAACTTAAGTGACT-AAATAA
157214 AATAACAGAAACTTAAGTGACTAAAATAA
1 AA-AACAGAAACTTAAGTGACT-AAATAA
*
157243 AATAACAGAAACTAAAGTG
1 AA-AACAGAAACTTAAGTG
157262 TCAAAATCAG
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
28 3 0.04
29 44 0.64
30 22 0.32
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (27 bp):
AAAACAGAAACTTAAGTGACTAAATAA
Found at i:158365 original size:40 final size:41
Alignment explanation
Indices: 158315--158501 Score: 148
Period size: 40 Copynumber: 4.4 Consensus size: 41
158305 TTGACACGAC
158315 TCCTACGTGATGAGGA-GATTAGGTCGAGTGATAACACGGT
1 TCCTACGTGATGAGGACGATTAGGTCGAGTGATAACACGGT
* ** * *
158355 TCCTATGTGATGAGGACGACATGTCATCTAGGGGTGATAACACGGT
1 TCCTACGTGATGAGGACG--AT-T-AGGT-CGAGTGATAACACGGT
* * * *
158401 TCCTACGTGATGAGGACGGTT-GGTTATCTGAG-GTTGACACGGC
1 TCCTACGTGATGAGGACGATTAGG---TC-GAGTGATAACACGGT
* * * *
158444 TCCTACGTGATGAGGA-GATCAGGTTGGGTGATGACACGGT
1 TCCTACGTGATGAGGACGATTAGGTCGAGTGATAACACGGT
158484 TCCTACGTGATGAGGACG
1 TCCTACGTGATGAGGACG
158502 GCAGGTCATC
Statistics
Matches: 114, Mismatches: 20, Indels: 25
0.72 0.13 0.16
Matches are distributed among these distances:
39 2 0.02
40 41 0.36
41 2 0.02
42 2 0.02
43 29 0.25
44 5 0.04
45 2 0.02
46 31 0.27
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.26
Consensus pattern (41 bp):
TCCTACGTGATGAGGACGATTAGGTCGAGTGATAACACGGT
Found at i:158490 original size:83 final size:85
Alignment explanation
Indices: 158386--159018 Score: 310
Period size: 83 Copynumber: 7.4 Consensus size: 85
158376 TGTCATCTAG
* ** *
158386 GGGTGATAACACGGTTCCTACGTGATGAGGACGGTTGGTTATCTGAGGT-TGACACGGCTCCTAC
1 GGGTGATGACACGGTTCCTACGTGATGAGGACGGCAGGTTATCTGAGGTATGACACGACTCCTAC
*
158450 GTGATGAGGAGATCAGGT-T
66 GTGATGAGGAGAGCAGGTCT
* * * * * *
158469 GGGTGATGACACGGTTCCTACGTGATGAGGACGGCAGGTCATCTAAGGGTGATAACACTATTCTT
1 GGGTGATGACACGGTTCCTACGTGATGAGGACGGCAGGTTATCTGA-GGT-ATGACACGACTCCT
* *
158534 ACGTGATGAGGACAGCTGGTTATCT
64 ACGTGATGAGGAGAGCAGG---TCT
* * * * * *
158559 GGG-GTTGACACGGCTCCTACGTGACGAGGA-GATCAGG---TC-G-GGTGATGACATGATTCCT
1 GGGTGATGACACGGTTCCTACGTGATGAGGACG-GCAGGTTATCTGAGGT-ATGACACGACTCCT
*
158617 ACGTGATGAGGATG-GCAGACCATCT
64 ACGTGATGAGGA-GAGCAG---GTCT
* * * * *
158642 AAGGGTGATAACATGGTTCCTACGTGATGAGGATGGCTGGTTATCTGAGGT-TGACACGGCTCCT
1 --GGGTGATGACACGGTTCCTACGTGATGAGGACGGCAGGTTATCTGAGGTATGACACGACTCCT
* *
158706 ACGTGATGAGGATATCAGGTC-
64 ACGTGATGAGGAGAGCAGGTCT
* * * * ** * * * *
158727 GGGCGATGACATGGTTCCTACGTGATGAGGATGGCATGCCATCTAAGGGTGATAACAC-AGTTCT
1 GGGTGATGACACGGTTCCTACGTGATGAGGACGGCAGGTTATCTGA-GGT-ATGACACGA-CTCC
*
158791 TACGTGATGAGGATG-GCTGGTTATCT
63 TACGTGATGAGGA-GAGCAGG---TCT
* * * * * * **
158817 ACGGT--TGACACGGCTCCTACATGATGAAGA-GATCAGG---TC-G-GGTGATGACATGGTTCC
1 -GGGTGATGACACGGTTCCTACGTGATGAGGACG-GCAGGTTATCTGAGGT-ATGACACGACTCC
*
158874 TACGTGATGAGGACG-GGAGGTAATCT
63 TACGTGATGAGGA-GAGCAGG---TCT
* * * * *
158900 AAGGGTGATAACACGGTTCCTATGTGATGAGGATGGCTGGTTATCTGGGGT-TGACACGGA-TCC
1 --GGGTGATGACACGGTTCCTACGTGATGAGGACGGCAGGTTATCTGAGGTATGACAC-GACTCC
* * **
158963 TACGTGATGACGATATTAGGTC-
63 TACGTGATGAGGAGAGCAGGTCT
158985 GGGTGATGACACGGTTCCTACGTGATGAGGACGG
1 GGGTGATGACACGGTTCCTACGTGATGAGGACGG
159019 TATACCATCA
Statistics
Matches: 419, Mismatches: 86, Indels: 90
0.70 0.14 0.15
Matches are distributed among these distances:
83 177 0.42
84 10 0.02
85 3 0.01
86 103 0.25
87 2 0.00
88 2 0.00
89 107 0.26
90 7 0.02
91 8 0.02
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (85 bp):
GGGTGATGACACGGTTCCTACGTGATGAGGACGGCAGGTTATCTGAGGTATGACACGACTCCTAC
GTGATGAGGAGAGCAGGTCT
Found at i:158495 original size:129 final size:129
Alignment explanation
Indices: 158304--159018 Score: 1027
Period size: 129 Copynumber: 5.5 Consensus size: 129
158294 TCGTCTAAAT
* * * * *
158304 GTTGACACGACTCCTACGTGATGAGGAGATTAGGTCGAGTGATAACACGGTTCCTATGTGATGAG
1 GTTGACACGGCTCCTACGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGTGATGAG
* * * * *
158369 GACGACATGTCATCTAGGGGTGATAACACGGTTCCTACGTGATGAGGACGGTTGGTTATCTGAG
66 GACGGCAGGTCATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGATGGCTGGTTATCTGAG
*
158433 GTTGACACGGCTCCTACGTGATGAGGAGATCAGGTTGGGTGATGACACGGTTCCTACGTGATGAG
1 GTTGACACGGCTCCTACGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGTGATGAG
** * ** *
158498 GACGGCAGGTCATCTAAGGGTGATAACACTATTCTTACGTGATGAGGACAGCTGGTTATCTGGG
66 GACGGCAGGTCATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGATGGCTGGTTATCTGAG
* * *
158562 GTTGACACGGCTCCTACGTGACGAGGAGATCAGGTCGGGTGATGACATGATTCCTACGTGATGAG
1 GTTGACACGGCTCCTACGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGTGATGAG
* ** *
158627 GATGGCAGACCATCTAAGGGTGATAACATGGTTCCTACGTGATGAGGATGGCTGGTTATCTGAG
66 GACGGCAGGTCATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGATGGCTGGTTATCTGAG
* * *
158691 GTTGACACGGCTCCTACGTGATGAGGATATCAGGTCGGGCGATGACATGGTTCCTACGTGATGAG
1 GTTGACACGGCTCCTACGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGTGATGAG
* * * * *
158756 GATGGCATGCCATCTAAGGGTGATAACACAGTTCTTACGTGATGAGGATGGCTGGTTATCT-ACG
66 GACGGCAGGTCATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGATGGCTGGTTATCTGA-G
* * *
158820 GTTGACACGGCTCCTACATGATGAAGAGATCAGGTCGGGTGATGACATGGTTCCTACGTGATGAG
1 GTTGACACGGCTCCTACGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGTGATGAG
* * * *
158885 GACGGGAGGTAATCTAAGGGTGATAACACGGTTCCTATGTGATGAGGATGGCTGGTTATCTGGG
66 GACGGCAGGTCATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGATGGCTGGTTATCTGAG
* * * *
158949 GTTGACACGGATCCTACGTGATGACGATATTAGGTCGGGTGATGACACGGTTCCTACGTGATGAG
1 GTTGACACGGCTCCTACGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGTGATGAG
159014 GACGG
66 GACGG
159019 TATACCATCA
Statistics
Matches: 527, Mismatches: 57, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
128 1 0.00
129 526 1.00
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (129 bp):
GTTGACACGGCTCCTACGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGTGATGAG
GACGGCAGGTCATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGATGGCTGGTTATCTGAG
Found at i:159167 original size:33 final size:32
Alignment explanation
Indices: 159127--159307 Score: 114
Period size: 33 Copynumber: 5.3 Consensus size: 32
159117 AAGGGGAACG
159127 ATCTCAAAGATATTTGTTGTTTCATGAGAAAC
1 ATCTCAAAGATATTTGTTGTTTCATGAGAAAC
* * * ** *
159159 AATTTCAAATAAAATACGATTTGTTTCAAGAGAAAC
1 -ATCTCAAA-GATATTTG--TTGTTTCATGAGAAAC
* *
159195 ATATCAAAG-TTTGGTTGTTGTTTCATGAGAAAC
1 ATCTCAAAGATAT--TTGTTGTTTCATGAGAAAC
* ** *
159228 GATCTCAAAGAAAATAAGATTTGTTTCAAGAGAAAC
1 -ATCTCAAAG-ATATTTG--TTGTTTCATGAGAAAC
*
159264 ATCTCAAAG-TTTGGTTGTTGTTTCATGAGAAAC
1 ATCTCAAAGATAT--TTGTTGTTTCATGAGAAAC
159297 AATCTCAAAGA
1 -ATCTCAAAGA
159308 AAATAAAACT
Statistics
Matches: 110, Mismatches: 24, Indels: 26
0.69 0.15 0.16
Matches are distributed among these distances:
33 39 0.35
34 22 0.20
35 18 0.16
36 31 0.28
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.33
Consensus pattern (32 bp):
ATCTCAAAGATATTTGTTGTTTCATGAGAAAC
Found at i:159185 original size:36 final size:36
Alignment explanation
Indices: 159143--159264 Score: 101
Period size: 36 Copynumber: 3.5 Consensus size: 36
159133 AAGATATTTG
* * *
159143 TTGTTTCATGAGAAACAATTTCAAATAAAATACGAT
1 TTGTTTCAAGAGAAACAATATCAAATAAAATAAGAT
** *
159179 TTGTTTCAAGAGAAAC-ATATCAAAGT----TTGGTT
1 TTGTTTCAAGAGAAACAATATCAAA-TAAAATAAGAT
* * * *
159211 GTTGTTTCATGAGAAACGATCTCAAAGAAAATAAGAT
1 -TTGTTTCAAGAGAAACAATATCAAATAAAATAAGAT
159248 TTGTTTCAAGAGAAACA
1 TTGTTTCAAGAGAAACA
159265 TCTCAAAGTT
Statistics
Matches: 66, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
32 3 0.05
33 15 0.23
34 7 0.11
35 7 0.11
36 31 0.47
37 3 0.05
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (36 bp):
TTGTTTCAAGAGAAACAATATCAAATAAAATAAGAT
Found at i:159213 original size:69 final size:69
Alignment explanation
Indices: 159140--159348 Score: 337
Period size: 69 Copynumber: 3.0 Consensus size: 69
159130 TCAAAGATAT
* * * *
159140 TTGTTGTTTCATGAGAAACAATTTCAAATAAAATACGATTTGTTTCAAGAGAAACATATCAAAGT
1 TTGTTGTTTCATGAGAAACAATCTCAAAGAAAATAAGATTTGTTTCAAGAGAAACATCTCAAAGT
159205 TTGG
66 TTGG
*
159209 TTGTTGTTTCATGAGAAACGATCTCAAAGAAAATAAGATTTGTTTCAAGAGAAACATCTCAAAGT
1 TTGTTGTTTCATGAGAAACAATCTCAAAGAAAATAAGATTTGTTTCAAGAGAAACATCTCAAAGT
159274 TTGG
66 TTGG
* * *
159278 TTGTTGTTTCATGAGAAACAATCTCAAAGAAAATAAAACTTGTTTCAAGGGAAACATTCTCAAAG
1 TTGTTGTTTCATGAGAAACAATCTCAAAGAAAATAAGATTTGTTTCAAGAGAAACA-TCTCAAAG
159343 TTTGG
65 TTTGG
159348 T
1 T
159349 GTTTCAAGAG
Statistics
Matches: 130, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
69 116 0.89
70 14 0.11
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.33
Consensus pattern (69 bp):
TTGTTGTTTCATGAGAAACAATCTCAAAGAAAATAAGATTTGTTTCAAGAGAAACATCTCAAAGT
TTGG
Found at i:159236 original size:34 final size:33
Alignment explanation
Indices: 159179--159306 Score: 141
Period size: 33 Copynumber: 3.8 Consensus size: 33
159169 AAAATACGAT
*
159179 TTGTTTCAAGAGAAACATATCAAAGTTTGGTTG
1 TTGTTTCAAGAGAAACATCTCAAAGTTTGGTTG
* * ** *
159212 TTGTTTCATGAGAAACGATCTCAAAGAAAATAAGAT-
1 TTGTTTCAAGAGAAAC-ATCTCAAAG---TTTGGTTG
159248 TTGTTTCAAGAGAAACATCTCAAAGTTTGGTTG
1 TTGTTTCAAGAGAAACATCTCAAAGTTTGGTTG
*
159281 TTGTTTCATGAGAAACAATCTCAAAG
1 TTGTTTCAAGAGAAAC-ATCTCAAAG
159307 AAAATAAAAC
Statistics
Matches: 77, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
32 3 0.04
33 30 0.39
34 17 0.22
35 9 0.12
36 15 0.19
37 3 0.04
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (33 bp):
TTGTTTCAAGAGAAACATCTCAAAGTTTGGTTG
Found at i:159332 original size:36 final size:36
Alignment explanation
Indices: 159212--159342 Score: 115
Period size: 36 Copynumber: 3.7 Consensus size: 36
159202 AGTTTGGTTG
* * * *
159212 TTGTTTCATGAGAAACGATCTCAAAGAAAATAAGAT
1 TTGTTTCAAGAGAAACAATCTCAAAGAAAATAAAAC
** *****
159248 TTGTTTCAAGAGAAAC-ATCTCAAAG--TTTGGTTG
1 TTGTTTCAAGAGAAACAATCTCAAAGAAAATAAAAC
*
159281 TTGTTTCATGAGAAACAATCTCAAAGAAAATAAAAC
1 TTGTTTCAAGAGAAACAATCTCAAAGAAAATAAAAC
* *
159317 TTGTTTCAAGGGAAACATTCTCAAAG
1 TTGTTTCAAGAGAAACAATCTCAAAG
159343 TTTGGTGTTT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
33 16 0.22
34 9 0.12
35 9 0.12
36 39 0.53
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (36 bp):
TTGTTTCAAGAGAAACAATCTCAAAGAAAATAAAAC
Found at i:159382 original size:66 final size:67
Alignment explanation
Indices: 159078--159460 Score: 288
Period size: 69 Copynumber: 5.6 Consensus size: 67
159068 AAATGATGCC
* *
159078 TCAAGAGAAACATGTCTCAAAAGAGACAAAA-TTCGTTTCAAGGGGAACGATCTCAAAGATATT-
1 TCAAGAGAAAC-CGTCTC-AAAGAGACAAAACTT-GTTTCAAGGGAAAC-ATCTCAAAG-T-TTG
159141 -TGTTGTT
60 GTGTTGTT
* ** * * * * *
159148 TCATGAGAAACAATTTCAAATA-A-AATACGATTTGTTTCAAGAGAAACATATCAAAGTTTGGTT
1 TCAAGAGAAACCGTCTCAAAGAGACAA-A--ACTTGTTTCAAGGGAAACATCTCAAAGTTTGG-T
159211 GTTGTT
62 GTTGTT
* * * *
159217 TCATGAGAAA-CGATCTCAAAGA-AAATAAGATTTGTTTCAAGAGAAACATCTCAAAGTTTGGTT
1 TCAAGAGAAACCG-TCTCAAAGAGACA-AA-ACTTGTTTCAAGGGAAACATCTCAAAGTTTGG-T
159280 GTTGTT
62 GTTGTT
* ** * *
159286 TCATGAGAAACAATCTCAAAGAAAATAAAACTTGTTTCAAGGGAAACATTCTCAAAGTTT-G-G-
1 TCAAGAGAAACCGTCTCAAAG-AGACAAAACTTGTTTCAAGGGAAACA-TCTCAAAGTTTGGTGT
159348 TGTT
64 TGTT
* * *
159352 TCAAGAGAAACCGTCTCAAGAGAGACAAAACATATTTCAAGGGAAACAATCTCAAA-TGTGG-G-
1 TCAAGAGAAACCGTCTCAA-AGAGACAAAACTTGTTTCAAGGGAAAC-ATCTCAAAGTTTGGTGT
159414 TGTT
64 TGTT
* *
159418 TCAAGGGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGGG
1 TCAAGAGAAACCGTCTCAA-AGAGACAAAACTTGTTTCAAGGG
159461 GAACTGATTC
Statistics
Matches: 266, Mismatches: 30, Indels: 38
0.80 0.09 0.11
Matches are distributed among these distances:
65 2 0.01
66 97 0.36
67 7 0.03
68 12 0.05
69 117 0.44
70 28 0.11
71 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (67 bp):
TCAAGAGAAACCGTCTCAAAGAGACAAAACTTGTTTCAAGGGAAACATCTCAAAGTTTGGTGTTG
TT
Found at i:159473 original size:66 final size:65
Alignment explanation
Indices: 159179--159460 Score: 250
Period size: 66 Copynumber: 4.2 Consensus size: 65
159169 AAAATACGAT
* * * *
159179 TTGTTTCAAGAGAAACATATCAAAGTTTGGTTGTTGTTTCATGAGAAA-CGATCTCAA-AGA-AA
1 TTGTTTCAAGGGAAACATCTCAAAG-TTGG--G-TGTTTCAAGAGAAACCG-TCTCAAGAGAGAC
*
159241 ATAAGAT
61 A-AA-AC
* * ** * *
159248 TTGTTTCAAGAGAAACATCTCAAAGTTTGGTTGTTGTTTCATGAGAAACAATCTCAA-AGAAAAT
1 TTGTTTCAAGGGAAACATCTCAAAG-TTGG--G-TGTTTCAAGAGAAACCGTCTCAAGAG-AGAC
159312 AAAAC
61 AAAAC
*
159317 TTGTTTCAAGGGAAACATTCTCAAAGTTTGGTGTTTCAAGAGAAACCGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGGGAAACA-TCTCAAAGTTGGGTGTTTCAAGAGAAACCGTCTCAAGAGAGACAAAA
159382 C
65 C
* * * *
159383 ATATTTCAAGGGAAACAATCTCAAA-TGTGGGTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAA
1 TTGTTTCAAGGGAAAC-ATCTCAAAGT-TGGGTGTTTCAAGAGAAACCGTCTCAAGAGAGACAAA
159447 AC
64 AC
159449 TTGTTTCAAGGG
1 TTGTTTCAAGGG
159461 GAACTGATTC
Statistics
Matches: 187, Mismatches: 19, Indels: 17
0.84 0.09 0.08
Matches are distributed among these distances:
65 1 0.01
66 94 0.50
67 4 0.02
69 75 0.40
70 11 0.06
71 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.28
Consensus pattern (65 bp):
TTGTTTCAAGGGAAACATCTCAAAGTTGGGTGTTTCAAGAGAAACCGTCTCAAGAGAGACAAAAC
Found at i:159561 original size:36 final size:36
Alignment explanation
Indices: 159528--159751 Score: 234
Period size: 36 Copynumber: 6.4 Consensus size: 36
159518 GAAAAACTGC
* *
159528 CTCAAGGGAGACAAAATTTGTTTCAATGGAAACTAT
1 CTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTAT
*
159564 CTCAAGAGAGACAAAATTTGTTCCAAGGGAAACTAT
1 CTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTAT
* *
159600 CTCAAGAGAGGCAAAATTCG-TTCGAAGGGAAACGT-T
1 CTCAAGAGAGACAAAATTTGTTTC-AAGGGAAAC-TAT
* * * *
159636 TTC-A-A-AG-----TTTATGTTTCAAGAGAAACTGT
1 CTCAAGAGAGACAAAATT-TGTTTCAAGGGAAACTAT
*
159665 CTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTAT
1 CTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTAT
* *
159701 CTCAAGAGTGACAAAATTCGTTTCAAGGGAAACTAT
1 CTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTAT
*
159737 CTCGAGAGAGACAAA
1 CTCAAGAGAGACAAA
159752 TCCTCTGTAT
Statistics
Matches: 155, Mismatches: 20, Indels: 26
0.77 0.10 0.13
Matches are distributed among these distances:
28 3 0.02
29 12 0.08
30 4 0.03
32 2 0.01
33 2 0.01
34 1 0.01
35 3 0.02
36 125 0.81
37 3 0.02
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (36 bp):
CTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTAT
Found at i:159670 original size:137 final size:137
Alignment explanation
Indices: 159487--159751 Score: 440
Period size: 137 Copynumber: 1.9 Consensus size: 137
159477 TTTGTGTTTC
*
159487 AAGGGAAGCGTTTTCAAAGTTTATATTTCAAGAAAAACTGCCTCAAGGGAGACAAAATTTGTTTC
1 AAGGGAAACGTTTTCAAAGTTTATATTTCAAGAAAAACTGCCTCAAGGGAGACAAAATTTGTTTC
* * *
159552 AATGGAAACTATCTCAAGAGAGACAAAATTTGTTCCAAGGGAAACTATCTCAAGAGAGGCAAAAT
66 AAGGGAAACTATCTCAAGAGAGACAAAATTCGTTCCAAGGGAAACTATCTCAAGAGAGACAAAAT
159617 TCGTTCG
131 TCGTTCG
* * *
159624 AAGGGAAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTC
1 AAGGGAAACGTTTTCAAAGTTTATATTTCAAGAAAAACTGCCTCAAGGGAGACAAAATTTGTTTC
* * *
159689 AAGGGAAACTATCTCAAGAGTGACAAAATTCGTTTCAAGGGAAACTATCTCGAGAGAGACAAA
66 AAGGGAAACTATCTCAAGAGAGACAAAATTCGTTCCAAGGGAAACTATCTCAAGAGAGACAAA
159752 TCCTCTGTAT
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
137 118 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (137 bp):
AAGGGAAACGTTTTCAAAGTTTATATTTCAAGAAAAACTGCCTCAAGGGAGACAAAATTTGTTTC
AAGGGAAACTATCTCAAGAGAGACAAAATTCGTTCCAAGGGAAACTATCTCAAGAGAGACAAAAT
TCGTTCG
Found at i:159676 original size:101 final size:101
Alignment explanation
Indices: 159546--159733 Score: 299
Period size: 101 Copynumber: 1.9 Consensus size: 101
159536 AGACAAAATT
*
159546 TGTTTCAATGGAAACTATCTCAAGAGAGACAAAATTTGTTCCAAGGGAAACTATCTCAAGAGAGG
1 TGTTTCAATGGAAACTATCTCAAGAGAGACAAAATTTGTTCCAAGGGAAACTATCTCAAGAGAGA
159611 CAAAATTCG-TTCGAAGGGAAACGTTTTCAAAGTTTA
66 CAAAATTCGTTTC-AAGGGAAACGTTTTCAAAGTTTA
* * * *
159647 TGTTTCAA-GAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATCTCAAGAGTG
1 TGTTTCAATG-GAAACTATCTCAAGAGAGACAAAATTTGTTCCAAGGGAAACTATCTCAAGAGAG
159711 ACAAAATTCGTTTCAAGGGAAAC
65 ACAAAATTCGTTTCAAGGGAAAC
159734 TATCTCGAGA
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
100 1 0.01
101 76 0.95
102 3 0.04
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (101 bp):
TGTTTCAATGGAAACTATCTCAAGAGAGACAAAATTTGTTCCAAGGGAAACTATCTCAAGAGAGA
CAAAATTCGTTTCAAGGGAAACGTTTTCAAAGTTTA
Found at i:160331 original size:117 final size:117
Alignment explanation
Indices: 160174--160395 Score: 399
Period size: 117 Copynumber: 1.9 Consensus size: 117
160164 GCTTGTGAAC
*
160174 ACGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCCTTCATCGTGAAGTTGAGCCTTGAA
1 ACGATATCCTTCGTCGTGAAGTTAAAATCGTGGATGGCCCCTTCATCGTGAAGTTGAGCCTTGAA
*
160239 TTGGATATCCTTCGTCGTAAAGTTGAAATCTAATCTTGAGATAAATGTGGGT
66 TTGGATATCCTTCGTCGTAAAGTTGAAATCCAATCTTGAGATAAATGTGGGT
*
160291 ACGATATCCTTCGTCGTGAAGTTAAAATCGTGGATGGCCCCTTCGTCGTGAAGTTGAGCCTTGAA
1 ACGATATCCTTCGTCGTGAAGTTAAAATCGTGGATGGCCCCTTCATCGTGAAGTTGAGCCTTGAA
* *
160356 TTGGATATCCTTTGTCGTGAAGTTGAAATCCAATCTTGAG
66 TTGGATATCCTTCGTCGTAAAGTTGAAATCCAATCTTGAG
160396 TAAGTTGCTT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
117 100 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (117 bp):
ACGATATCCTTCGTCGTGAAGTTAAAATCGTGGATGGCCCCTTCATCGTGAAGTTGAGCCTTGAA
TTGGATATCCTTCGTCGTAAAGTTGAAATCCAATCTTGAGATAAATGTGGGT
Found at i:160823 original size:32 final size:31
Alignment explanation
Indices: 160748--160835 Score: 95
Period size: 32 Copynumber: 2.7 Consensus size: 31
160738 TTTGCATCAG
* * *
160748 GATGTTAAATCCCCAAAGATGCCCCAATATTC
1 GATGTTAAAT-CTCAAATATGCCCCAACATTC
* *
160780 GATGTTAAATCTCAAAATATGCCTCAACATTT
1 GATGTTAAATCTC-AAATATGCCCCAACATTC
*
160812 GATGTTGAATCTTCAAATATGCCC
1 GATGTTAAATC-TCAAATATGCCC
160836 TCTATTGCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 2 0.04
32 43 0.91
33 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (31 bp):
GATGTTAAATCTCAAATATGCCCCAACATTC
Found at i:161885 original size:22 final size:22
Alignment explanation
Indices: 161851--161900 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
161841 TTCTCGTCCC
*
161851 TTTTTTTGCTTTTTCTT-TTTAT
1 TTTTTTTGATTTTT-TTGTTTAT
* *
161873 TTTTTTTTATTTTTTTGTTTCT
1 TTTTTTTGATTTTTTTGTTTAT
161895 TTTTTT
1 TTTTTT
161901 AATTGGATCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.04, C:0.06, G:0.04, T:0.86
Consensus pattern (22 bp):
TTTTTTTGATTTTTTTGTTTAT
Found at i:161886 original size:23 final size:22
Alignment explanation
Indices: 161851--161900 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
161841 TTCTCGTCCC
* *
161851 TTTTTTTGCTTTTTCTTTTTATT
1 TTTTTTTACTTTTT-TGTTTATT
* *
161874 TTTTTTTATTTTTTTGTTTCTT
1 TTTTTTTACTTTTTTGTTTATT
161896 TTTTT
1 TTTTT
161901 AATTGGATCC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.04, C:0.06, G:0.04, T:0.86
Consensus pattern (22 bp):
TTTTTTTACTTTTTTGTTTATT
Found at i:164175 original size:33 final size:33
Alignment explanation
Indices: 164136--164339 Score: 188
Period size: 33 Copynumber: 6.1 Consensus size: 33
164126 AAAATTCATG
* *
164136 TTCGGGTCAGGTTGGGTTTTTTTAAGTTTGATA
1 TTCGGGTCAGGTCGGGTTTTTTTAAGTGTGATA
**
164169 TTCGGGTTGGGTC-GGTTTTTTTAAGTGTGATA
1 TTCGGGTCAGGTCGGGTTTTTTTAAGTGTGATA
* *
164201 TTCCGGTCGGGGTCGGGTCGGGTCGGTTTTTTAAGTTTGATA
1 -T----TC-GGGTCAGGTCGGGT---TTTTTTAAGTGTGATA
164243 TTCGGGT-AGGGTCGGGTTTTTTTAAGTGTGATA
1 TTCGGGTCA-GGTCGGGTTTTTTTAAGTGTGATA
* *
164276 TTC--G---GGTCGAGATTTTTTAAGTGTGATA
1 TTCGGGTCAGGTCGGGTTTTTTTAAGTGTGATA
*
164304 TTCGGGTCGGGTCGGGTTTTTTTAAGTGTGATA
1 TTCGGGTCAGGTCGGGTTTTTTTAAGTGTGATA
164337 TTC
1 TTC
164340 AGTTCGGGTT
Statistics
Matches: 143, Mismatches: 12, Indels: 32
0.76 0.06 0.17
Matches are distributed among these distances:
28 25 0.17
30 1 0.01
31 1 0.01
32 18 0.13
33 54 0.38
36 12 0.08
37 4 0.03
38 9 0.06
39 3 0.02
41 1 0.01
42 15 0.10
ACGTcount: A:0.14, C:0.09, G:0.34, T:0.44
Consensus pattern (33 bp):
TTCGGGTCAGGTCGGGTTTTTTTAAGTGTGATA
Found at i:164244 original size:42 final size:42
Alignment explanation
Indices: 164170--164259 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 42
164160 AGTTTGATAT
* *
164170 TCGGGTTGGGTCGGTTTTTTTAAGTGTGATATTCCGGTCGGGG
1 TCGGGTCGGGTCGGTTTTTTTAAGTGTGATATTCCGGT-AGGG
* *
164213 TCGGGTCGGGTCGG-TTTTTTAAGTTTGATATTCGGGTAGGG
1 TCGGGTCGGGTCGGTTTTTTTAAGTGTGATATTCCGGTAGGG
164254 TCGGGT
1 TCGGGT
164260 TTTTTTAAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 9 0.21
42 21 0.49
43 13 0.30
ACGTcount: A:0.10, C:0.11, G:0.40, T:0.39
Consensus pattern (42 bp):
TCGGGTCGGGTCGGTTTTTTTAAGTGTGATATTCCGGTAGGG
Found at i:164291 original size:28 final size:28
Alignment explanation
Indices: 164251--164312 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
164241 TATTCGGGTA
* *
164251 GGGTCGGGTTTTTTTAAGTGTGATATTC
1 GGGTCGAGATTTTTTAAGTGTGATATTC
164279 GGGTCGAGATTTTTTAAGTGTGATATTC
1 GGGTCGAGATTTTTTAAGTGTGATATTC
164307 GGGTCG
1 GGGTCG
164313 GGTCGGGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.16, C:0.08, G:0.34, T:0.42
Consensus pattern (28 bp):
GGGTCGAGATTTTTTAAGTGTGATATTC
Found at i:164316 original size:61 final size:59
Alignment explanation
Indices: 164218--164339 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 59
164208 CGGGGTCGGG
*
164218 TCGGGTCGGTTTTTTAAGTTTGATATTCGGGTAGGGTCGGGTTTTTTTAAGTGTGATAT
1 TCGGGTCGGTTTTTTAAGTGTGATATTCGGGTAGGGTCGGGTTTTTTTAAGTGTGATAT
*
164277 TCGGGTCGAGATTTTTTAAGTGTGATATTCGGGTCGGGTCGGGTTTTTTTAAGTGTGATAT
1 TCGGGTCG-G-TTTTTTAAGTGTGATATTCGGGTAGGGTCGGGTTTTTTTAAGTGTGATAT
164338 TC
1 TC
164340 AGTTCGGGTT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
59 8 0.14
60 1 0.02
61 50 0.85
ACGTcount: A:0.16, C:0.08, G:0.32, T:0.44
Consensus pattern (59 bp):
TCGGGTCGGTTTTTTAAGTGTGATATTCGGGTAGGGTCGGGTTTTTTTAAGTGTGATAT
Found at i:166379 original size:2 final size:2
Alignment explanation
Indices: 166372--166405 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
166362 ACAAAGCCCA
166372 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
166406 ACTAACCAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:166636 original size:25 final size:25
Alignment explanation
Indices: 166608--166672 Score: 85
Period size: 27 Copynumber: 2.5 Consensus size: 25
166598 GAATCATTGG
* *
166608 AACCAAAATAAAAGACGCATTGAGC
1 AACCAAAATAAAAGACGCATCGAAC
*
166633 AACCAAGAACAAAGAGACGCATCGAAC
1 AACCAA-AATAAA-AGACGCATCGAAC
166660 AACCAAAATAAAA
1 AACCAAAATAAAA
166673 ACGAATTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 7 0.21
26 10 0.29
27 17 0.50
ACGTcount: A:0.57, C:0.22, G:0.14, T:0.08
Consensus pattern (25 bp):
AACCAAAATAAAAGACGCATCGAAC
Done.