Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001493.1 Hibiscus syriacus cultivar Beakdansim tig00002908_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70144

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6804--6834
14
2.1
15
94
5
55
22
0
25
51
1.48
8786--8835
11
4.8
11
78
14
61
82
12
0
6
0.85
8786--8834
19
2.5
19
90
6
71
81
12
0
6
0.86
22287--22357
1
71.0
1
77
0
52
0
4
9
85
0.71
22287--22357
11
6.5
11
77
6
81
0
4
9
85
0.71
22297--22339
13
3.4
13
83
6
61
0
6
9
83
0.80
22290--22355
17
3.9
16
79
13
71
0
4
10
84
0.75
23213--23250
15
2.4
16
82
4
51
65
5
15
13
1.43
24139--24176
10
4.0
10
86
13
62
89
10
0
0
0.49
24139--24174
18
2.0
18
100
0
72
88
11
0
0
0.50
26771--26797
9
3.0
9
100
0
54
22
11
11
55
1.66
29765--29832
18
3.4
18
67
21
55
23
11
19
45
1.83
29892--29961
17
4.1
16
83
10
77
38
12
8
40
1.74
31975--32088
35
3.3
35
94
0
201
21
14
12
51
1.74
32194--32268
17
4.4
17
88
5
98
37
13
9
40
1.77
34400--34470
17
4.1
17
80
5
63
38
14
7
40
1.73
39926--40105
96
1.9
96
85
2
254
42
17
11
28
1.84
40810--41106
147
2.0
147
99
0
585
32
14
13
38
1.86
45454--45502
12
4.3
12
75
15
59
51
6
16
26
1.68
45460--45500
21
1.9
22
95
5
75
43
4
19
31
1.72
46076--46487
81
5.1
81
86
2
524
34
11
20
32
1.89
49343--49384
18
2.3
18
100
0
84
28
0
16
54
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51650--51831
96
1.9
95
83
9
237
41
13
21
23
1.89
53626--53691
24
2.8
24
81
2
71
24
18
22
34
1.96
55439--55499
8
7.0
8
77
14
50
81
9
6
1
0.92
55440--55464
9
2.8
9
100
0
50
92
8
0
0
0.40
55440--55481
20
2.1
20
86
8
59
85
9
4
0
0.72
55439--55497
16
3.9
16
81
16
72
81
10
6
1
0.94
55449--55508
20
3.2
19
75
18
63
80
10
8
1
0.99
64499--64546
20
2.4
21
86
6
64
25
31
33
10
1.89
64524--64607
34
2.4
35
88
2
125
22
33
25
19
1.97
64499--64592
20
5.0
19
67
20
63
22
34
26
17
1.96
64720--64761
21
2.0
21
95
0
75
23
21
28
26
1.99
65029--65098
34
2.1
32
81
5
77
32
12
30
24
1.93
68046--68118
18
4.1
18
77
17
73
21
32
30
15
1.94
68046--68153
34
3.0
35
89
8
148
20
34
27
17
1.95
68190--68231
21
2.0
22
90
4
68
21
33
23
21
1.97
68266--68307
21
2.0
21
95
0
75
23
21
28
26
1.99

Tables:   1

The End!