genome.fa.s1495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001495.1 Hibiscus syriacus cultivar Beakdansim tig00002910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86907

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4051--4112	27	2.3	27	97	0	115	53	30	12	3	1.55
4559--4620	21	3.0	21	83	2	72	54	17	3	24	1.57
5901--5939	16	2.5	16	91	4	62	17	35	12	33	1.88
6434--6475	22	2.0	21	85	4	57	57	2	0	40	1.12
7440--7579	68	2.0	69	87	6	205	42	4	36	16	1.68
7620--7724	39	2.6	40	79	10	115	35	19	16	29	1.93
8672--8744	3	24.3	3	100	0	146	32	0	0	67	0.91
12114--12160	23	2.1	23	84	7	62	48	0	2	48	1.13
12114--12176	23	2.8	22	77	13	58	46	0	4	49	1.23
12350--12404	23	2.4	22	79	8	56	47	0	1	50	1.11
12961--13096	69	2.0	69	89	5	213	44	4	36	14	1.65
13133--13524	41	9.6	41	70	8	176	34	18	14	32	1.91
14187--14225	3	13.3	3	94	5	71	30	0	0	69	0.89
19990--20057	26	2.6	27	88	2	93	54	27	11	5	1.60
20202--20285	44	1.9	44	87	0	123	29	17	20	32	1.96
20501--20553	21	2.5	21	84	0	70	50	20	5	22	1.69
22556--22618	23	2.8	21	81	13	72	46	0	3	50	1.17
22831--22873	23	1.9	23	85	4	61	44	0	2	53	1.13
23404--23541	70	2.0	69	90	7	217	43	5	34	15	1.71
23579--23718	41	3.4	41	80	0	154	35	18	16	30	1.93
23821--23972	41	3.7	40	68	11	103	35	15	14	34	1.88
24647--24674	3	9.3	3	100	0	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28790--28836	23	2.1	23	84	7	62	48	0	2	48	1.13
28790--28852	23	2.8	22	77	13	58	46	0	4	49	1.23
29642--29782	69	2.0	68	89	8	214	43	4	35	15	1.68
29819--29958	41	3.4	41	80	0	163	34	20	16	29	1.94
29823--29991	82	2.0	82	80	5	189	34	18	15	30	1.92
30059--30202	41	3.5	42	78	8	120	34	18	14	31	1.91
30851--30889	3	13.3	3	89	5	62	28	0	0	71	0.86
33422--33458	17	2.2	17	100	0	74	43	10	18	27	1.83
34993--35039	23	2.1	23	84	7	62	48	0	2	48	1.13
34993--35055	23	2.8	22	77	13	58	46	0	4	49	1.23
35247--35271	13	1.9	13	100	0	50	40	4	0	56	1.18
35263--35313	23	2.2	24	85	3	68	43	0	1	54	1.11
35840--35980	70	2.0	68	88	8	205	43	4	36	15	1.69
36017--36156	41	3.4	41	80	0	163	34	20	16	29	1.94
36021--36189	82	2.0	82	80	5	189	34	18	15	30	1.92
36254--36396	41	3.5	40	80	5	128	33	18	15	32	1.92
37046--37105	3	20.3	3	96	3	113	31	0	0	68	0.90
44511--44563	21	2.5	21	84	0	70	50	20	5	22	1.69
46608--46654	23	2.1	23	84	7	62	51	0	2	46	1.13
47637--47863	41	5.6	41	80	2	233	35	17	15	30	1.92
47637--47865	123	1.9	122	83	2	298	35	17	15	31	1.91
47637--47863	82	2.8	82	81	3	260	35	17	15	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48541--48583	3	14.3	3	100	0	86	32	0	0	67	0.91
58926--58972	23	2.1	23	84	7	62	48	0	2	48	1.13
58926--58988	23	2.8	22	77	13	58	46	0	4	49	1.23
59776--59916	69	2.0	68	89	8	214	43	4	35	15	1.68
59937--60074	41	3.3	41	83	2	159	35	18	15	29	1.93
60192--60335	41	3.5	42	76	8	111	35	18	14	31	1.91
60952--60993	3	14.3	3	95	5	77	30	0	0	69	0.89
70690--70772	44	1.9	43	82	7	105	27	19	19	33	1.96
70910--70950	15	2.8	15	92	3	66	43	12	0	43	1.41
71003--71052	21	2.4	21	89	0	73	50	24	6	20	1.70
72347--72376	16	1.9	15	93	6	51	76	0	16	6	0.99
73887--74024	67	2.0	68	90	6	219	43	5	35	15	1.70
74061--74154	41	2.3	40	87	1	134	39	20	14	25	1.91
80228--80265	20	1.9	20	89	10	60	28	5	13	52	1.61
82861--82936	31	2.4	31	77	2	80	15	26	30	27	1.96
86392--86436	21	2.2	20	84	4	54	33	17	13	35	1.89

Tables:   1

The End!