genome.fa.s1488.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001488.1 Hibiscus syriacus cultivar Beakdansim tig00002891_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146426

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1174--1219	22	2.1	22	84	8	58	45	4	0	50	1.21
1910--1950	22	1.9	22	85	5	57	41	29	19	9	1.83
1909--1957	22	2.3	21	78	3	53	40	30	20	8	1.81
5753--5788	18	2.1	17	89	5	54	13	5	2	77	1.05
13184--13238	25	2.1	27	86	6	78	45	12	1	40	1.53
13230--13391	56	2.9	56	84	9	206	46	17	3	32	1.65
13209--13455	29	8.6	29	81	8	220	49	17	2	30	1.61
13971--14055	21	4.1	21	85	5	104	27	7	8	57	1.53
13971--14055	41	2.1	40	82	8	100	27	7	8	57	1.53
20781--20885	31	3.4	30	71	22	99	40	9	12	38	1.76
20766--20934	63	2.7	63	92	0	275	37	10	15	36	1.82
20815--20938	32	3.9	32	71	6	108	35	10	17	36	1.84
28730--28809	29	2.7	30	75	11	83	48	10	10	31	1.69
28884--28959	31	2.5	30	79	8	75	38	11	5	44	1.64
28884--28961	29	2.6	31	80	8	81	38	11	5	44	1.63
40935--40998	31	2.1	30	83	13	78	53	9	0	37	1.34
41024--41113	32	2.8	31	81	5	117	41	5	7	45	1.56
41766--41799	16	2.1	16	88	0	50	50	0	2	47	1.16
41841--41874	16	2.0	18	88	11	54	26	2	5	64	1.30
42338--42585	130	1.9	130	90	0	397	35	12	15	36	1.85
42982--43057	35	2.2	35	92	0	125	35	1	23	39	1.63
43833--43908	35	2.2	35	92	0	125	39	23	1	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44305--44552	130	1.9	130	92	0	415	36	14	12	35	1.85
44877--44939	28	2.3	27	78	8	63	46	1	3	49	1.27
45019--45052	16	2.0	18	88	11	54	64	5	2	26	1.30
66249--66308	31	1.9	31	89	0	93	36	1	6	55	1.36
66250--66316	31	2.2	31	83	5	82	37	1	5	55	1.34
66365--66412	16	3.1	16	87	3	53	14	54	6	25	1.63
66375--66412	16	2.4	16	95	0	67	13	57	7	21	1.60
73604--73632	5	5.8	5	100	0	58	41	0	37	20	1.53
79980--80024	9	5.0	9	83	0	54	40	46	11	2	1.52
85182--85224	18	2.3	18	84	11	52	53	0	11	34	1.37
100801--101173	183	2.0	184	91	5	614	42	3	8	46	1.49
101878--101961	41	2.0	41	81	4	98	13	25	32	29	1.93
103411--103441	2	15.5	2	100	0	62	0	48	0	51	1.00
111723--111833	37	3.0	36	81	2	123	49	4	5	40	1.46
119648--119693	24	1.9	24	82	8	58	56	4	6	32	1.45
120633--120684	20	2.7	20	82	8	63	46	3	3	46	1.39
129345--129388	22	2.0	21	86	4	61	13	29	0	56	1.38
129352--129394	21	2.0	22	90	4	70	13	32	2	51	1.54
135989--136191	20	10.1	20	81	8	243	39	23	19	17	1.92
135881--136191	60	5.1	59	78	13	231	39	24	19	16	1.92
135938--136191	40	6.2	40	85	9	227	38	24	19	17	1.93
136279--136321	6	7.2	6	89	0	68	34	34	2	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136279--136327	24	2.0	24	100	0	98	34	36	4	24	1.75
136318--136384	6	11.5	6	98	1	120	31	52	16	0	1.44
136899--136923	6	4.2	6	100	0	50	32	0	32	36	1.58
137003--137200	20	9.8	20	75	17	162	17	19	24	39	1.92
136998--137202	42	5.1	40	78	14	165	16	19	23	40	1.90
137004--137146	42	3.5	42	83	7	170	16	19	24	39	1.92
137663--137703	12	3.6	12	83	6	50	21	2	0	75	0.92
141196--141565	161	2.3	161	86	6	498	41	21	12	23	1.88

Tables:   1

The End!