Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001498.1 Hibiscus syriacus cultivar Beakdansim tig00002923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132042
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:12605 original size:17 final size:17
Alignment explanation
Indices: 12583--12615 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
12573 TAAGATTTGA
12583 TTTAATAAATGAACTAG
1 TTTAATAAATGAACTAG
*
12600 TTTAATTAATGAACTA
1 TTTAATAAATGAACTA
12616 TTTCCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (17 bp):
TTTAATAAATGAACTAG
Found at i:15163 original size:33 final size:33
Alignment explanation
Indices: 15121--15189 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
15111 GTTGATGAAT
*
15121 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
15154 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
15187 GAA
1 GAA
15190 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:19215 original size:12 final size:13
Alignment explanation
Indices: 19198--19227 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
19188 GTTGTAGGAG
19198 TCTTTTCTTTTC-
1 TCTTTTCTTTTCT
19210 TCTTTTCTTTTCT
1 TCTTTTCTTTTCT
19223 TCTTT
1 TCTTT
19228 CTTGTTGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TCTTTTCTTTTCT
Found at i:19624 original size:33 final size:33
Alignment explanation
Indices: 19582--19650 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
19572 GTTGATGAAT
*
19582 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
19615 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
19648 GAA
1 GAA
19651 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:24430 original size:6 final size:6
Alignment explanation
Indices: 24419--24458 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
24409 TTGATAGGAA
24419 TCTTTT TCTTTT TC--TT T-TTTT TCTTCTT TCTTTT TCTTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTT-TT TCTTTT TCTTTT
24459 CTTGCAGCAC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
4 3 0.10
5 3 0.10
6 18 0.60
7 6 0.20
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (6 bp):
TCTTTT
Found at i:24439 original size:15 final size:16
Alignment explanation
Indices: 24421--24453 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
24411 GATAGGAATC
24421 TTTTTCTT-TTTCTTT
1 TTTTTCTTCTTTCTTT
24436 TTTTTCTTCTTTCTTT
1 TTTTTCTTCTTTCTTT
24452 TT
1 TT
24454 CTTTTCTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTCTTCTTTCTTT
Found at i:24447 original size:18 final size:18
Alignment explanation
Indices: 24422--24461 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 18
24412 ATAGGAATCT
24422 TTTTCTT-TTTC-TTTT-
1 TTTTCTTCTTTCTTTTTC
24437 TTTTCTTCTTTCTTTTTC
1 TTTTCTTCTTTCTTTTTC
24455 TTTTCTT
1 TTTTCTT
24462 GCAGCACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.32
16 4 0.18
17 4 0.18
18 7 0.32
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTCTTCTTTCTTTTTC
Found at i:24665 original size:20 final size:20
Alignment explanation
Indices: 24640--24709 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 20
24630 GAAATGATTA
24640 AAATGGAAATATGAAACAAG
1 AAATGGAAATATGAAACAAG
* *
24660 AAATGGAAGA-AAGAAATGATTA-
1 AAATGGAA-ATATGAAA-CA--AG
*
24682 AAATGGAAATATGAAATAAG
1 AAATGGAAATATGAAACAAG
24702 AAATGGAA
1 AAATGGAA
24710 GAAAGAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 1 0.03
20 21 0.52
21 4 0.10
22 13 0.32
23 1 0.03
ACGTcount: A:0.60, C:0.01, G:0.21, T:0.17
Consensus pattern (20 bp):
AAATGGAAATATGAAACAAG
Found at i:24683 original size:42 final size:42
Alignment explanation
Indices: 24624--24720 Score: 185
Period size: 42 Copynumber: 2.3 Consensus size: 42
24614 CAAAATTAAA
24624 AAGAAAGAAATGATTAAAATGGAAATATGAAACAAGAAATGG
1 AAGAAAGAAATGATTAAAATGGAAATATGAAACAAGAAATGG
*
24666 AAGAAAGAAATGATTAAAATGGAAATATGAAATAAGAAATGG
1 AAGAAAGAAATGATTAAAATGGAAATATGAAACAAGAAATGG
24708 AAGAAAGAAATGA
1 AAGAAAGAAATGA
24721 AATTATAAGA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.61, C:0.01, G:0.22, T:0.16
Consensus pattern (42 bp):
AAGAAAGAAATGATTAAAATGGAAATATGAAACAAGAAATGG
Found at i:26843 original size:6 final size:6
Alignment explanation
Indices: 26827--26856 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
26817 ACTCAAGAAG
26827 AAAAG- AAAAGA AAAAGA AAAAGA AAAAGA A
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA A
26857 TATTACAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:31568 original size:30 final size:31
Alignment explanation
Indices: 31533--31592 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
31523 CTTAGCTTTA
**
31533 TATTATGCTTACATATGTTTTAGAT-TCATT
1 TATTATGCTTACATATCATTTAGATATCATT
* *
31563 TATTATGTTTGCATATCATTTAGATATCAT
1 TATTATGCTTACATATCATTTAGATATCAT
31593 GGCAGCATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.52
Consensus pattern (31 bp):
TATTATGCTTACATATCATTTAGATATCATT
Found at i:33245 original size:5 final size:5
Alignment explanation
Indices: 33235--33292 Score: 50
Period size: 5 Copynumber: 11.6 Consensus size: 5
33225 TTGGAGTGCA
* *
33235 AAAAG AAAAG AAAAAA AAAAG AAAAG --AAG AATCAG AAAA- AAAAG AAAAG
1 AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG AA-AAG AAAAG AAAAG AAAAG
33284 AAAAAG AAA
1 -AAAAG AAA
33293 TTCAAAAGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
3 3 0.07
4 4 0.09
5 23 0.53
6 13 0.30
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:35735 original size:30 final size:31
Alignment explanation
Indices: 35701--35760 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
35691 CTTAGCTTTA
**
35701 TATTATGCTTT-CATATGTTTTAGAT-TCATT
1 TATTATG-TTTGCATATCATTTAGATATCATT
35731 TATTATGTTTGCATATCATTTAGATATCAT
1 TATTATGTTTGCATATCATTTAGATATCAT
35761 GGCAGCATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 19 0.73
31 4 0.15
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (31 bp):
TATTATGTTTGCATATCATTTAGATATCATT
Found at i:36682 original size:19 final size:20
Alignment explanation
Indices: 36658--36708 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
36648 CGGCCAAGAG
* *
36658 CATGTATCTTCAT-TAAAAT
1 CATGTATTTTCATCAAAAAT
36677 CATGTATTTTCATCAAAAAT
1 CATGTATTTTCATCAAAAAT
36697 CATGTATTTTCA
1 CATGTATTTTCA
36709 AAAGGGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (20 bp):
CATGTATTTTCATCAAAAAT
Found at i:39481 original size:9 final size:8
Alignment explanation
Indices: 39463--39497 Score: 61
Period size: 8 Copynumber: 4.2 Consensus size: 8
39453 GTATTTCTTC
39463 TTTCTTTT
1 TTTCTTTT
39471 TTTCTTTT
1 TTTCTTTT
39479 TTTCTTTTT
1 TTTC-TTTT
39488 TTTCTTTT
1 TTTCTTTT
39496 TT
1 TT
39498 CTTGTTGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTCTTTT
Found at i:39484 original size:16 final size:17
Alignment explanation
Indices: 39463--39497 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
39453 GTATTTCTTC
39463 TTTC-TTTTTTTCTTTT
1 TTTCTTTTTTTTCTTTT
39479 TTTCTTTTTTTTCTTTT
1 TTTCTTTTTTTTCTTTT
39496 TT
1 TT
39498 CTTGTTGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (17 bp):
TTTCTTTTTTTTCTTTT
Found at i:39492 original size:29 final size:30
Alignment explanation
Indices: 39437--39494 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
39427 TGTAGGAGTT
*
39437 TTTTCTTTCTCTTTTTGTATTTCTTCTTTC
1 TTTTCTTTCTCTTTTTCTATTTCTTCTTTC
* * *
39467 TTTT-TTTCTTTTTTTCTTTTTTTTCTTT
1 TTTTCTTTCTCTTTTTCTATTTCTTCTTT
39495 TTTCTTGTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.81
Consensus pattern (30 bp):
TTTTCTTTCTCTTTTTCTATTTCTTCTTTC
Found at i:39498 original size:16 final size:16
Alignment explanation
Indices: 39456--39500 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
39446 TCTTTTTGTA
*
39456 TTTCTTCTTTC-TTTT
1 TTTCTTTTTTCTTTTT
39471 TTTCTTTTTTTCTTTTT
1 TTTC-TTTTTTCTTTTT
39488 TTTCTTTTTTCTT
1 TTTCTTTTTTCTT
39501 GTTGCTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 4 0.15
16 15 0.56
17 8 0.30
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTCTTTTTTCTTTTT
Found at i:39694 original size:15 final size:17
Alignment explanation
Indices: 39667--39699 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
39657 ATATGAAAAA
39667 ATTAAAGAAAGAA-ATG
1 ATTAAAGAAAGAATATG
39683 ATTAAA-AAAGAATATG
1 ATTAAAGAAAGAATATG
39699 A
1 A
39700 AAGAAGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.64, C:0.00, G:0.15, T:0.21
Consensus pattern (17 bp):
ATTAAAGAAAGAATATG
Found at i:39739 original size:16 final size:16
Alignment explanation
Indices: 39677--39731 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
39667 ATTAAAGAAA
39677 GAAATGATTAA-AAAA-
1 GAAATGA-TAAGAAAAG
39692 GAATATGA-AAGAAGAATG
1 GAA-ATGATAAGAA-AA-G
39710 GAAATGATAAGAAAAG
1 GAAATGATAAGAAAAG
39726 GAAATG
1 GAAATG
39732 GATAGAAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
14 2 0.06
15 5 0.15
16 13 0.38
17 6 0.18
18 8 0.24
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (16 bp):
GAAATGATAAGAAAAG
Found at i:41097 original size:22 final size:22
Alignment explanation
Indices: 41057--41098 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
41047 AAATATGTGG
*
41057 TTCATAATAATAACTTCATACA
1 TTCATAATAATAACATCATACA
* *
41079 TTCATAATATTATCATCATA
1 TTCATAATAATAACATCATA
41099 ACTATAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (22 bp):
TTCATAATAATAACATCATACA
Found at i:43239 original size:59 final size:59
Alignment explanation
Indices: 43170--43557 Score: 453
Period size: 59 Copynumber: 6.6 Consensus size: 59
43160 ACCAAATGGT
* * *
43170 ACTATATGTGCTAAAATGATAAGAAAATCATACTGAATGTATGAATTTCCATAAGGAGC
1 ACTATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATAAGGAGC
*
43229 ACTGA-GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATA-GAGC
1 ACT-ATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATA-AGGAGC
* * * *
43288 ACTATATGTGCCAAAATGATAAGTAAATTATACTGAGTGTATGGATTTCCATATGGAGC
1 ACTATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATAAGGAGC
* *
43347 ACTATATGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATATGGAGC
1 ACTATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATAAGGAGC
* * * * * *
43406 ACTGA-GTGTGCTAAAATGATAAAGAAATCATATTGAATATATGGATTTCCAGATAGG-GC
1 ACT-ATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATA-AGGAGC
* * ** * **
43465 ATTATATGTGCTAAAATGGTAAGGGGATCATACTGAGTGTATGGATTTCCAGAAAAAGC
1 ACTATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATAAGGAGC
* * * *
43524 ACTA-AGGGTACTACAAGGATAAGGAAATCATACT
1 ACTATA-TGTGCTAAAATGATAAGGAAATCATACT
43558 AACAATATGG
Statistics
Matches: 282, Mismatches: 38, Indels: 18
0.83 0.11 0.05
Matches are distributed among these distances:
58 4 0.01
59 273 0.97
60 5 0.02
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (59 bp):
ACTATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATAAGGAGC
Found at i:43357 original size:118 final size:117
Alignment explanation
Indices: 43170--43817 Score: 488
Period size: 118 Copynumber: 5.5 Consensus size: 117
43160 ACCAAATGGT
* *
43170 ACTATATGTGCTAAAATGATAAGAAAATCATACTGAATGTATGAATTTCCATAAGGAGCACTGA-
1 ACTATATGTGCTAAAATGATAAG-AAATCATACTGAATGTATGGATTTCCATATGGAGCACT-AT
*
43234 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGC
64 ATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGC
* * *
43288 ACTATATGTGCCAAAATGATAAGTAAATTATACTGAGTGTATGGATTTCCATATGGAGCACTATA
1 ACTATATGTGCTAAAATGATAAG-AAATCATACTGAATGTATGGATTTCCATATGGAGCACTATA
* *
43353 TGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATATGGAGC
65 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGC
* * * * *
43406 ACTGA-GTGTGCTAAAATGATAAAGAAATCATATTGAATATATGGATTTCCAGATAGG-GCATTA
1 ACT-ATATGTGCTAAAATGAT-AAGAAATCATACTGAATGTATGGATTTCCATAT-GGAGCACTA
* ** * * *
43469 TATGTGCTAAAATGGTAAGGGGATCATACTGAGTGTATGGATTTCCAGAAAAAGC
63 TATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGC
* * * * ** *
43524 ACTA-AGGGTACTACAAGGATAAGGAAATCATACT-AACAATATGGATTTTCATATAGG-GCACT
1 ACTATA-TGTGCTAAAATGATAA-GAAATCATACTGAA-TGTATGGATTTCCATAT-GGAGCACT
* * * * * * * *
43586 -TCACGTGCTAAAAATGGTAA-AAAGATCATACT-ACTGGTATGGATTCTCGA-ATCGGGA
62 AT-ATGTGCT-AAAATGATAAGGAA-ATCATACTGAGT-GTATGGATT-TCCATATAGAGC
* * *
43643 ACT-TCATGTGCTAAAAATGGTAAAGGAATCATACT-AATGGTATGGATTCTCGA-ATAGG-GCA
1 ACTAT-ATGTGCT-AAAATGAT-AAGAAATCATACTGAAT-GTATGGATT-TCCATAT-GGAGCA
* * * * * *
43704 CT-TCGTGTGCTAAAATGAGAAGGAAATCATATTAAGTATAT-GATATTCCAGATAGAGC
60 CTAT-ATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGAT-TTCCATATAGAGC
* * * * **
43762 ACTGAGA-GTGCTAATATTATAAGGAAATTATAC-GAATTGTATAAATTTCC-TATGGA
1 ACT-ATATGTGCTAAAATGATAA-GAAATCATACTGAA-TGTATGGATTTCCATATGGA
43818 ATGTATGGAT
Statistics
Matches: 424, Mismatches: 77, Indels: 59
0.76 0.14 0.11
Matches are distributed among these distances:
116 2 0.00
117 13 0.03
118 280 0.66
119 74 0.17
120 51 0.12
121 4 0.01
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (117 bp):
ACTATATGTGCTAAAATGATAAGAAATCATACTGAATGTATGGATTTCCATATGGAGCACTATAT
GTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGC
Found at i:43473 original size:177 final size:177
Alignment explanation
Indices: 43170--43515 Score: 530
Period size: 177 Copynumber: 2.0 Consensus size: 177
43160 ACCAAATGGT
43170 ACTATATGTGCTAAAATGATAAGAAAATCATACTGAATGTATGAATTTCCATAAGGAGCACTGAG
1 ACTATATGTGCTAAAATGATAAGAAAATCATACTGAATGTATGAATTTCCATAAGGAGCACTGAG
* * * *
43235 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGCACTATATGTGCC
66 TGTGCTAAAATGATAAAGAAATCATACTGAATATATGGATTTCCAGATAGAGCACTATATGTGCC
* *
43300 AAAATGATAAGTAAATTATACTGAGTGTATGGATTTCCATATGGAGC
131 AAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGC
* * * * *
43347 ACTATATGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATATGGAGCACTGAG
1 ACTATATGTGCTAAAATGATAAGAAAATCATACTGAATGTATGAATTTCCATAAGGAGCACTGAG
* * * *
43412 TGTGCTAAAATGATAAAGAAATCATATTGAATATATGGATTTCCAGATAGGGCATTATATGTGCT
66 TGTGCTAAAATGATAAAGAAATCATACTGAATATATGGATTTCCAGATAGAGCACTATATGTGCC
* **
43477 AAAATGGTAAGGGGATCATACTGAGTGTATGGATTTCCA
131 AAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCA
43516 GAAAAAGCAC
Statistics
Matches: 151, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
177 151 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.31
Consensus pattern (177 bp):
ACTATATGTGCTAAAATGATAAGAAAATCATACTGAATGTATGAATTTCCATAAGGAGCACTGAG
TGTGCTAAAATGATAAAGAAATCATACTGAATATATGGATTTCCAGATAGAGCACTATATGTGCC
AAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGC
Found at i:43527 original size:177 final size:177
Alignment explanation
Indices: 43170--43557 Score: 526
Period size: 177 Copynumber: 2.2 Consensus size: 177
43160 ACCAAATGGT
*
43170 ACTATATGTGCTAAAATGATAAGAAAATCATACTGAATGTATGAATTTCCATAAGGAGCACTGAG
1 ACTATATGTGCTAAAATGATAAGGAAATCATACTGAATGTATGAATTTCCATAAGGAGCACTGAG
* * * *
43235 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGCACTATATGTGCC
66 TGTGCTAAAATGATAAAGAAATCATACTGAATATATGGATTTCCAGATAGAGCACTATATGTGCC
* * * ***
43300 AAAATGATAAGTAAATTATACTGAGTGTATGGATTTCCATATGGAGC
131 AAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAGAAAAAGC
* * * *
43347 ACTATATGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATATGGAGCACTGAG
1 ACTATATGTGCTAAAATGATAAGGAAATCATACTGAATGTATGAATTTCCATAAGGAGCACTGAG
* * * *
43412 TGTGCTAAAATGATAAAGAAATCATATTGAATATATGGATTTCCAGATAGGGCATTATATGTGCT
66 TGTGCTAAAATGATAAAGAAATCATACTGAATATATGGATTTCCAGATAGAGCACTATATGTGCC
* **
43477 AAAATGGTAAGGGGATCATACTGAGTGTATGGATTTCCAGAAAAAGC
131 AAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAGAAAAAGC
* * * *
43524 ACTA-AGGGTACTACAAGGATAAGGAAATCATACT
1 ACTATA-TGTGCTAAAATGATAAGGAAATCATACT
43558 AACAATATGG
Statistics
Matches: 183, Mismatches: 27, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
176 1 0.01
177 182 0.99
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (177 bp):
ACTATATGTGCTAAAATGATAAGGAAATCATACTGAATGTATGAATTTCCATAAGGAGCACTGAG
TGTGCTAAAATGATAAAGAAATCATACTGAATATATGGATTTCCAGATAGAGCACTATATGTGCC
AAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAGAAAAAGC
Found at i:43627 original size:60 final size:60
Alignment explanation
Indices: 43549--43718 Score: 218
Period size: 60 Copynumber: 2.8 Consensus size: 60
43539 AGGATAAGGA
*** * *
43549 AATCATACTAACAATATGGATTTTC-ATATAGGGCACTTCACGTGCTAAAAATGGTAAAA-
1 AATCATACTAATGGTATGGATTCTCGA-ATAGGGCACTTCATGTGCTAAAAATGGTAAAAG
* * * *
43608 AGATCATACTACTGGTATGGATTCTCGAATCGGGAACTTCATGTGCTAAAAATGGTAAAGG
1 A-ATCATACTAATGGTATGGATTCTCGAATAGGGCACTTCATGTGCTAAAAATGGTAAAAG
*
43669 AATCATACTAATGGTATGGATTCTCGAATAGGGCACTTCGTGTGCTAAAA
1 AATCATACTAATGGTATGGATTCTCGAATAGGGCACTTCATGTGCTAAAA
43719 TGAGAAGGAA
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
59 1 0.01
60 92 0.97
61 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (60 bp):
AATCATACTAATGGTATGGATTCTCGAATAGGGCACTTCATGTGCTAAAAATGGTAAAAG
Found at i:43764 original size:59 final size:59
Alignment explanation
Indices: 43175--43803 Score: 433
Period size: 59 Copynumber: 10.6 Consensus size: 59
43165 ATGGTACTAT
* * * *
43175 ATGTGCTAAAATGATAAGAAAATCATACTGAA-TGTATGAATTTCCATA-AGGAGCACTGA
1 ATGTGCTAAAATGATAAGGAAATCATACT-AAGTGTATGGATTTCCAGATA-GAGCACTTA
* * *
43234 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGCAC-TA
1 ATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTTA
* * * * * *
43292 TATGTGCCAAAATGATAAGTAAATTATACTGAGTGTATGGATTTCCATATGGAGCAC-TA
1 -ATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTTA
* * * * *
43351 TATGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATATGGAGCACTGA
1 -ATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTTA
* * * * *
43411 GTGTGCTAAAATGATAAAGAAATCATATTGAA-TATATGGATTTCCAGATAGGGCA-TTA
1 ATGTGCTAAAATGATAAGGAAATCATACT-AAGTGTATGGATTTCCAGATAGAGCACTTA
* ** * * *
43469 TATGTGCTAAAATGGTAAGGGGATCATACTGAGTGTATGGATTTCCAGAAAAAGCAC-TA
1 -ATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTTA
* * * * *** * * * *
43528 AGGGTACTACAAGGATAAGGAAATCATACTAACAATATGGATTTTCATATAGGGCACTTC
1 A-TGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTTA
* * * * * * * * *
43588 ACGTGCTAAAAATGGTAA-AAAGATCATACT-ACTGGTATGGATTCTCGA-ATCGGGAACTTC
1 ATGTGCT-AAAATGATAAGGAA-ATCATACTAAGT-GTATGGATT-TCCAGATAGAGCACTTA
* * * *
43648 ATGTGCTAAAAATGGTAAAGG-AATCATACTAA-TGGTATGGATTCTCGA-ATAGGGCACTTC
1 ATGTGCT-AAAATGAT-AAGGAAATCATACTAAGT-GTATGGATT-TCCAGATAGAGCACTTA
* * * * *
43708 GTGTGCTAAAATGAGAAGGAAATCATATTAAGTATAT-GATATTCCAGATAGAGCACTGA
1 ATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGAT-TTCCAGATAGAGCACTTA
* * * * *
43767 GA-GTGCTAATATTATAAGGAAATTATACGAATTGTAT
1 -ATGTGCTAAAATGATAAGGAAATCATACTAAGTGTAT
43804 AAATTTCCTA
Statistics
Matches: 463, Mismatches: 85, Indels: 44
0.78 0.14 0.07
Matches are distributed among these distances:
58 16 0.03
59 347 0.75
60 94 0.20
61 6 0.01
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.29
Consensus pattern (59 bp):
ATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGGATTTCCAGATAGAGCACTTA
Found at i:43934 original size:44 final size:44
Alignment explanation
Indices: 43871--44089 Score: 375
Period size: 44 Copynumber: 5.0 Consensus size: 44
43861 TCAGTAATAC
* *
43871 AAATTATAGTAAGTATATTGGTAAAATAAGTTTACGAGTTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
*
43915 AAATTATAGTAAGTATATTGGTAAAATAAGCTTGCGAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
43959 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
44003 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
* * * *
44047 GAATAATAGTAAGTATATTGGTAAAATAAACTTACAAGCTTAT
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTAT
44090 AGATTAAATG
Statistics
Matches: 167, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 167 1.00
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.35
Consensus pattern (44 bp):
AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
Found at i:48793 original size:59 final size:59
Alignment explanation
Indices: 48698--48999 Score: 360
Period size: 59 Copynumber: 5.1 Consensus size: 59
48688 ATAAGAAGAT
*
48698 TCATACTGAGTGTATGGATTTCCATATGGAGCACTATATGTGCTAAAATGACAAGGAAA
1 TCATACTGAGTGTATGGATTTCCATATGGAGCACTATATGTGCTAAAATGATAAGGAAA
* * *
48757 TCATATTGAGTGTATGGATTTCCATATGGAGTACTATATGTGCTAAAATGATAATGAAA
1 TCATACTGAGTGTATGGATTTCCATATGGAGCACTATATGTGCTAAAATGATAAGGAAA
* * *
48816 TCATACCGAGTGTATGGATTTTCATATGGAGCACTGA-GTGTGCTAAAATGATAAGGAAA
1 TCATACTGAGTGTATGGATTTCCATATGGAGCACT-ATATGTGCTAAAATGATAAGGAAA
* * * * * *
48875 TCATATTGAATATATGGATTTCCAAATAGG-GCATTATATGTGCTAAAATGGTAA-GAGAA
1 TCATACTGAGTGTATGGATTTCCATAT-GGAGCACTATATGTGCTAAAATGATAAGGA-AA
* *** * * *
48934 TCATACTGAGTGTATGGATTTCCAGAAAAAGCACTA-AGGGTGCTACAAGGATAAGGAAA
1 TCATACTGAGTGTATGGATTTCCATATGGAGCACTATA-TGTGCTAAAATGATAAGGAAA
48993 TCATACT
1 TCATACT
49000 AACAATATGG
Statistics
Matches: 205, Mismatches: 31, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
58 4 0.02
59 196 0.96
60 5 0.02
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (59 bp):
TCATACTGAGTGTATGGATTTCCATATGGAGCACTATATGTGCTAAAATGATAAGGAAA
Found at i:48913 original size:118 final size:117
Alignment explanation
Indices: 48688--49040 Score: 408
Period size: 118 Copynumber: 3.0 Consensus size: 117
48678 TTTATGGTGA
* * *
48688 ATAAGAAGATTCATACTGAGTGTATGGATTTCCATATGGAGCACTATATGTGCTAAAATGACAAG
1 ATAAG-AGAATCATACTGAGTGTATGGATTTCCATATGGAGCACTA-GTGTGCTAAAATGATAAG
* * *
48753 GAAATCATATTGAGTGTATGGATTTCCATAT-GGAGTACTATATGTGCTAAAATG
64 GAAATCATATTGAATATATGGATTTCCATATAGG-GTATTATATGTGCTAAAATG
* *
48807 ATAATGA-AATCATACCGAGTGTATGGATTTTCATATGGAGCACTGAGTGTGCTAAAATGATAAG
1 ATAA-GAGAATCATACTGAGTGTATGGATTTCCATATGGAGCACT-AGTGTGCTAAAATGATAAG
* *
48871 GAAATCATATTGAATATATGGATTTCCAAATAGGGCATTATATGTGCTAAAATG
64 GAAATCATATTGAATATATGGATTTCCATATAGGGTATTATATGTGCTAAAATG
* * *** * * *
48925 GTAAGAGAATCATACTGAGTGTATGGATTTCCAGAAAAAGCACTAAGGGTGCTACAAGGATAAGG
1 ATAAGAGAATCATACTGAGTGTATGGATTTCCATATGGAGCACT-AGTGTGCTAAAATGATAAGG
* * * *
48990 AAATCATACT-AACAATATGGATTTTCATATAGGGTACTT-CATGTGCTAAAA
65 AAATCATATTGAA-TATATGGATTTCCATATAGGGTA-TTATATGTGCTAAAA
49041 GGGGTAAAGG
Statistics
Matches: 201, Mismatches: 27, Indels: 13
0.83 0.11 0.05
Matches are distributed among these distances:
117 4 0.02
118 186 0.93
119 10 0.05
120 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (117 bp):
ATAAGAGAATCATACTGAGTGTATGGATTTCCATATGGAGCACTAGTGTGCTAAAATGATAAGGA
AATCATATTGAATATATGGATTTCCATATAGGGTATTATATGTGCTAAAATG
Found at i:49011 original size:177 final size:178
Alignment explanation
Indices: 48710--49132 Score: 409
Period size: 177 Copynumber: 2.4 Consensus size: 178
48700 ATACTGAGTG
* * ** *
48710 TATGGATTTCCATAT-GGAGCACTATATGTGCTAAAATGACAAG-GAAATCATATTGAGTGTATG
1 TATGGATTTCCAAATAGG-GCATTATATGTGCTAAAATGGTAAGAG-AATCATACTGAGTGTATG
* *** * * * * * ***
48773 GATTTCCATATGGAGTACTATATGTGCTAAAATGATAATGAAATCATACCGAGTGTATGGATTTT
64 GATTTCCAGAAAAAGCACTATAGGTGCTAAAAGGATAAGGAAATCATACCAACAATATGGATTTT
* * *
48838 CATAT-GGAGCAC-TGAGTGTGCTAAAA-TGAT-AAGGAAATCATATTGAAT-A
129 CATATAGG-GCACTTCA-TGTGCTAAAAGGGATAAAGG-AATCATACT-AATGA
48887 TATGGATTTCCAAATAGGGCATTATATGTGCTAAAATGGTAAGAGAATCATACTGAGTGTATGGA
1 TATGGATTTCCAAATAGGGCATTATATGTGCTAAAATGGTAAGAGAATCATACTGAGTGTATGGA
* *
48952 TTTCCAGAAAAAGCACTA-AGGGTGCTACAAGGATAAGGAAATCATACTAACAATATGGATTTTC
66 TTTCCAGAAAAAGCACTATA-GGTGCTAAAAGGATAAGGAAATCATACCAACAATATGGATTTTC
* * * *
49016 ATATAGGGTACTTCATGTGCTAAAAGGGGTAAAGGGATCATACTAATGG
130 ATATAGGGCACTTCATGTGCTAAAAGGGATAAAGGAATCATACTAATGA
* * *
49065 TATGGATTACGAAATAGGGCACTT-CATGTGCTAAAAATGGTAA-ATGAATCATACTG-GTGGTA
1 TATGGATTTCCAAATAGGGCA-TTATATGTGCT-AAAATGGTAAGA-GAATCATACTGAGT-GTA
49127 TGGATT
62 TGGATT
49133 CTCGAATAGG
Statistics
Matches: 205, Mismatches: 29, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
176 1 0.00
177 123 0.60
178 45 0.22
179 36 0.18
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (178 bp):
TATGGATTTCCAAATAGGGCATTATATGTGCTAAAATGGTAAGAGAATCATACTGAGTGTATGGA
TTTCCAGAAAAAGCACTATAGGTGCTAAAAGGATAAGGAAATCATACCAACAATATGGATTTTCA
TATAGGGCACTTCATGTGCTAAAAGGGATAAAGGAATCATACTAATGA
Found at i:49069 original size:60 final size:60
Alignment explanation
Indices: 48986--49160 Score: 192
Period size: 60 Copynumber: 2.9 Consensus size: 60
48976 CTACAAGGAT
*** * *
48986 AAGGAAATCATACTAACAATATGGATTTTC-ATATAGGGTACTTCATGTGCTAAAAGGGGTA
1 AAGG-AATCATACTAATGGTATGGATTTTCGA-ATAGGGCACTTCATGTGCTAAAAAGGGTA
* * *
49047 AAGGGATCATACTAATGGTATGGA-TTACGAAATAGGGCACTTCATGTGCTAAAAATGGTA
1 AAGGAATCATACTAATGGTATGGATTTTCG-AATAGGGCACTTCATGTGCTAAAAAGGGTA
* ** * *
49107 AATGAATCATACTGGTGGTATGGATTCTCGAATAGGGCACTTCGTGTGCTAAAA
1 AAGGAATCATACTAATGGTATGGATTTTCGAATAGGGCACTTCATGTGCTAAAA
49161 TGAGAAGGAA
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
59 3 0.03
60 85 0.89
61 8 0.08
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (60 bp):
AAGGAATCATACTAATGGTATGGATTTTCGAATAGGGCACTTCATGTGCTAAAAAGGGTA
Found at i:49534 original size:44 final size:44
Alignment explanation
Indices: 49313--49532 Score: 341
Period size: 44 Copynumber: 5.0 Consensus size: 44
49303 CCAGTAATGC
* *
49313 AAATTATAGTAATTATATTGGTAAAATAAGCTTACAAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
49357 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
*
49401 AAATTATAGTAAATATATTGGTAAAATAAGCTTACGAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
* *
49445 AAATTATAGTAAGTGTATTGGTAAAATAAGCTTACGACCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
* * * * * *
49489 GAATAATGGTATGTATATTGGTAAAATAAACTTACGATCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
49533 GATTAAATGG
Statistics
Matches: 163, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 163 1.00
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35
Consensus pattern (44 bp):
AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
Found at i:52908 original size:2 final size:2
Alignment explanation
Indices: 52901--52928 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
52891 ACTATAGATA
52901 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52929 GAAAATAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:54421 original size:20 final size:21
Alignment explanation
Indices: 54383--54421 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
54373 CATCAAGGTC
*
54383 TTTGTTGAGGCCATGAAATCT
1 TTTGTCGAGGCCATGAAATCT
54404 TTTGTCGAGGCCAT-AAAT
1 TTTGTCGAGGCCATGAAAT
54422 TCATGCAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (21 bp):
TTTGTCGAGGCCATGAAATCT
Found at i:58116 original size:17 final size:16
Alignment explanation
Indices: 58091--58134 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
58081 AAATAAGAAA
58091 TGAAAGAAATGAAAAT
1 TGAAAGAAATGAAAAT
58107 TGATAAGAAATG-AAAT
1 TGA-AAGAAATGAAAAT
58123 TGAAAGAAATGA
1 TGAAAGAAATGA
58135 TATCAAAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 8 0.31
16 10 0.38
17 8 0.31
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.20
Consensus pattern (16 bp):
TGAAAGAAATGAAAAT
Found at i:59210 original size:35 final size:36
Alignment explanation
Indices: 59171--59250 Score: 90
Period size: 35 Copynumber: 2.2 Consensus size: 36
59161 ATGGTGATAA
* * *
59171 AAGATGGTTAGGATATAGGCGTG-CAATAGTAATGG
1 AAGATGGTGAGGATATAGGCGCGAAAATAGTAATGG
* * * *
59206 AAGATGGTGATGTTATAGGCGCGAAAATGGTGATGG
1 AAGATGGTGAGGATATAGGCGCGAAAATAGTAATGG
59242 AAGATGGTG
1 AAGATGGTG
59251 GTGTTTAGGT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 19 0.51
36 18 0.49
ACGTcount: A:0.33, C:0.05, G:0.38, T:0.25
Consensus pattern (36 bp):
AAGATGGTGAGGATATAGGCGCGAAAATAGTAATGG
Found at i:64080 original size:16 final size:17
Alignment explanation
Indices: 64059--64100 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
64049 AAAGATATGG
64059 TAATGAAATAAGAAA-A
1 TAATGAAATAAGAAAGA
* *
64075 TAATGAAAGAATAAAGA
1 TAATGAAATAAGAAAGA
64092 -AATGAAATA
1 TAATGAAATA
64101 GTAAGAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.14, T:0.19
Consensus pattern (17 bp):
TAATGAAATAAGAAAGA
Found at i:64842 original size:36 final size:35
Alignment explanation
Indices: 64748--64858 Score: 134
Period size: 35 Copynumber: 3.2 Consensus size: 35
64738 TTAGTGGTTA
** * * *
64748 TATAGGCGTGAAATGGTGATAAAAGATGGTTAGGA
1 TATAGGCGTGAAATGGTGATGGAAGATGGTGATGT
* *
64783 TATAGGCGTGCAATGGTAATGGAAGATGGTGATGT
1 TATAGGCGTGAAATGGTGATGGAAGATGGTGATGT
*
64818 TATAGGCGTGAAGATGGTGATGGAAGATGGTGGTGT
1 TATAGGCGTGAA-ATGGTGATGGAAGATGGTGATGT
64854 T-TAGG
1 TATAGG
64859 TAGTATCTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
35 43 0.66
36 22 0.34
ACGTcount: A:0.30, C:0.04, G:0.39, T:0.28
Consensus pattern (35 bp):
TATAGGCGTGAAATGGTGATGGAAGATGGTGATGT
Found at i:74771 original size:5 final size:6
Alignment explanation
Indices: 74754--74790 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
74744 GATATAGGAG
74754 TCTTTT TCTTTT TCTTTT TC-TTT TCTTCTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTT-TT TCTTTT T
74791 TGTTGCAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 5 0.17
6 18 0.62
7 6 0.21
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TCTTTT
Found at i:75026 original size:15 final size:15
Alignment explanation
Indices: 74987--75029 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
74977 AATAAGAAAC
* *
74987 GAAAGAAATATAAATT
1 GAAAGAAAT-GAAATG
75003 GATAAGAAATGAAATG
1 GA-AAGAAATGAAATG
75019 GAAAGAAATGA
1 GAAAGAAATGA
75030 TATCAAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 9 0.38
16 8 0.33
17 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.21, T:0.19
Consensus pattern (15 bp):
GAAAGAAATGAAATG
Found at i:76082 original size:58 final size:58
Alignment explanation
Indices: 76010--76639 Score: 908
Period size: 58 Copynumber: 10.9 Consensus size: 58
76000 GTGTGGTGTT
* *
76010 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCATTTCATACGCTAAAATGTTAA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
* * * * *
76068 GAAATCATATTAAGTGTATAAATTTCCATTTAGGACATTTCGTACGCTAAAATGTTAA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
* * *
76126 GAAATCATATTAAGTGTATGAATTTCCATATAGGGCGTTTAGTACGCTAAATTGTTAA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
* * * * *
76184 GAAATCATACTAAGTGTATGAACTTACATATAGGGCGTTTCGTTCGTTAAAATTTTAA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
* *
76242 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCATTTCGTACGCTAAAATGTAAA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
* ** * *
76300 GAAAGCATACTAAGTAAATGAATTTCCATATAGGGCATATT-GTACGCTAAAATGTTTA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGT-TTCGTACGCTAAAATGTTAA
* * *
76358 GAAATTATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTAGGCTAAATTGTTAA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
* * *
76416 GAAATCATATTAAGTGTATGAATTTCCGTATAGGGCTTTTCGTACGCTAAAATGTTAA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
*
76474 AAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
* *
76532 GAAAT-ATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACG-GATAAATTTTAA
1 GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTA-AAATGTTAA
* *
76589 GAAATCATACTAAGTAG-ATGAATTTTCATATATGGCGTTTCGTACGCTAAA
1 GAAATCATACTAAGT-GTATGAATTTCCATATAGGGCGTTTCGTACGCTAAA
76640 GTGTATGAAT
Statistics
Matches: 511, Mismatches: 55, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
56 1 0.00
57 55 0.11
58 451 0.88
59 4 0.01
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (58 bp):
GAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAA
Found at i:76706 original size:96 final size:96
Alignment explanation
Indices: 76542--76735 Score: 302
Period size: 96 Copynumber: 2.0 Consensus size: 96
76532 GAAATATACT
* *
76542 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGGATAAATTTTAAGAAATCATACTAAGTAGA
1 AAGTGTATGAATTTCCATATAGGGCATTTCGTACGGATAAATGTTAAGAAATCATACTAAGTAGA
* *
76607 TGAATTTTCATATATGGCGTTTCGTACGCTA
66 TGAATTTGCATATAGGGCGTTTCGTACGCTA
* *
76638 AAGTGTATGAATTTCCATATAGGGCATTTCTTAC-GCTAAACTGTTAAGAAATCATACTAAGT-G
1 AAGTGTATGAATTTCCATATAGGGCATTTCGTACGGATAAA-TGTTAAGAAATCATACTAAGTAG
76701 TATGAATTTGCATATAGGGCGTTTCGTACGCTA
65 -ATGAATTTGCATATAGGGCGTTTCGTACGCTA
76734 AA
1 AA
76736 ATGTTAAGAA
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 6 0.07
96 84 0.93
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (96 bp):
AAGTGTATGAATTTCCATATAGGGCATTTCGTACGGATAAATGTTAAGAAATCATACTAAGTAGA
TGAATTTGCATATAGGGCGTTTCGTACGCTA
Found at i:76731 original size:58 final size:58
Alignment explanation
Indices: 76638--77464 Score: 1287
Period size: 58 Copynumber: 14.3 Consensus size: 58
76628 TCGTACGCTA
* * *
76638 AAGTGTATGAATTTCCATATAGGGCATTTCTTACGCTAAACTGTTAAGAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
*
76696 AAGTGTATGAATTTGCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
* * *
76754 AATTGTATGAATTTCCATATAGGGTGTTTCGTACGCTAAAATGTTAAGAAAGCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
* *
76812 AAGTGTATGAATTTCCATATAGGGTGTTTCGTACGCTAAAATGTTAATAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
* * *
76870 AAGTGTATGAATTTCCATATAGGCCGTTTTGTACGATAAAATGTTAAGAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
*
76928 AAGTGTATGAATTTCCATATAGGGCGTTTCGTTCGCTAAAATGTTAAGAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
* * * *
76986 AAGTGTATGAATTTCCATATAGGGCGTTTAGTGCGCTAAAATGGTAAGAAAGCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
* * *
77044 AAGTTTATGAATTTCCATATAGGGCGTTTCAG-ATGCTAAAATGGTAAGAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTC-GTACGCTAAAATGTTAAGAAATCATACT
* * *
77102 AAGTGTATGAATTTCCATATAGGCCATTTCGTATGCTAAAATGTTAAGAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
** * *
77160 AAGTGTATGAATTTCCATATAGGGTATATCGTACGCTAAAATGTTAAGAAATCATTCT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
* * *
77218 AAGTGTATGAATTTGCATATAGGGCGTTTCGTGCGCTAAAATGTTAAAAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
* *
77276 AAGTGTATGAATTTCCATATAGGGCATTTCGTATGCTAAAATGTTAAGAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
* * * * *
77334 AAGTGTAAGAATTTCCATACAGGGTGTTTCATACGCTAAAATGTTAAGAAATCATATT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
*
77392 AAGTGTATGAATTTCCATATAGGGCATTTCGTACGCTAAAATGTTAAGAAATCATACT
1 AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
*
77450 TAGTGTATGAATTTC
1 AAGTGTATGAATTTC
77465 TGTAGGGGCA
Statistics
Matches: 703, Mismatches: 64, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
57 1 0.00
58 701 1.00
59 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (58 bp):
AAGTGTATGAATTTCCATATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATCATACT
Found at i:78646 original size:20 final size:20
Alignment explanation
Indices: 78621--78659 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
78611 CCATGATATG
78621 TAAATG-ATATACAAACATAA
1 TAAATGAATATA-AAACATAA
78641 TAAATGAATATAAAACATA
1 TAAATGAATATAAAACATA
78660 CGTAAGACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.26
Consensus pattern (20 bp):
TAAATGAATATAAAACATAA
Found at i:78728 original size:20 final size:19
Alignment explanation
Indices: 78691--78729 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
78681 AAGTAAAAAT
**
78691 GTGAAAACATATGTTATGC
1 GTGAAAACATATAATATGC
78710 GTGAAAATCATATAATATGC
1 GTGAAAA-CATATAATATGC
78730 AAGCGAATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (19 bp):
GTGAAAACATATAATATGC
Found at i:80893 original size:13 final size:12
Alignment explanation
Indices: 80869--80915 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
80859 CTTTTTGAAT
80869 TTTTC-TTTTTC
1 TTTTCTTTTTTC
80880 TTTTCTTTTCTTC
1 TTTTCTTTT-TTC
80893 TTTTCTGATTTTTC
1 TTTTCT--TTTTTC
*
80907 TCTTCTTTT
1 TTTTCTTTT
80916 GCCTTTTTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
11 5 0.16
12 6 0.19
13 9 0.29
14 8 0.26
15 3 0.10
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:80923 original size:27 final size:27
Alignment explanation
Indices: 80874--80925 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
80864 TGAATTTTTC
* *
80874 TTTTTCTTTTCTTTTCTTCTTTTCTGA
1 TTTTTCTCTTCTTTTCCTCTTTTCTGA
80901 TTTTTCTCTTCTTTTGCCT-TTTTCT
1 TTTTTCTCTTCTTTT-CCTCTTTTCT
80926 TTCTTTTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.02, C:0.21, G:0.04, T:0.73
Consensus pattern (27 bp):
TTTTTCTCTTCTTTTCCTCTTTTCTGA
Found at i:80928 original size:22 final size:20
Alignment explanation
Indices: 80875--80929 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 20
80865 GAATTTTTCT
80875 TTTTC-TTTTCTTT-TCTTC
1 TTTTCTTTTTCTTTCTCTTC
**
80893 TTTTCTGATT-TTTCTCTTC
1 TTTTCTTTTTCTTTCTCTTC
80912 TTTTGCCTTTTTCTTTCT
1 TTTT--CTTTTTCTTTCT
80930 TTTTGCACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
18 8 0.29
19 11 0.39
21 4 0.14
22 5 0.18
ACGTcount: A:0.02, C:0.22, G:0.04, T:0.73
Consensus pattern (20 bp):
TTTTCTTTTTCTTTCTCTTC
Found at i:80935 original size:18 final size:18
Alignment explanation
Indices: 80855--80936 Score: 68
Period size: 18 Copynumber: 4.7 Consensus size: 18
80845 CATTGGCTTG
*
80855 CTTTCTTTTTGAATTTTT
1 CTTTCTTTTTGCATTTTT
*
80873 CTTT-TTCTTTTC--TTTT
1 CTTTCTT-TTTGCATTTTT
80889 C-TTCTTTTCTG-ATTTTT
1 CTTTCTTTT-TGCATTTTT
*
80906 CTCTTC-TTTTGCCTTTTT
1 CT-TTCTTTTTGCATTTTT
80924 CTTTCTTTTTGCA
1 CTTTCTTTTTGCA
80937 CTTCAATTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
15 4 0.08
16 8 0.16
17 12 0.24
18 23 0.46
19 3 0.06
ACGTcount: A:0.05, C:0.20, G:0.05, T:0.71
Consensus pattern (18 bp):
CTTTCTTTTTGCATTTTT
Found at i:81290 original size:20 final size:21
Alignment explanation
Indices: 81253--81291 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
81243 GATGGTCTTG
*
81253 ATGAAGGATGTTGATGATGAA
1 ATGAAGGATGGTGATGATGAA
*
81274 ATGAA-GATGGTGGTGATG
1 ATGAAGGATGGTGATGATG
81292 TTGTATCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.28
Consensus pattern (21 bp):
ATGAAGGATGGTGATGATGAA
Found at i:81669 original size:19 final size:20
Alignment explanation
Indices: 81628--81678 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
81618 GAAACCCCTT
*
81628 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
*
81648 TGAAAATACATTA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
81667 TGAAGATACATG
1 TGAAAATACATG
81679 CTCTTGGCCG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:84257 original size:50 final size:52
Alignment explanation
Indices: 84182--84319 Score: 163
Period size: 59 Copynumber: 2.6 Consensus size: 52
84172 CACACTCCAA
*
84182 TTTTCCTTTTCATTGCAACTAGGAGGGTT-GG-TTAGAGCCATATTATCGAG
1 TTTTCCATTTCATTGCAACTAGGAGGGTTAGGATTAGAGCCATATTATCGAG
* *
84232 TTTTCCATTTCATTTCAACTTGGAGGGTTCTATAGGACACTTAGAGCCATATTATCGAG
1 TTTTCCATTTCATTGCAACTAGGAGGG---T-TAGG--A-TTAGAGCCATATTATCGAG
*
84291 TTTTCCATTTCATTGCGACTAGGAGGGTT
1 TTTTCCATTTCATTGCAACTAGGAGGGTT
84320 CGATAGGACA
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
50 24 0.33
53 1 0.01
54 1 0.01
55 3 0.04
56 1 0.01
59 43 0.59
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (52 bp):
TTTTCCATTTCATTGCAACTAGGAGGGTTAGGATTAGAGCCATATTATCGAG
Found at i:84285 original size:59 final size:59
Alignment explanation
Indices: 84213--84330 Score: 200
Period size: 59 Copynumber: 2.0 Consensus size: 59
84203 GGAGGGTTGG
* * *
84213 TTAGAGCCATATTATCGAGTTTTCCATTTCATTTCAACTTGGAGGGTTCTATAGGACAC
1 TTAGAGCCATATTATCGAGTTTTCCATTTCATTGCAACTAGGAGGGTTCGATAGGACAC
*
84272 TTAGAGCCATATTATCGAGTTTTCCATTTCATTGCGACTAGGAGGGTTCGATAGGACAC
1 TTAGAGCCATATTATCGAGTTTTCCATTTCATTGCAACTAGGAGGGTTCGATAGGACAC
84331 CTATACATCT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (59 bp):
TTAGAGCCATATTATCGAGTTTTCCATTTCATTGCAACTAGGAGGGTTCGATAGGACAC
Found at i:89942 original size:36 final size:35
Alignment explanation
Indices: 89846--89957 Score: 152
Period size: 35 Copynumber: 3.2 Consensus size: 35
89836 TTGGTGGTTA
* * **
89846 TATAGGCGTGAAATGGTGATAGAAGTTGATGATAA
1 TATAGGCGTGAAATGGTGATAGAAGATGGTGATGT
* * *
89881 TATAGGCGTGCAATGGAGATGGAAGATGGTGATGT
1 TATAGGCGTGAAATGGTGATAGAAGATGGTGATGT
89916 TATAGGCGTGAAAATGGTGATAGAAGATGGTGATGT
1 TATAGGCGTG-AAATGGTGATAGAAGATGGTGATGT
89952 TATAGG
1 TATAGG
89958 TAGGAGCAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
35 38 0.58
36 28 0.42
ACGTcount: A:0.33, C:0.04, G:0.36, T:0.28
Consensus pattern (35 bp):
TATAGGCGTGAAATGGTGATAGAAGATGGTGATGT
Found at i:117846 original size:27 final size:27
Alignment explanation
Indices: 117805--117858 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
117795 TGTTTCACCT
*
117805 ATAGGAATCAGCAAACAAATAAAGTAA
1 ATAGGAATCAACAAACAAATAAAGTAA
117832 ATAGGAATCAACAAACAAATAAAGTAA
1 ATAGGAATCAACAAACAAATAAAGTAA
117859 GCAATGTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.61, C:0.11, G:0.13, T:0.15
Consensus pattern (27 bp):
ATAGGAATCAACAAACAAATAAAGTAA
Found at i:131595 original size:16 final size:16
Alignment explanation
Indices: 131563--131610 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
131553 TAAGGTGGTA
131563 AATAAGAAAAGATGAAAG
1 AATAAG-AAA-ATGAAAG
* *
131581 AATAAGGAAATGAAAT
1 AATAAGAAAATGAAAG
*
131597 AGTAAGAAAATGAA
1 AATAAGAAAATGAA
131611 GATAACTTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 18 0.69
17 2 0.08
18 6 0.23
ACGTcount: A:0.65, C:0.00, G:0.21, T:0.15
Consensus pattern (16 bp):
AATAAGAAAATGAAAG
Done.