genome.fa.s1487.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001487.1 Hibiscus syriacus cultivar Beakdansim tig00002890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  234512

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8804--8835	15	2.2	15	94	5	57	40	0	6	53	1.26
10201--10318	3	38.7	3	78	13	116	62	0	0	36	1.01
10442--10852	76	5.5	76	96	2	758	35	21	21	21	1.96
10442--10852	225	1.8	226	96	1	763	35	21	21	21	1.96
11525--11578	22	2.5	22	87	3	83	40	14	11	33	1.82
14120--14674	183	3.0	184	94	0	952	34	22	14	27	1.94
14120--14674	92	6.1	92	95	0	952	34	22	14	27	1.94
17237--17287	2	25.5	2	100	0	102	50	0	0	49	1.00
23715--23823	3	35.7	3	81	7	130	60	0	0	38	1.03
25291--25339	21	2.2	22	79	17	57	36	8	2	53	1.43
34961--35013	15	3.5	15	94	0	97	33	9	26	30	1.88
35730--35797	3	23.0	3	96	3	129	66	0	0	33	0.92
35943--35996	21	2.6	21	93	0	90	29	27	22	20	1.98
36011--36066	21	2.7	19	76	15	58	25	21	21	32	1.98
36801--36872	21	3.4	21	74	14	85	34	25	20	19	1.96
36778--36870	42	2.4	38	83	15	134	36	21	19	22	1.95
37166--37318	58	2.6	57	77	13	152	33	18	7	40	1.79
52759--52881	50	2.4	53	81	9	146	19	32	27	20	1.97
53354--53399	23	2.1	21	84	8	56	21	4	0	73	1.00
56878--56931	10	5.6	10	81	16	60	75	7	1	14	1.09
56879--56939	9	6.4	9	83	14	61	75	8	1	14	1.11
56879--56939	19	3.2	18	86	9	77	75	8	1	14	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60928--61037	54	2.0	54	98	0	211	13	30	20	36	1.91
61887--61998	41	2.7	41	81	13	131	33	20	22	24	1.97
61887--62022	42	3.3	42	82	4	159	31	19	24	25	1.98
65459--65511	21	2.5	21	81	0	61	41	16	39	1	1.60
65831--65928	44	2.2	44	83	0	124	32	22	18	26	1.97
65984--66256	43	6.3	43	74	5	194	32	22	17	27	1.97
65943--66211	129	2.1	129	78	6	269	31	23	17	26	1.97
66258--66294	15	2.7	14	84	15	51	8	24	32	35	1.85
66947--67002	25	2.2	25	100	0	112	48	3	7	41	1.48
70837--70905	20	3.4	20	87	2	93	39	24	15	20	1.92
71436--71497	19	3.1	21	73	15	69	46	19	22	11	1.81
71444--71510	19	3.5	20	74	13	68	49	22	17	10	1.77
71520--71607	33	2.6	33	90	1	140	12	26	21	39	1.89
71572--71632	20	3.1	19	76	17	61	14	24	16	44	1.85
73723--73811	42	2.1	42	82	0	115	21	37	16	24	1.94
75191--75226	14	2.6	14	95	0	63	30	0	25	44	1.54
75333--75409	19	4.3	19	74	15	74	42	20	22	14	1.88
75374--75434	19	3.2	19	80	0	50	32	19	19	27	1.96
75404--75501	19	5.7	19	70	22	99	13	24	18	43	1.85
75410--75501	33	2.8	33	98	0	175	13	23	18	44	1.85
77640--77664	12	2.1	12	100	0	50	0	28	0	72	0.86
77839--77892	24	2.2	24	90	0	81	40	20	16	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78634--78728	20	4.7	20	80	7	102	22	18	26	32	1.97
78655--78749	41	2.3	41	87	3	129	20	20	25	34	1.96
78717--78764	20	2.3	21	82	3	62	18	22	16	41	1.90
85558--85585	7	4.0	7	100	0	56	57	0	0	42	0.99
86323--86364	21	2.1	20	91	8	68	47	2	4	45	1.36
87673--87726	2	27.0	2	100	0	108	50	0	0	50	1.00
89548--89598	19	2.7	19	96	0	93	31	23	19	25	1.98
89626--89668	21	2.0	21	95	0	77	27	30	18	23	1.98
89988--90099	21	5.4	21	77	14	124	25	20	23	31	1.98
94378--94588	110	1.9	112	93	3	354	44	15	18	22	1.87
106187--106241	20	2.9	20	80	15	55	40	3	0	56	1.17
108419--108522	31	3.4	31	72	2	77	43	8	3	44	1.53
108885--108930	22	2.1	22	84	8	58	45	4	0	50	1.21
109632--109671	21	1.9	21	84	0	53	42	27	20	10	1.83
113496--113529	17	2.1	17	88	5	52	14	5	2	76	1.09
120226--120250	12	2.1	12	100	0	50	8	0	0	92	0.40
120961--121015	25	2.1	27	86	6	78	45	12	1	40	1.53
120986--121236	29	8.6	29	84	5	256	49	17	2	31	1.61
121752--121836	21	4.1	21	85	5	104	27	7	8	57	1.53
121752--121836	41	2.1	40	82	8	100	27	7	8	57	1.53
128413--128517	31	3.4	30	71	22	99	40	9	12	38	1.76
128398--128566	63	2.7	63	92	0	275	37	10	15	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128447--128570	32	3.9	32	71	6	108	35	10	17	36	1.84
136510--136585	31	2.5	31	79	8	77	38	13	5	43	1.66
146879--146942	31	2.1	30	83	13	78	53	9	0	37	1.34
146968--147057	32	2.8	31	83	5	117	42	5	6	45	1.53
153953--154004	2	26.0	2	100	0	104	50	0	0	50	1.00
154335--154382	18	2.7	18	87	6	71	52	4	0	43	1.20
168864--168923	31	1.9	31	89	0	93	38	1	5	55	1.32
168865--168931	31	2.2	31	83	5	82	38	1	4	55	1.29
169008--169045	16	2.4	16	95	0	67	13	57	7	21	1.60
175942--175973	15	2.1	15	94	0	55	53	15	6	25	1.65
182711--182755	9	5.0	9	83	0	54	40	46	11	2	1.52
187930--187972	18	2.3	18	84	11	52	53	0	11	34	1.37
188856--188882	3	9.0	3	100	0	54	33	0	0	66	0.92
189721--190013	162	1.8	163	96	0	543	42	1	9	46	1.46
195291--195459	20	8.4	20	74	8	110	39	23	18	18	1.93
195310--195507	81	2.5	80	78	9	215	37	24	18	20	1.94
195352--195504	40	3.8	41	89	3	222	37	24	18	19	1.94
195352--195474	20	6.1	20	82	0	147	37	23	18	20	1.94
195352--195502	60	2.5	61	78	4	162	37	23	18	19	1.94
196064--196139	20	3.8	20	85	5	93	51	18	18	11	1.76
196143--196246	19	5.9	19	66	20	66	16	22	17	44	1.87
196138--196245	53	2.1	52	87	1	153	17	21	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198800--198853	24	2.2	24	93	0	90	40	20	18	20	1.91
198800--198867	24	2.8	24	84	0	64	38	20	17	23	1.93
199707--199919	20	10.9	19	71	17	93	20	19	23	37	1.94
199715--199877	40	4.2	40	83	12	171	19	19	22	39	1.93
199755--199896	74	1.9	75	86	1	205	18	19	23	39	1.92
199713--199896	20	9.4	20	80	8	137	19	19	22	38	1.93
199905--199998	20	4.8	18	76	14	89	13	18	23	44	1.85
199905--199997	40	2.4	38	82	7	105	13	18	23	44	1.86
203293--203344	2	26.0	2	96	0	95	51	0	0	48	1.00
218657--218767	37	3.0	36	81	2	123	49	4	5	40	1.46
226586--226631	24	1.9	24	82	8	58	56	4	6	32	1.45
227570--227621	20	2.7	20	82	8	63	46	3	3	46	1.39

Tables:   1

The End!