genome.fa.s15.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000015.1 Hibiscus syriacus cultivar Beakdansim tig00000030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75590

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418--672	109	2.4	110	84	3	331	34	23	17	23	1.96
1638--1687	3	17.3	3	80	19	54	30	0	0	70	0.88
1741--1821	33	2.5	33	87	4	110	37	17	14	30	1.90
2298--2337	18	2.2	19	86	13	57	22	2	0	75	0.93
2302--2331	15	2.1	14	93	6	51	23	0	0	76	0.78
2299--2339	21	2.0	21	85	9	57	21	2	0	75	0.92
2820--2877	27	2.2	26	78	9	62	37	15	12	34	1.85
7210--7236	13	2.1	13	100	0	54	62	0	7	29	1.22
10001--10092	32	2.9	32	83	3	123	42	19	9	28	1.83
26448--26544	20	4.8	20	78	5	115	41	16	18	23	1.90
26448--26558	40	2.8	39	87	2	132	42	15	18	23	1.88
27385--27438	24	2.2	24	93	0	90	24	18	16	40	1.90
29976--30067	19	5.4	19	68	24	87	46	17	21	14	1.83
29976--30102	33	3.8	33	90	2	184	46	19	20	13	1.83
30041--30117	19	4.3	19	76	18	76	45	23	16	14	1.84
30113--30243	19	7.7	19	61	23	67	12	24	19	44	1.84
30117--30243	33	3.8	33	94	0	218	12	24	18	44	1.85
30160--30243	17	5.1	17	67	25	63	14	23	16	45	1.84
30546--30586	20	2.0	20	90	0	64	14	14	14	56	1.69
31113--31572	20	22.9	20	81	4	203	28	19	18	33	1.95
31284--31533	40	6.2	40	88	3	310	27	18	18	36	1.94
31141--31474	180	1.9	180	89	3	521	28	20	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31114--31517	180	2.2	180	84	6	514	28	19	17	34	1.95
31914--31962	25	2.0	25	84	8	64	40	6	10	42	1.63
34473--34620	76	2.0	75	90	4	235	29	2	10	58	1.45
34594--34656	19	3.2	19	75	4	54	31	0	12	55	1.37
35285--35325	21	1.9	22	90	5	66	19	4	0	75	0.98
40201--40226	12	2.2	12	100	0	52	26	7	34	30	1.85
40860--40942	35	2.4	35	95	0	148	50	16	16	15	1.78
42544--42707	76	2.2	75	88	3	240	29	2	11	56	1.47
45713--45867	53	2.8	56	81	6	185	29	9	18	43	1.80
45633--45869	18	13.0	18	72	6	147	27	8	18	44	1.79
46524--46581	19	2.9	19	74	25	57	72	0	3	24	1.00
46527--46581	7	8.1	7	77	22	55	72	0	3	23	1.00
46622--46664	18	2.4	19	80	11	54	69	0	6	23	1.12
47270--47484	75	2.9	75	88	5	301	57	11	1	29	1.44
47356--47403	25	2.0	24	83	4	60	62	8	2	27	1.35
49438--49560	5	23.8	5	74	9	95	71	1	4	21	1.14
49502--49561	11	5.5	11	86	6	79	78	1	3	16	0.97
55057--55138	14	6.2	13	73	13	62	68	0	0	31	0.90
55098--55133	3	12.7	3	88	11	58	69	0	0	30	0.89
55066--55170	17	6.2	17	71	17	76	68	0	2	28	1.04
55096--55170	9	9.1	8	69	16	55	70	0	4	25	1.04
55211--55253	18	2.4	18	88	0	59	67	0	9	23	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55862--56059	76	2.6	76	91	3	303	59	11	1	28	1.38
59318--59352	6	5.8	6	100	0	70	0	82	0	17	0.66
60244--60297	24	2.3	23	81	9	65	48	22	0	29	1.51
60829--60858	2	15.0	2	100	0	60	50	0	0	50	1.00
61261--61298	18	2.1	18	90	0	58	34	18	10	36	1.85
61379--61552	37	4.7	37	80	5	156	47	8	2	41	1.48
63986--64022	15	2.5	15	91	8	58	45	5	2	45	1.40
66239--66286	9	5.1	9	85	9	69	79	12	8	0	0.94
66239--66286	10	5.0	10	87	7	73	79	12	8	0	0.94
66239--66289	19	2.7	19	93	0	93	78	13	7	0	0.96
75396--75421	8	3.2	8	100	0	52	38	0	11	50	1.39

Tables:   1

The End!