genome.fa.s1489.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001489.1 Hibiscus syriacus cultivar Beakdansim tig00002894_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93889

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20378--20435	29	1.9	31	82	6	75	41	0	5	53	1.23
23794--23853	29	2.0	29	87	6	84	48	3	3	45	1.35
34776--34808	12	2.9	12	91	8	52	36	0	12	51	1.39
43156--43196	2	20.5	2	100	0	82	51	0	0	48	1.00
43388--43533	38	3.9	36	72	23	99	47	4	5	42	1.45
43387--43640	36	7.1	35	70	18	111	45	4	6	43	1.49
43532--43570	20	1.9	21	84	5	53	46	7	5	41	1.55
43513--43641	31	3.9	31	70	18	100	44	3	6	44	1.49
43690--43728	18	2.2	18	86	9	53	23	15	0	61	1.33
44863--44923	26	2.3	26	83	8	79	26	6	0	67	1.15
48429--49514	106	10.4	106	93	2	1766	34	24	18	22	1.96
48433--49514	423	2.6	424	92	2	1760	34	24	18	22	1.96
50545--50798	38	7.1	36	71	21	146	46	4	6	43	1.49
50675--50743	33	2.1	32	86	7	95	44	5	5	43	1.52
50690--50728	20	1.9	21	84	5	53	46	7	5	41	1.55
50848--50886	18	2.2	18	86	9	53	23	15	0	61	1.33
52016--52076	26	2.3	26	83	8	79	26	6	0	67	1.15
61471--61496	2	13.0	2	100	0	52	50	0	0	50	1.00
66236--66279	2	22.0	2	100	0	88	50	0	0	50	1.00
66679--66727	21	2.2	22	79	17	57	36	8	2	53	1.43
77122--77199	3	25.7	3	97	2	147	66	0	0	33	0.92
77343--77396	21	2.6	21	93	0	90	29	27	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77343--77415	21	3.5	21	88	1	85	30	24	21	23	1.99
77411--77466	21	2.7	19	76	15	58	25	21	21	32	1.98
78196--78267	21	3.4	21	74	14	85	33	23	22	20	1.97
78173--78265	42	2.4	38	83	15	134	35	20	20	23	1.96
78561--78713	58	2.6	58	79	10	161	33	18	7	39	1.80

Tables:   1

The End!