genome.fa.s149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000149.1 Hibiscus syriacus cultivar Beakdansim tig00000265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78741

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2180--2225	23	2.1	23	84	8	60	17	8	17	56	1.65
2280--2351	22	3.3	21	79	9	65	13	11	20	54	1.70
3348--3386	2	19.5	2	100	0	78	48	0	0	51	1.00
4419--4475	21	2.9	19	82	12	80	42	5	1	50	1.35
4795--4832	19	2.1	18	85	14	51	39	5	2	52	1.38
6221--6252	16	2.0	16	93	0	55	37	21	18	21	1.94
8506--8532	14	1.9	14	100	0	54	33	22	14	29	1.94
16018--16076	18	3.2	18	75	13	57	37	18	16	27	1.93
16566--16639	2	36.5	2	84	8	96	48	6	0	44	1.29
28427--28455	8	3.8	8	95	4	51	65	10	10	13	1.47
31300--31371	31	2.3	33	85	7	96	20	8	9	61	1.53
38450--38524	37	2.0	37	89	0	114	40	22	8	29	1.82
38938--38996	31	1.9	31	92	0	100	40	6	10	42	1.65
39021--39063	22	2.0	22	100	0	86	51	13	0	34	1.42
39023--39071	22	2.2	22	88	3	71	55	14	0	30	1.40
39011--39435	54	7.6	55	76	9	414	53	13	0	33	1.40
39191--39233	22	2.0	22	95	0	77	48	13	0	37	1.43
39245--39287	22	2.0	22	95	0	77	51	11	0	37	1.39
39247--39295	22	2.2	22	85	3	62	55	12	0	32	1.37
39012--39691	170	4.0	167	75	14	527	52	13	0	33	1.42
39355--39412	18	3.4	18	70	18	61	56	13	0	29	1.38
39373--39458	14	5.6	14	67	20	55	55	8	0	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39011--39435	224	1.9	224	98	0	814	53	13	0	33	1.40
39163--39637	202	2.4	202	93	4	810	53	12	0	33	1.43
39330--39745	54	7.3	54	79	11	395	52	12	1	34	1.47
39021--39713	224	3.1	223	84	11	804	52	13	0	33	1.44
39617--39659	22	2.0	22	100	0	86	51	13	0	34	1.42
39619--39667	22	2.2	22	88	3	71	55	14	0	30	1.40
39011--39691	202	3.4	201	80	12	755	52	13	0	33	1.42
39671--39713	22	2.0	22	95	0	77	48	13	2	34	1.56
39355--39816	224	2.0	226	90	5	729	52	12	1	33	1.47
39756--39851	22	4.2	22	70	7	84	52	10	0	37	1.36
39796--39943	15	9.5	15	85	10	172	50	2	0	47	1.12
39756--39898	67	2.1	67	85	5	189	49	6	0	43	1.29
41580--41632	20	2.6	21	81	3	72	26	32	20	20	1.98
42157--42201	22	2.1	21	91	4	72	53	2	2	42	1.25
42204--42230	14	1.9	14	100	0	54	59	0	0	40	0.98
53677--54390	216	3.3	214	92	1	1178	50	7	12	29	1.67
54476--54581	2	51.0	2	78	10	106	46	2	3	47	1.35
54481--54598	42	2.9	42	85	8	154	44	3	5	46	1.42
54671--54829	2	81.5	2	64	20	52	46	1	4	47	1.33
54485--54817	22	16.4	20	70	17	163	45	4	5	44	1.47
54720--54760	21	2.0	21	90	9	66	51	0	4	43	1.23
54730--54821	15	6.3	14	69	13	60	46	1	4	47	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54830--54863	7	4.9	7	100	0	68	14	0	41	44	1.45
54830--54870	14	2.9	14	92	0	55	17	0	36	46	1.48
54830--54870	21	2.0	21	90	0	64	17	0	36	46	1.48
54924--55048	20	6.0	20	71	17	85	48	10	4	36	1.56
54959--55048	22	4.2	22	77	11	96	46	10	5	37	1.61
55125--55180	27	2.1	27	93	0	94	39	7	5	48	1.54
55132--55219	27	3.2	26	82	14	79	39	5	6	47	1.54
55175--55438	53	4.8	54	73	20	217	40	9	7	42	1.66
55184--55432	18	13.7	18	67	20	101	40	9	8	41	1.67
55317--55385	33	2.2	33	89	5	106	44	10	5	39	1.62
55411--55458	24	2.0	24	84	8	62	37	8	10	43	1.69
55202--55476	86	3.3	85	76	10	298	41	9	8	41	1.66
55491--55550	27	2.2	27	93	0	102	38	8	3	50	1.49
55486--55563	20	3.5	20	74	19	50	41	7	3	47	1.50
55533--55574	9	4.4	9	78	21	50	45	7	2	45	1.44
55533--55601	34	2.0	36	88	5	106	44	7	4	43	1.51
55618--55688	35	1.9	38	86	11	103	45	5	4	45	1.46
55662--55895	18	13.6	18	71	15	172	46	8	5	40	1.57
55664--55953	51	5.5	51	79	11	298	45	8	6	39	1.61
55662--55953	104	2.8	102	79	9	275	45	8	6	39	1.60
55847--55976	58	2.2	58	93	0	215	43	10	7	38	1.68
55956--56013	17	3.4	17	78	2	53	48	5	1	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56010--56077	22	3.3	20	67	16	50	38	7	7	47	1.60
56539--56772	113	2.1	112	86	5	330	30	28	6	34	1.82
56890--56934	18	2.5	18	77	0	54	42	42	4	11	1.60
57144--57168	2	12.5	2	100	0	50	52	0	0	48	1.00
57177--57397	63	3.5	63	90	1	336	29	12	18	39	1.87
59828--59870	23	1.9	22	90	4	68	27	16	25	30	1.97
60453--60490	17	2.0	20	85	14	55	57	0	2	39	1.12
65201--65281	2	40.5	2	100	0	162	50	0	0	49	1.00
65281--65323	21	2.0	21	90	0	68	20	11	27	39	1.88
68090--68125	16	2.2	17	90	5	56	47	0	2	50	1.15
68878--68962	34	2.5	34	96	3	154	40	0	1	58	1.05
68866--68933	25	3.0	25	77	14	67	42	0	0	57	0.98
72716--72753	19	2.0	19	85	10	51	42	13	0	44	1.43
76931--76970	21	1.9	21	89	0	62	40	20	10	30	1.85
76931--76976	21	2.2	21	84	3	58	43	17	13	26	1.85
76932--76996	20	3.2	20	76	10	53	43	16	10	29	1.82

Tables:   1

The End!