Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001485.1 Hibiscus syriacus cultivar Beakdansim tig00002881_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68541

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2304--2371
31
2.3
30
82
7
86
38
0
1
60
1.06
4113--4206
21
4.5
21
90
5
129
19
35
25
20
1.96
4719--4815
33
2.9
34
85
3
133
55
4
3
37
1.35
4717--4822
34
3.2
33
82
8
133
54
4
2
37
1.36
5199--6190
127
7.8
128
97
1
1863
32
19
24
22
1.97
5199--6190
382
2.6
383
97
1
1861
32
19
24
22
1.97
6257--6297
8
5.2
8
82
5
57
36
29
0
34
1.58
12657--12690
13
2.6
13
86
13
52
55
0
2
41
1.15
16311--16352
21
2.0
22
86
13
61
47
2
2
47
1.28
23340--23378
17
2.2
17
86
4
51
48
0
15
35
1.45
29208--29238
16
1.9
16
93
0
53
54
9
3
32
1.49
30430--30475
14
3.4
14
85
11
60
65
0
0
34
0.93
31194--31371
20
8.9
20
80
4
171
35
20
20
23
1.96
38315--38345
16
1.9
16
93
0
53
54
12
0
32
1.38
38465--38501
15
2.4
16
78
13
51
64
5
5
24
1.36
39573--39641
30
2.2
30
85
15
95
34
5
17
42
1.73
39582--39641
30
2.0
30
93
6
104
33
6
16
43
1.74
39731--39774
22
2.0
23
86
4
63
20
36
29
13
1.91
39753--39808
15
3.2
18
80
19
82
26
33
28
10
1.90
39754--39807
17
3.2
17
75
19
67
27
31
29
11
1.91
39842--39881
20
2.0
20
100
0
80
15
35
30
20
1.93
39922--39964
21
2.0
21
95
0
77
23
20
27
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39991--40030
20
1.9
22
90
10
66
37
40
10
12
1.77
40245--40314
34
2.1
32
89
5
104
31
15
31
21
1.95
41306--41342
15
2.5
15
90
0
56
70
2
24
2
1.14
43094--43153
29
2.0
30
93
6
104
35
6
15
43
1.72
43243--43305
20
3.0
20
88
4
90
22
34
28
14
1.93
43396--43438
21
2.0
21
95
0
77
23
20
27
27
1.99
43465--43504
20
1.9
22
90
10
66
37
40
10
12
1.77
43719--43788
34
2.1
32
89
5
104
31
15
31
21
1.95
46258--46287
9
3.4
9
90
9
53
46
10
0
43
1.37
46521--46608
39
2.3
39
89
0
131
18
17
23
40
1.90
46541--46624
39
2.2
39
86
4
116
23
14
22
39
1.91
51997--52027
3
10.0
3
93
6
53
32
0
67
0
0.91
52889--52964
23
3.4
23
77
17
97
57
5
0
36
1.21
52900--52969
20
3.3
20
72
18
70
57
5
1
35
1.32
52879--52964
43
2.0
43
97
0
163
55
5
0
38
1.24
58092--58482
194
2.0
193
85
2
525
37
9
12
40
1.76
66278--66336
3
20.0
3
79
10
68
32
1
0
66
1.02
67638--67707
35
2.0
35
100
0
140
45
2
5
45
1.41

Tables:   1

The End!