genome.fa.s1490.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001490.1 Hibiscus syriacus cultivar Beakdansim tig00002895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94939

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9634--9673	21	2.0	20	90	9	64	45	5	10	40	1.60
13868--13913	23	1.9	25	86	8	69	34	13	2	50	1.53
17492--17531	21	1.9	21	89	0	62	30	17	7	45	1.76
17526--17624	33	3.0	32	91	4	153	33	7	14	45	1.71
17610--17664	13	4.2	13	75	13	58	34	3	12	49	1.59
17860--17916	21	2.7	21	86	0	87	21	26	24	28	1.99
18231--18262	16	2.0	17	88	11	50	43	21	21	12	1.86
22998--23291	75	4.0	75	88	1	414	26	24	28	20	1.99
26174--26231	21	2.8	21	85	10	75	36	1	1	60	1.17
26187--26248	18	3.2	20	78	15	60	40	1	0	58	1.08
26187--26248	19	3.2	19	78	15	65	40	1	0	58	1.08
27758--27879	62	2.0	62	88	3	183	50	10	9	29	1.67
32554--32592	16	2.4	16	78	0	51	46	17	10	25	1.80
33866--33924	21	2.7	22	76	5	75	22	25	20	32	1.98
33913--33984	20	3.6	20	96	0	135	38	16	19	25	1.92
33973--34020	20	2.4	20	92	0	78	25	29	20	25	1.99
33909--34004	40	2.4	40	82	6	131	35	19	19	25	1.96
34839--34893	24	2.3	24	81	3	76	23	18	18	40	1.91
35086--35118	14	2.5	13	86	13	50	48	24	21	6	1.72
35093--35119	14	1.9	14	100	0	54	44	29	18	7	1.77
37157--37191	18	1.9	18	94	0	61	54	25	2	17	1.57
37251--37516	140	1.9	140	94	0	469	29	12	14	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37491--37688	20	10.8	20	70	20	137	35	22	17	24	1.95
37499--37595	34	2.9	34	95	0	167	37	25	16	20	1.93
37533--37670	54	2.5	55	85	8	201	34	24	18	21	1.96
37491--37688	34	5.4	40	75	15	119	35	22	17	24	1.95
37904--37965	14	4.3	14	77	6	61	46	14	0	38	1.45
39386--39478	42	2.2	42	80	3	107	21	16	40	21	1.91
39964--40008	20	2.4	19	85	7	56	42	24	17	15	1.88
39975--40030	20	2.8	20	86	0	76	37	21	19	21	1.94
40073--40116	20	2.2	20	87	0	61	20	20	22	36	1.95
42013--42108	20	4.8	20	80	2	77	46	20	16	15	1.83
42006--42114	20	5.5	20	82	2	67	47	20	15	16	1.82
42506--42548	22	2.0	22	90	0	68	20	16	39	23	1.92
42731--42835	20	5.2	20	84	2	122	26	20	24	27	1.99
52901--52963	32	1.9	33	96	3	119	31	6	15	46	1.71
53934--53965	16	2.1	15	94	5	55	25	6	15	53	1.65
56181--56214	17	2.1	17	94	5	61	35	0	0	64	0.94
58854--58909	29	1.9	29	85	0	76	21	25	39	14	1.91
59041--59086	14	3.3	14	84	0	65	23	39	28	8	1.84
59100--59144	23	2.0	23	90	0	72	24	26	40	8	1.84
59155--59267	29	3.9	29	91	0	163	22	25	33	18	1.96
63951--63983	15	2.1	16	88	5	50	60	3	3	33	1.27
72531--72599	27	2.7	23	74	20	66	65	4	28	1	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81693--81739	24	1.9	26	83	12	64	68	0	2	29	1.02
81922--81981	27	2.2	27	79	5	68	53	3	3	40	1.34
88971--89018	25	2.0	25	84	12	64	47	0	2	50	1.12
92552--92580	14	2.1	14	100	0	58	13	24	41	20	1.89

Tables:   1

The End!