Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001486.1 Hibiscus syriacus cultivar Beakdansim tig00002889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112789

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6173--6307
68
2.0
68
98
0
261
20
14
37
27
1.91
22450--22491
20
2.1
20
90
0
66
45
11
16
26
1.82
26808--26854
17
2.8
17
80
0
58
53
2
0
44
1.12
28491--28565
3
25.0
3
83
5
89
58
0
1
40
1.06
28704--28995
124
2.4
121
84
6
369
22
17
16
43
1.87
28915--29707
114
7.0
115
85
7
1007
29
18
14
37
1.90
28915--29707
226
3.5
227
85
5
1034
29
18
14
37
1.90
30393--31043
93
7.0
92
87
6
854
34
19
15
30
1.93
30393--31041
187
3.5
183
89
4
912
34
20
15
30
1.93
32037--32069
11
2.9
11
95
4
57
0
12
0
87
0.53
32037--32069
12
2.8
12
90
4
50
0
12
0
87
0.53
38736--38767
15
2.1
15
94
0
55
46
9
18
25
1.79
42565--42611
17
2.8
17
80
0
58
53
2
0
44
1.12
44237--44299
3
21.0
3
83
6
83
60
0
1
38
1.07
45556--45587
2
15.5
2
93
6
55
50
3
0
46
1.17
46648--46803
2
78.0
2
96
0
285
1
0
48
50
1.14
46801--47111
4
78.2
4
98
1
599
24
0
25
50
1.50
56467--56642
87
2.0
87
98
0
343
40
5
7
46
1.56
59645--59678
17
2.0
16
88
11
50
26
0
0
73
0.83
59689--59724
16
2.4
14
83
16
54
41
0
11
47
1.39
59694--59727
16
2.1
16
100
0
68
44
0
11
44
1.40
59791--60121
164
2.0
164
99
0
653
37
13
13
34
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60598--60976
36
11.1
37
68
17
167
30
19
11
38
1.88
60598--60837
101
2.4
102
92
0
392
31
20
11
36
1.88
60786--60974
36
5.4
36
75
13
180
28
19
12
39
1.88
60721--61103
65
5.8
65
76
6
268
30
20
10
38
1.86
60619--60936
166
1.9
167
81
1
379
30
19
11
38
1.87
60702--61068
202
1.8
202
81
4
454
30
19
10
38
1.86
69515--69554
14
2.8
14
88
3
53
52
0
0
47
1.00
70390--70419
3
10.0
3
100
0
60
33
0
0
66
0.92
72157--72332
87
2.0
87
98
0
343
40
5
7
46
1.56
72516--72557
16
2.5
17
84
7
50
40
0
0
59
0.97
75327--75370
16
2.6
16
89
7
61
27
4
0
68
1.09
75377--75406
14
2.1
14
100
0
60
43
0
13
43
1.43
77436--77497
26
2.4
27
89
7
94
77
3
14
4
1.06
78364--78694
164
2.0
164
99
0
653
37
13
13
34
1.85
79172--79552
37
11.1
37
69
17
185
30
19
11
38
1.87
79172--79412
102
2.4
102
93
0
401
31
19
11
36
1.88
79295--79679
65
5.8
64
74
10
236
30
20
10
38
1.86
79361--79550
36
5.4
36
75
12
180
28
19
12
40
1.87
79193--79512
167
1.9
168
81
1
383
30
19
11
38
1.87
79273--79644
203
1.8
204
81
2
462
30
19
10
39
1.85
88062--88101
14
2.8
14
88
3
53
52
0
0
47
1.00
88939--88971
3
11.0
3
100
0
66
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93315--93558
132
1.8
132
80
0
290
46
15
25
13
1.81
93497--93908
45
9.4
44
75
10
258
41
10
31
16
1.82
93508--93908
87
4.6
87
85
6
460
41
10
31
16
1.82
98640--98837
56
3.6
55
87
3
272
27
17
14
40
1.88

Tables:   1

The End!