Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001483.1 Hibiscus syriacus cultivar Beakdansim tig00002879_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109499

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5728--5764
16
2.3
16
95
0
65
37
27
27
8
1.84
6943--6994
17
3.0
17
77
5
59
53
3
5
36
1.43
7218--7262
12
3.8
12
84
0
54
31
46
0
22
1.52
13827--13907
21
3.8
21
73
12
58
23
35
23
17
1.95
16129--16172
12
3.6
13
79
14
58
15
0
29
54
1.42
16133--16177
11
4.0
11
88
5
72
15
0
26
57
1.38
16131--16176
23
2.0
24
95
4
85
13
0
28
58
1.35
18369--18518
4
36.8
4
71
14
101
68
8
0
22
1.20
18373--18488
19
5.8
19
72
14
83
67
8
0
23
1.24
18396--18520
27
4.3
27
75
19
126
69
8
0
22
1.14
18373--18521
19
8.2
18
71
20
82
68
8
0
22
1.20
25597--25650
28
1.9
28
100
0
108
40
14
12
31
1.84
28923--29021
20
5.0
20
72
15
62
57
0
1
41
1.05
28937--29011
24
3.3
24
75
14
70
56
0
1
42
1.08
28926--28996
24
3.0
25
78
15
73
59
0
1
39
1.06
28972--29019
19
2.5
20
86
3
62
54
0
0
45
0.99
29506--29535
2
15.0
2
100
0
60
50
0
0
50
1.00
38158--38197
21
1.9
21
89
0
62
25
40
25
10
1.86
42647--42686
17
2.3
18
86
8
64
62
0
0
37
0.95
43850--43908
23
2.7
23
80
19
72
38
0
0
61
0.96
50673--50736
30
2.2
29
88
2
92
35
9
7
46
1.65
52465--52529
32
2.0
32
87
0
94
16
10
16
55
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55918--55943
13
2.0
13
100
0
52
38
15
15
30
1.88
57237--57328
20
4.6
20
73
8
89
34
30
13
21
1.91
57325--57371
20
2.3
20
85
0
67
48
25
10
14
1.76
57548--57619
20
3.6
20
76
0
90
23
16
16
43
1.88
57543--57635
40
2.3
40
92
0
150
23
17
17
41
1.89
57574--57652
20
4.0
20
73
6
79
26
16
13
43
1.86
57682--57732
21
2.5
21
74
3
59
31
27
9
31
1.89
57824--58035
105
2.0
105
93
1
363
27
15
19
37
1.92
58010--58058
20
2.5
20
86
0
71
18
14
22
44
1.85
74723--74777
24
2.3
24
90
0
83
36
40
3
20
1.70
74873--74976
28
3.6
28
73
19
97
43
8
8
39
1.66
75072--75130
30
2.1
27
84
9
73
37
16
6
38
1.76
78855--78892
20
1.9
20
89
10
60
57
0
0
42
0.98
85849--85963
43
2.6
44
81
2
115
10
16
20
52
1.73
87345--87421
37
2.1
37
85
4
102
48
1
3
46
1.28
88959--89227
135
2.0
135
86
0
376
28
27
17
26
1.98
95955--96014
22
2.7
21
71
21
50
71
5
13
10
1.28
95993--96040
19
2.5
19
76
6
53
70
4
4
20
1.21
96123--96149
14
1.9
14
100
0
54
59
0
11
29
1.32
96243--96299
22
2.8
20
80
15
64
66
1
3
28
1.18
98235--98904
105
6.4
105
97
0
1288
22
18
25
34
1.96
99715--99761
12
3.8
13
88
11
64
0
0
12
87
0.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99723--99761
6
6.7
6
97
2
71
0
0
12
87
0.55

Tables:   1

The End!