genome.fa.s1499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001499.1 Hibiscus syriacus cultivar Beakdansim tig00002938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124001

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1809--1883	31	2.5	30	80	6	89	45	6	5	42	1.53
3776--3809	10	3.4	10	92	8	52	67	0	8	23	1.18
3800--3854	13	4.3	13	80	13	53	61	0	0	38	0.96
3888--3926	20	2.0	20	95	5	71	51	5	0	43	1.24
6256--6286	14	2.2	14	94	0	53	45	0	3	51	1.17
9319--9361	21	2.0	21	86	8	61	65	4	4	25	1.32
26308--26432	55	2.2	56	84	2	171	18	26	24	31	1.98
28950--28992	20	2.2	20	83	8	52	58	0	0	41	0.98
29254--29303	14	3.4	15	73	13	50	16	4	4	76	1.10
30205--30231	14	1.9	14	100	0	54	44	33	7	14	1.73
37970--38028	31	1.9	31	92	0	100	40	6	10	42	1.65
38106--38148	22	2.0	22	100	0	86	51	13	0	34	1.42
38108--38156	22	2.2	22	88	3	71	55	14	0	30	1.40
38128--38455	32	11.7	32	73	25	307	51	13	0	34	1.41
38043--38476	54	8.0	54	82	11	401	51	13	0	34	1.41
38192--38234	22	2.0	22	100	0	86	51	13	0	34	1.42
38194--38242	22	2.2	22	88	3	71	55	14	0	30	1.40
38246--38288	22	2.0	22	100	0	86	51	13	0	34	1.42
38248--38296	22	2.2	22	88	3	71	55	14	0	30	1.40
38307--38380	23	3.1	24	77	13	73	50	17	0	32	1.47
38251--38401	81	1.9	80	97	1	284	51	15	0	33	1.43
38381--38423	22	2.0	22	100	0	86	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38383--38431	22	2.2	22	88	3	71	55	14	0	30	1.40
38435--38511	22	3.5	22	94	3	136	49	11	0	38	1.39
38053--38500	135	3.3	131	91	5	711	51	13	0	34	1.42
38499--38618	15	8.0	15	96	0	213	50	0	0	49	1.00
38892--38935	23	1.9	23	81	9	54	34	20	9	36	1.84
39065--39102	19	2.1	19	85	5	51	39	5	0	55	1.23
42567--42613	20	2.3	20	88	0	67	21	19	23	36	1.95
42587--42680	33	2.8	34	81	3	118	14	19	21	44	1.86
42654--42700	20	2.3	20	92	0	76	19	19	21	40	1.92
44646--44681	14	2.6	14	90	0	54	30	0	22	47	1.52
44855--45050	20	9.8	20	70	16	77	13	22	21	41	1.88
44860--44923	33	1.9	34	96	3	121	14	23	18	43	1.86
44855--44941	19	4.8	19	79	15	103	13	22	18	44	1.85
44855--44955	52	1.9	53	91	2	168	12	23	18	44	1.85
44934--44968	14	2.5	14	100	0	70	8	25	22	42	1.82
44960--45048	40	2.2	40	90	4	135	15	20	26	37	1.93
47497--47546	24	2.1	24	84	0	64	38	20	18	24	1.93
48413--48494	20	4.1	20	80	3	101	21	20	19	37	1.94
48394--48485	20	4.5	21	79	4	82	22	20	19	36	1.95
48468--48523	29	1.9	29	100	0	112	19	21	21	37	1.94
48526--48571	21	2.2	21	88	0	65	36	17	28	17	1.92
49483--49550	29	2.3	29	100	0	136	25	7	20	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52230--52320	40	2.3	40	92	0	146	37	15	13	34	1.86
52567--52596	15	2.0	15	93	0	51	53	10	13	23	1.69
55467--55515	16	2.8	17	78	15	55	69	6	8	16	1.33
56605--56651	3	15.3	3	95	4	85	68	0	0	31	0.90
56663--56941	72	3.7	74	75	11	216	44	6	4	44	1.50
56663--56984	37	8.8	37	73	16	185	45	6	4	44	1.48
56838--56862	12	2.1	12	100	0	50	40	8	8	44	1.63
56753--57002	39	6.6	37	73	14	133	44	5	4	44	1.48
57580--58282	165	4.2	163	89	2	965	23	21	25	29	1.99
57615--58282	85	8.0	82	81	4	781	23	21	25	28	1.99
63690--63723	16	2.1	17	88	5	52	67	5	11	14	1.39
64822--64868	3	15.3	3	95	4	85	68	0	0	31	0.90
64880--65190	36	8.7	35	75	14	219	45	6	4	43	1.50
64898--65114	69	3.1	68	81	7	233	44	6	5	42	1.54
65047--65071	12	2.1	12	100	0	50	40	8	8	44	1.63
68019--68082	3	22.0	3	78	12	71	64	3	3	29	1.24
68027--68082	26	2.2	26	87	6	78	64	3	3	28	1.27
68125--68158	4	8.5	4	86	0	50	50	0	2	47	1.16
68125--68158	6	5.7	6	92	0	50	50	0	2	47	1.16
69760--69803	20	2.2	20	83	0	52	50	2	0	47	1.13
70284--70364	25	3.1	25	70	16	83	29	2	2	65	1.18
70334--70375	20	2.0	21	86	13	61	30	2	0	66	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72105--72166	15	4.2	14	74	10	52	43	1	3	51	1.27
76836--76869	2	17.0	2	100	0	68	50	0	0	50	1.00
96426--96478	20	2.7	20	100	0	106	26	13	26	33	1.93
101669--101774	53	2.0	53	90	3	169	33	12	16	37	1.86
105583--105710	41	3.1	41	95	2	222	31	0	42	26	1.56
107532--107587	23	2.4	23	75	0	58	28	16	12	42	1.84
113348--113440	29	3.1	29	74	6	87	34	17	2	46	1.60
113337--113452	60	1.9	60	85	0	160	35	18	3	43	1.67
113329--113485	60	2.6	59	80	8	156	35	18	4	42	1.71
114019--114177	60	2.6	59	76	7	151	42	6	20	30	1.78
117236--117503	134	2.0	134	90	0	419	38	20	12	28	1.89
119130--119159	14	2.1	14	93	0	51	26	0	0	73	0.84
122839--122902	18	3.7	18	93	4	105	40	6	23	29	1.79
123489--123558	32	2.1	33	89	5	106	42	35	8	12	1.74
123581--123636	29	2.0	27	83	13	69	48	21	7	23	1.74

Tables:   1

The End!