genome.fa.s1494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001494.1 Hibiscus syriacus cultivar Beakdansim tig00002909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56727

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--160	45	3.5	45	87	0	219	39	8	20	31	1.82
3--197	89	2.2	90	82	2	223	38	8	21	30	1.84
1018--1177	80	2.0	81	87	1	232	30	23	11	34	1.91
1510--2041	47	11.2	47	77	13	470	20	21	11	46	1.82
1706--1880	20	7.8	20	70	24	109	20	25	10	44	1.83
1724--2008	27	11.5	27	67	23	162	20	22	10	45	1.82
1822--2041	73	2.9	75	85	6	288	20	21	10	47	1.80
6713--6878	81	2.1	80	88	3	244	30	22	11	35	1.89
7227--7405	47	3.8	47	84	0	223	22	20	12	44	1.85
7373--7426	20	2.7	20	100	0	108	14	31	11	42	1.81
7328--7473	67	2.2	67	87	2	204	21	23	10	43	1.83
7395--7486	47	2.0	47	91	4	150	20	20	9	48	1.77
7884--7934	19	2.7	19	93	0	84	31	29	13	25	1.94
7922--7979	22	2.6	22	97	0	107	32	22	13	31	1.93
11684--11723	2	20.0	2	100	0	80	50	0	0	50	1.00
11783--11949	81	2.1	81	82	2	201	29	24	10	35	1.88
12322--12449	27	5.3	26	61	27	66	19	20	14	46	1.84
12290--12460	94	1.8	94	88	0	261	19	19	14	46	1.84
12290--12461	47	3.7	47	90	0	236	19	20	13	45	1.84
12436--12480	20	2.3	20	88	3	65	17	28	11	42	1.84
12342--12629	113	2.5	114	86	1	416	20	22	13	43	1.87
12456--12830	47	8.0	47	74	10	311	22	20	12	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12551--12602	20	2.6	20	100	0	104	19	30	9	40	1.83
12502--12713	67	3.1	67	81	10	237	21	22	11	44	1.84
12290--12629	160	2.1	160	77	11	356	20	21	13	44	1.86
12589--12693	27	4.1	27	72	16	116	19	20	13	47	1.82
17401--17445	16	2.8	17	83	6	58	31	6	24	37	1.81
17561--18540	83	11.8	83	82	2	1128	33	16	20	29	1.94
17563--18541	249	3.9	249	86	1	1282	33	16	20	29	1.94
20346--20418	24	3.1	24	84	4	94	31	23	21	23	1.98
21906--21968	21	3.0	21	88	0	81	38	26	11	23	1.89
21906--22074	21	7.9	21	70	7	70	37	23	11	27	1.89
22793--22848	20	2.8	21	84	7	64	25	28	17	28	1.98
28877--29040	21	7.7	21	72	5	87	37	23	14	25	1.93
31098--31584	60	8.1	60	85	1	636	27	22	12	37	1.90
32949--33156	65	3.2	63	84	10	251	30	24	18	25	1.98
32947--33182	129	1.8	130	83	8	320	29	24	19	26	1.99
37114--37317	64	3.1	64	81	11	227	32	23	17	26	1.96
38970--39011	21	2.0	21	95	0	75	26	28	21	23	1.99
39126--39181	15	3.5	15	76	21	60	19	25	35	19	1.95
39124--39208	33	2.5	34	92	5	145	17	27	35	20	1.95
39174--39230	20	2.8	20	89	5	89	15	31	33	19	1.93
42202--42271	34	2.1	32	86	5	95	21	31	14	32	1.93
42554--42595	21	2.0	21	95	0	75	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42709--42789	34	2.4	34	82	13	112	23	24	33	18	1.97
42759--42818	20	3.0	20	82	4	77	20	28	31	20	1.97
46110--46151	21	2.0	21	95	0	75	26	28	21	23	1.99
46263--46342	34	2.4	34	83	6	108	20	22	35	22	1.96
46279--46346	35	2.0	35	91	2	111	19	26	32	22	1.97
46312--46367	20	2.8	20	81	5	69	16	32	32	19	1.94
55347--55395	17	2.9	17	90	0	80	0	8	10	81	0.87
55323--55385	26	2.5	26	76	2	65	0	9	11	79	0.94
55323--55395	34	2.1	34	82	5	85	0	8	12	79	0.93
55338--55394	8	6.8	8	82	11	60	0	7	7	85	0.73

Tables:   1

The End!