Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001500.1 Hibiscus syriacus cultivar Beakdansim tig00002942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 222393
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:832 original size:151 final size:150
Alignment explanation
Indices: 467--845 Score: 531
Period size: 151 Copynumber: 2.5 Consensus size: 150
457 AACTAATTAT
*
467 AATTAAAAT-ATATTAAATCGATATAATTTATAAATATTAAAAAATAAAT-TTATTAATCATATT
1 AATTAAAATAATATT-AATTGATATAATTTATAAATATT-AAAAA-AAATCTTA--AATCATATT
530 TTAAATTAGGACTAGCTTGATTAAATATAAATATGAAAACTAAATGTTATTGTATAAATTTTAAA
61 TTAAATTAGGACTAGCTTGATTAAATATAAATATG-AAACTAAATGTTATTGTATAAATTTTAAA
595 ATATCATATAAATCTCCATTATCTAG
125 ATATCATATAAATCTCCATTATCTAG
*
621 AAGTAAAATAATA--AA-TGATATAATTTATAAATATTAAAAAATAATTTCTTAAATCATATTTT
1 AATTAAAATAATATTAATTGATATAATTTATAAATATTAAAAAA-AA--TCTTAAATCATATTTT
*
683 AAATTAGGATTAGCTTGATTAAATATATAAATATG-AACTAAATATGTTATTGTATAAATTTTAA
63 AAATTAGGACTAGCTTGATT-AA-ATATAAATATGAAACT-AA-ATGTTATTGTATAAATTTTAA
*
747 AATATCATATCAATCT-CATTATCTAG
124 AATATCATATAAATCTCCATTATCTAG
*
773 AATTAAAATAATATTAATTGATATAA-TTATAAATATTAAAAAAAATCTTAAATCTTATTTTAAA
1 AATTAAAATAATATTAATTGATATAATTTATAAATATTAAAAAAAATCTTAAATCATATTTTAAA
*
837 TTAAGACTA
66 TTAGGACTA
846 CATGATCTAT
Statistics
Matches: 205, Mismatches: 8, Indels: 27
0.85 0.03 0.11
Matches are distributed among these distances:
149 1 0.00
150 7 0.03
151 78 0.38
152 29 0.14
153 52 0.25
154 27 0.13
155 11 0.05
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (150 bp):
AATTAAAATAATATTAATTGATATAATTTATAAATATTAAAAAAAATCTTAAATCATATTTTAAA
TTAGGACTAGCTTGATTAAATATAAATATGAAACTAAATGTTATTGTATAAATTTTAAAATATCA
TATAAATCTCCATTATCTAG
Found at i:2232 original size:60 final size:60
Alignment explanation
Indices: 2148--2290 Score: 137
Period size: 60 Copynumber: 2.4 Consensus size: 60
2138 ATGGGTAAAA
**
2148 TACACAAATGGTCCCCTAACTATAGGTTATTGATTTATTAAGTCGC-TCG-CATATTAAAAGT
1 TACA-AAATGGTCCCCTAACTATAGAATATTGATTTATTAAGTC-CATCGAC-TATTAAAAGT
* * * * * * *
2209 TACAAAATGGTCCTCTTATTATAGAATGTTGTTTTGTTAAGTCCATTGACTATTAAAAGT
1 TACAAAATGGTCCCCTAACTATAGAATATTGATTTATTAAGTCCATCGACTATTAAAAGT
* * *
2269 TACAAAATAGTCACCTGACTAT
1 TACAAAATGGTCCCCTAACTAT
2291 TTATTATGTT
Statistics
Matches: 66, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
59 1 0.02
60 60 0.91
61 5 0.08
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (60 bp):
TACAAAATGGTCCCCTAACTATAGAATATTGATTTATTAAGTCCATCGACTATTAAAAGT
Found at i:9155 original size:15 final size:16
Alignment explanation
Indices: 9123--9155 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
9113 CCTTTTATTT
9123 TTATTTTATACTTTAAA
1 TTATTTTATAC-TTAAA
9140 TTATTTTATA-TTAAA
1 TTATTTTATACTTAAA
9155 T
1 T
9156 AATAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
17 10 0.62
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTTTATACTTAAA
Found at i:26527 original size:43 final size:43
Alignment explanation
Indices: 26465--26548 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
26455 TTTAAACTCC
*
26465 AAAGTAACAATCCACAAATACACCAAACTAACATATTACAACT
1 AAAGTAACAATCCAAAAATACACCAAACTAACATATTACAACT
* *
26508 AAAGTAACAATCCAAAAATACATCAAACTAATATATTACAA
1 AAAGTAACAATCCAAAAATACACCAAACTAACATATTACAA
26549 TCATTCTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.56, C:0.21, G:0.02, T:0.20
Consensus pattern (43 bp):
AAAGTAACAATCCAAAAATACACCAAACTAACATATTACAACT
Found at i:29359 original size:10 final size:10
Alignment explanation
Indices: 29346--29385 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
29336 TATAAGATTA
29346 TAAAATTTAT
1 TAAAATTTAT
29356 TAAAATTTAT
1 TAAAATTTAT
*
29366 TAAAATTTAA
1 TAAAATTTAT
*
29376 TATAATTTAT
1 TAAAATTTAT
29386 GTATCAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TAAAATTTAT
Found at i:41697 original size:3 final size:3
Alignment explanation
Indices: 41689--41713 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
41679 ATCTGAAAAT
41689 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
41714 GGAGAAATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:44562 original size:21 final size:22
Alignment explanation
Indices: 44516--44566 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
44506 TAGGTATCAA
*
44516 GGGTGCCAGAGGCATTAGGCGG
1 GGGTGCCTGAGGCATTAGGCGG
44538 GGGTGCCTGAGGCATTAGG-GG
1 GGGTGCCTGAGGCATTAGGCGG
44559 GGGTGCCT
1 GGGTGCCT
44567 TTGTCTGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.14, C:0.18, G:0.51, T:0.18
Consensus pattern (22 bp):
GGGTGCCTGAGGCATTAGGCGG
Found at i:52292 original size:2 final size:2
Alignment explanation
Indices: 52285--52310 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
52275 ACCTGCATGG
52285 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
52311 GGTAAATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:59646 original size:60 final size:59
Alignment explanation
Indices: 59573--59735 Score: 195
Period size: 60 Copynumber: 2.7 Consensus size: 59
59563 ATATTCTTGT
* *
59573 GACCATTTTGTAACTTTTAATAGTCGAGAGACTTCATAAA-TCAACATTCTA-TAGTCGAAG
1 GACCA-TTTGTAACTTTTAATAGTCGAGGGACTTAATAAAGT-AACATTCTATTA-TCGAAG
* * *
59633 GACCATCTTGTAACTTTGAATAGTCGAGGGACTTAATAAAGTAATATTCTATTATCGAAT
1 GACCAT-TTGTAACTTTTAATAGTCGAGGGACTTAATAAAGTAACATTCTATTATCGAAG
* * *
59693 GATCATTCTATAACTTTTAATAGTTGAGGGACTTAATAAAGTA
1 GACCATT-TGTAACTTTTAATAGTCGAGGGACTTAATAAAGTA
59736 GTATCCTATA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
59 2 0.02
60 85 0.94
61 3 0.03
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (59 bp):
GACCATTTGTAACTTTTAATAGTCGAGGGACTTAATAAAGTAACATTCTATTATCGAAG
Found at i:60436 original size:16 final size:17
Alignment explanation
Indices: 60404--60436 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
60394 ATTTAAATTA
60404 CGATTGCGGTCGCATTT
1 CGATTGCGGTCGCATTT
*
60421 CGATTG-GGTGGCATTT
1 CGATTGCGGTCGCATTT
60437 ATTATGGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.12, C:0.18, G:0.33, T:0.36
Consensus pattern (17 bp):
CGATTGCGGTCGCATTT
Found at i:64241 original size:28 final size:28
Alignment explanation
Indices: 64188--64241 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
64178 AATTCGGTGT
*
64188 GCTTAACAAGCAACGAGACGAGCAACGA
1 GCTTAACAAGCAACGAGACGAACAACGA
64216 GCTTAACGAA-CAACGA-ATCGAACAAC
1 GCTTAAC-AAGCAACGAGA-CGAACAAC
64242 AAATTTTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 1 0.04
28 20 0.87
29 2 0.09
ACGTcount: A:0.44, C:0.26, G:0.20, T:0.09
Consensus pattern (28 bp):
GCTTAACAAGCAACGAGACGAACAACGA
Found at i:64273 original size:31 final size:31
Alignment explanation
Indices: 64238--64296 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
64228 ACGAATCGAA
* *
64238 CAACAAATTTTCTTAATGAGCACAAGTCTAG
1 CAACAAATTTTCTTAACGAACACAAGTCTAG
*
64269 CAACAAATTTTTTTAACGAACACAAGTC
1 CAACAAATTTTCTTAACGAACACAAGTC
64297 GAATATTACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (31 bp):
CAACAAATTTTCTTAACGAACACAAGTCTAG
Found at i:66641 original size:27 final size:25
Alignment explanation
Indices: 66611--66672 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
66601 AAATAAAAAC
*
66611 AAAATATTTTTAAATTAAGTTAATAGT-
1 AAAATATTTTT-AA-TAAGATAATA-TA
*
66638 AAAATATATTTAATAAGATAATATA
1 AAAATATTTTTAATAAGATAATATA
66663 AAAATATTTT
1 AAAATATTTT
66673 ATATAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 1 0.03
25 18 0.58
26 2 0.06
27 10 0.32
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (25 bp):
AAAATATTTTTAATAAGATAATATA
Found at i:66660 original size:25 final size:26
Alignment explanation
Indices: 66611--66671 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
66601 AAATAAAAAC
* *
66611 AAAATATTTTTAAATTAAGTTAATAGT
1 AAAATATATTTAAATTAAGATAATA-T
66638 AAAATATATTT-AA-TAAGATAATAT
1 AAAATATATTTAAATTAAGATAATAT
66662 AAAA-ATATTT
1 AAAATATATTT
66672 TATATAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 6 0.19
24 5 0.16
25 9 0.28
26 2 0.06
27 10 0.31
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (26 bp):
AAAATATATTTAAATTAAGATAATAT
Found at i:66709 original size:22 final size:22
Alignment explanation
Indices: 66667--66721 Score: 80
Period size: 20 Copynumber: 2.6 Consensus size: 22
66657 AATATAAAAA
66667 TATTTTATATAAAAAATTATAT
1 TATTTTATATAAAAAATTATAT
66689 TATTTT-TA-AAAAAATTATA-
1 TATTTTATATAAAAAATTATAT
*
66708 TATTTAATATAAAA
1 TATTTTATATAAAA
66722 TATTTTGTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 5 0.17
20 13 0.43
21 6 0.20
22 6 0.20
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TATTTTATATAAAAAATTATAT
Found at i:66977 original size:39 final size:38
Alignment explanation
Indices: 66928--67033 Score: 110
Period size: 39 Copynumber: 2.7 Consensus size: 38
66918 TTTTAAAAAT
*
66928 AATTAAGAACGTTAATGTGAAATAATTTAAGAAATTAAG
1 AATTTAGAACGTTAATGTGAAATAATTTAAGAAATT-AG
*
66967 AATTTAGAACGTT-ATAGTGTCAA-AATTTAAGAAATTAG
1 AATTTAGAACGTTAAT-GTG-AAATAATTTAAGAAATTAG
* *
67005 AATTTTAAAATGTTAGA-GTGAAATAATTT
1 AA-TTTAGAACGTTA-ATGTGAAATAATTT
67034 GAGGATTATG
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
38 8 0.14
39 45 0.80
40 2 0.04
41 1 0.02
ACGTcount: A:0.47, C:0.03, G:0.15, T:0.35
Consensus pattern (38 bp):
AATTTAGAACGTTAATGTGAAATAATTTAAGAAATTAG
Found at i:69110 original size:20 final size:20
Alignment explanation
Indices: 69087--69145 Score: 83
Period size: 20 Copynumber: 3.2 Consensus size: 20
69077 AATAAGGTTA
69087 TTTATTTTAAAATAATTTAT
1 TTTATTTTAAAATAATTTAT
69107 TTTATTTTAAAATAATTTA-
1 TTTATTTTAAAATAATTTAT
69126 -TTA---TAAAATAATTTAT
1 TTTATTTTAAAATAATTTAT
69142 TTTA
1 TTTA
69146 AAATAATTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
15 12 0.32
17 3 0.08
18 3 0.08
20 19 0.51
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTATTTTAAAATAATTTAT
Found at i:69143 original size:30 final size:30
Alignment explanation
Indices: 69107--69298 Score: 278
Period size: 30 Copynumber: 6.2 Consensus size: 30
69097 AATAATTTAT
69107 TTTATTTTAAAATAATTTATTATAAAATAA
1 TTTATTTTAAAATAATTTATTATAAAATAA
69137 TTTATTTTAAAATAATTTATTATAAAATAA
1 TTTATTTTAAAATAATTTATTATAAAATAA
69167 TTTATTTTAAAATAATTTATTATAAAATAA
1 TTTATTTTAAAATAATTTATTATAAAATAA
*
69197 TTTATTATAAAATAATTTATTATAAAATAA
1 TTTATTTTAAAATAATTTATTATAAAATAA
* *
69227 TTTACTTTAAAATAAATTATTATAAAATATGCATTGA
1 TTTATTTTAAAATAATTTATTAT-AAA-AT--A---A
*
69264 TTTATTTTAAAATAATTTATT-TTAAATAA
1 TTTATTTTAAAATAATTTATTATAAAATAA
69293 TTTATT
1 TTTATT
69299 AGTATGAATT
Statistics
Matches: 148, Mismatches: 7, Indels: 15
0.87 0.04 0.09
Matches are distributed among these distances:
29 7 0.05
30 109 0.74
31 3 0.02
32 3 0.02
34 3 0.02
35 2 0.01
36 1 0.01
37 20 0.14
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (30 bp):
TTTATTTTAAAATAATTTATTATAAAATAA
Found at i:69292 original size:14 final size:15
Alignment explanation
Indices: 69107--69298 Score: 242
Period size: 15 Copynumber: 12.4 Consensus size: 15
69097 AATAATTTAT
69107 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
*
69122 TTTATTATAAAATAA
1 TTTATTTTAAAATAA
69137 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
*
69152 TTTATTATAAAATAA
1 TTTATTTTAAAATAA
69167 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
*
69182 TTTATTATAAAATAA
1 TTTATTTTAAAATAA
*
69197 TTTATTATAAAATAA
1 TTTATTTTAAAATAA
*
69212 TTTATTATAAAATAA
1 TTTATTTTAAAATAA
*
69227 TTTACTTTAAAATAA
1 TTTATTTTAAAATAA
* *
69242 ATTATTATAAAATATGCATTGA
1 TTTATT-TTAAA-AT--A---A
69264 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
69279 TTTATTTT-AAATAA
1 TTTATTTTAAAATAA
69293 TTTATT
1 TTTATT
69299 AGTATGAATT
Statistics
Matches: 158, Mismatches: 12, Indels: 15
0.85 0.06 0.08
Matches are distributed among these distances:
14 12 0.08
15 126 0.80
16 4 0.03
17 2 0.01
18 1 0.01
19 1 0.01
20 2 0.01
21 4 0.03
22 6 0.04
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (15 bp):
TTTATTTTAAAATAA
Found at i:69317 original size:32 final size:31
Alignment explanation
Indices: 69278--69429 Score: 151
Period size: 32 Copynumber: 5.4 Consensus size: 31
69268 TTTTAAAATA
69278 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
69310 ATTTATTTT--A-AA---A-TA-TA-GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
69332 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
69364 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
69386 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
69418 ATTTATTTTAAA
1 ATTTATTTTAAA
69430 ATATGGATTG
Statistics
Matches: 100, Mismatches: 0, Indels: 40
0.71 0.00 0.29
Matches are distributed among these distances:
22 27 0.27
23 3 0.03
24 5 0.05
25 4 0.04
26 4 0.04
27 2 0.02
28 4 0.04
29 4 0.04
30 5 0.05
31 2 0.02
32 40 0.40
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (31 bp):
ATTTATTTTAAATAATTTATTAGTATGATTG
Found at i:69331 original size:22 final size:22
Alignment explanation
Indices: 69306--69397 Score: 76
Period size: 22 Copynumber: 3.7 Consensus size: 22
69296 ATTAGTATGA
69306 ATTGATTTATTTTAAAATATAG
1 ATTGATTTATTTTAAAATATAG
69328 ATTGATTTATTTTAAATAATTTATTAG
1 ATTGATTTATTTT-AA-AA--TA-TAG
* *
69355 TATGGATTGATTTATTTTAAAATATGG
1 -ATTGA-T---TTATTTTAAAATATAG
69382 ATTGATTTATTTTAAA
1 ATTGATTTATTTTAAA
69398 TAATTTATTA
Statistics
Matches: 57, Mismatches: 3, Indels: 20
0.71 0.04 0.25
Matches are distributed among these distances:
22 23 0.40
23 2 0.04
24 2 0.04
25 1 0.02
26 6 0.11
27 5 0.09
28 6 0.11
29 1 0.02
30 2 0.04
31 2 0.04
32 7 0.12
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (22 bp):
ATTGATTTATTTTAAAATATAG
Found at i:69335 original size:69 final size:67
Alignment explanation
Indices: 69196--69353 Score: 189
Period size: 69 Copynumber: 2.3 Consensus size: 67
69186 TTATAAAATA
*
69196 ATTTATTATAAAATAATTTATTATAAAATAATTTACTTTAAAATAAATTATTATAAAATATGCAT
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTACTTTAAAATAAATTATTATAAAATATGCAT
69261 TG
66 TG
* * * * *
69263 ATTTATTTTAAAATAATTTATT-TTAAATAATTTA-TTAGTATGAATTGATTTATTTTAAAATAT
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTACTT--TA--AAATAAATTATTATAAAATAT
69326 AG-ATTG
62 -GCATTG
69332 ATTTATTTT-AAATAATTTATTA
1 ATTTATTTTAAAATAATTTATTA
69354 GTATGGATTG
Statistics
Matches: 79, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
65 2 0.03
66 11 0.14
67 23 0.29
68 12 0.15
69 30 0.38
70 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.50
Consensus pattern (67 bp):
ATTTATTTTAAAATAATTTATTATAAAATAATTTACTTTAAAATAAATTATTATAAAATATGCAT
TG
Found at i:69343 original size:54 final size:54
Alignment explanation
Indices: 69278--69903 Score: 667
Period size: 54 Copynumber: 11.4 Consensus size: 54
69268 TTTTAAAATA
* *
69278 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
69332 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
69386 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
69440 ATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTA-TTT---TAA---A--A-TATGGATTG
69498 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* ***
69552 ATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTATTGTAGTTGTATGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTA-T-TT-TA-AAATATGGATTG
*
69604 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
69658 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAATA---ATTT
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * ** * * * *** *
69708 ATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGTATTG
1 ATTTATTTTAAATAATTTA--TT--AGTATGGATTGATTTA-T-TT-TA-AAATATGGATTG
***
69770 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATTGTAGTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-T-TT-TA-AAATATGGATTG
69828 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
69882 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
69904 TTGTAGTTGT
Statistics
Matches: 493, Mismatches: 37, Indels: 84
0.80 0.06 0.14
Matches are distributed among these distances:
48 36 0.07
49 8 0.02
50 22 0.04
51 2 0.00
52 23 0.05
53 5 0.01
54 222 0.45
55 7 0.01
56 8 0.02
57 7 0.01
58 103 0.21
59 2 0.00
60 7 0.01
62 18 0.04
63 5 0.01
64 18 0.04
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:69497 original size:32 final size:32
Alignment explanation
Indices: 69456--69733 Score: 281
Period size: 32 Copynumber: 8.7 Consensus size: 32
69446 TATTGTAGTT
69456 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
69488 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
69520 GTATGGATTGATTTATTTTAAAATATGGATTGATTTA
1 GTATGGATTGATTTATTTT-AAATA---ATTTA-TTA
* * ** * * * *
69557 TTATTGTAGTTGTATGGATTGATT-TATTATTGTAGTT
1 GTA-TGGA-TTG-ATTTATT--TTAAATAATT-TATTA
69594 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
69626 GTATGAATTGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
69649 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
69680 GTATGGATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
69712 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
69734 ATATGGATTG
Statistics
Matches: 203, Mismatches: 21, Indels: 44
0.76 0.08 0.16
Matches are distributed among these distances:
22 13 0.06
23 4 0.02
25 1 0.00
26 3 0.01
28 3 0.01
29 1 0.00
31 4 0.02
32 122 0.60
33 10 0.05
34 5 0.02
35 3 0.01
36 7 0.03
37 11 0.05
38 4 0.02
39 3 0.01
40 7 0.03
42 2 0.01
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:69576 original size:22 final size:24
Alignment explanation
Indices: 69550--69610 Score: 86
Period size: 26 Copynumber: 2.4 Consensus size: 24
69540 AAATATGGAT
69550 TGATTTATTATTGTAGTTGTATGG
1 TGATTTATTATTGTAGTTGTATGG
69574 ATTGATTTATTATTGTAGTTGTATGG
1 --TGATTTATTATTGTAGTTGTATGG
69600 ATTGATTTATT
1 --TGATTTATT
69611 TTAAATAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.56
Consensus pattern (24 bp):
TGATTTATTATTGTAGTTGTATGG
Found at i:69636 original size:138 final size:134
Alignment explanation
Indices: 69327--69701 Score: 495
Period size: 138 Copynumber: 2.8 Consensus size: 134
69317 TTAAAATATA
**
69327 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATGGAT
* * *
69392 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
66 TTGAAATAATTTATAAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
69457 TATG
131 TATG
**
69461 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAATAATTTATTAGTATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAAT-ATGGATT-G-ATG
** * ***
69525 GA-TTGATTTATTTTA-AAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTATT
63 GATTTGAAATAATTTATAAATATGGATTGATTTA-T-TT-TA-AAATATGGATTGATTTATTATT
69588 GTAGTTGTATG
124 GTAGTTGTATG
* **
69599 GATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATGGAT
* * *
69664 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
66 TTGAAATAATTTATAAATATGGATTGATTTATTTTAAA
69702 TAATTTATTT
Statistics
Matches: 205, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
133 4 0.02
134 66 0.32
135 13 0.06
136 10 0.05
137 13 0.06
138 95 0.46
139 4 0.02
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.53
Consensus pattern (134 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATGGAT
TTGAAATAATTTATAAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
TATG
Found at i:69652 original size:22 final size:22
Alignment explanation
Indices: 69627--69669 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
69617 AATTTATTAG
69627 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
69649 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
69670 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:69802 original size:32 final size:32
Alignment explanation
Indices: 69760--69871 Score: 148
Period size: 32 Copynumber: 3.7 Consensus size: 32
69750 TATTGTAGTT
*
69760 GTATGTATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
69792 GTATGGATTGATTTA--TT--AT--TGTAGTT-
1 GTATGGATTGATTTATTTTAAATAATTTA-TTA
69818 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
69850 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
69872 ATATGGATTG
Statistics
Matches: 69, Mismatches: 3, Indels: 16
0.78 0.03 0.18
Matches are distributed among these distances:
26 18 0.26
27 2 0.03
28 4 0.06
30 4 0.06
31 2 0.03
32 39 0.57
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:69830 original size:192 final size:190
Alignment explanation
Indices: 69278--69839 Score: 643
Period size: 192 Copynumber: 2.9 Consensus size: 190
69268 TTTTAAAATA
* * *
69278 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT-AA-AA--TA-TAG-ATTGATTTA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGA
* * ***
69337 TTTTAAATAATTTATTAGTATGGATTGATTTA-T-TT-TA-AAATATGGATTGATTTATTTTAAA
66 -TTT--AT--TTTA-AAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAA
*** ***
69398 TAATTTATTAGTATGGATTGATTTA-T-TTTAAAATATGGATTGATTTATTATTGTAGTTGTATG
125 TAATTTATTAGTATGGATTGATTTATTATTTATTGTATGGATTGATTTA-T-TT-TA-AAATATG
69461 GATTG
186 GATTG
69466 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGA
* *
69531 TTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTATT--GTAGTT
66 TTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATT-TTAAATAATT
* * * * *
69594 GTA-T-GGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATT
130 -TATTAGTATGGATTGA-TTT--ATTATTTATT-GTATGGATTGATTTATTTTAAAATATGGATT
69657 G
190 G
*
69658 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGA
*
69723 TTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGTATTGATTTATTTTAAATAATTT
66 TTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTT
69788 ATTAGTATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAA
131 ATTAGTATGGATTGATTTATTATT-TA-TTGTATGGATTGATTTATTTTAAA
69840 TAATTTATTA
Statistics
Matches: 320, Mismatches: 30, Indels: 44
0.81 0.08 0.11
Matches are distributed among these distances:
188 55 0.17
189 7 0.02
190 12 0.04
191 19 0.06
192 171 0.53
193 21 0.07
194 17 0.05
195 5 0.02
196 13 0.04
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (190 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGA
TTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTT
ATTAGTATGGATTGATTTATTATTTATTGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:69876 original size:22 final size:22
Alignment explanation
Indices: 69851--69893 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
69841 AATTTATTAG
69851 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
69873 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
69894 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:69879 original size:192 final size:189
Alignment explanation
Indices: 69377--69903 Score: 551
Period size: 192 Copynumber: 2.7 Consensus size: 189
69367 TATTTTAAAA
***
69377 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-T-TTTAAAATATGGATTG
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATTTATTGTATGGATTG
69440 ATTTA--TT--AT--TGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGA
66 ATTTATTTTAAATAATGTA-TTGTATGGATTGATTTA-TTT---TAA---A--A-TATGGATTGA
69499 TTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGT
120 TTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGT
69564 AGTTG
185 AGTTG
* * * * * *
69569 TATGGATTGATTTATTATT--GTAGTTGTA-T-GGATTGATTTATTTTAAATAATTTATTAGTAT
1 TATGGATTGATTTATT-TTAAATAATT-TATTAGTATGGATTGA-TTT--ATTATTTATT-GTAT
* * ** * ** * * *
69630 GAATTGATTTATTTTAAA-ATATGGATTG-ATTTATTTTAAATAATTTATTAGTATGGATTGATT
60 GGATTGATTTATTTTAAATA-ATGTATTGTATGGA-TTGATTTATTTTA-AAATATGGATTGATT
*
69693 TATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAG
122 TATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAG
69758 TTG
187 TTG
*
69761 TATGTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATTGTAGTTGTATGGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATT-TA-TTGTATGGAT
*
69826 TGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTT
64 TGATTTATTTTAAATAATGTATT-GTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTT
69891 AAATAATTTATTA
128 AAATAATTTATTA
69904 TTGTAGTTGT
Statistics
Matches: 270, Mismatches: 39, Indels: 52
0.75 0.11 0.14
Matches are distributed among these distances:
190 8 0.03
191 15 0.06
192 173 0.64
193 24 0.09
194 11 0.04
195 5 0.02
196 13 0.05
197 2 0.01
198 2 0.01
200 6 0.02
201 8 0.03
202 3 0.01
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (189 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATTTATTGTATGGATTG
ATTTATTTTAAATAATGTATTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAA
TAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
Found at i:75535 original size:2 final size:2
Alignment explanation
Indices: 75528--75600 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
75518 TAAACTTTTG
75528 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75570 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75601 ATAATATGTT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:79077 original size:15 final size:15
Alignment explanation
Indices: 79057--79086 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79047 TATCACAATC
79057 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
79072 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
79087 AGCACCGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (15 bp):
GCGCAGGATTCCGGG
Found at i:87616 original size:2 final size:2
Alignment explanation
Indices: 87609--87644 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
87599 TAATAATGAA
87609 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87645 GCGAGATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90498 original size:30 final size:31
Alignment explanation
Indices: 90462--90541 Score: 90
Period size: 30 Copynumber: 2.6 Consensus size: 31
90452 TTGAATTCAG
* *
90462 GAGTCAAATTAATATTTTATTTAAAGTTT-A
1 GAGTCAAATTAATATTTTATCTAAAATTTAA
* * *
90492 GAGTCAAAATGATATTTCATCTAAAATTTAA
1 GAGTCAAATTAATATTTTATCTAAAATTTAA
* *
90523 GGGTCAAATTAAAATTTTA
1 GAGTCAAATTAATATTTTA
90542 CCTATTTTAC
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
30 24 0.62
31 15 0.38
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.40
Consensus pattern (31 bp):
GAGTCAAATTAATATTTTATCTAAAATTTAA
Found at i:91896 original size:65 final size:65
Alignment explanation
Indices: 91804--91933 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
91794 AAGCCATTTA
91804 GTTTTTTTATTATTATTAATTTGAGTAAATATAAGATAATATCTGTTCAAAGATAAAATATCCGT
1 GTTTTTTTATTATTATTAATTTGAGTAAATATAAGATAATATCTGTTCAAAGATAAAATATCCGT
91869 GTTTTTTTATTATTATTAATTTGAGTAAATATAAGATAATATCTGTTCAAAGATAAAATATCCGT
1 GTTTTTTTATTATTATTAATTTGAGTAAATATAAGATAATATCTGTTCAAAGATAAAATATCCGT
91934 ACCCCTAATA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (65 bp):
GTTTTTTTATTATTATTAATTTGAGTAAATATAAGATAATATCTGTTCAAAGATAAAATATCCGT
Found at i:96530 original size:13 final size:13
Alignment explanation
Indices: 96512--96539 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
96502 AAATAATCTA
96512 GAAGATGAAGCCG
1 GAAGATGAAGCCG
96525 GAAGATGAAGCCG
1 GAAGATGAAGCCG
96538 GA
1 GA
96540 TTATTGACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.39, T:0.07
Consensus pattern (13 bp):
GAAGATGAAGCCG
Found at i:96595 original size:2 final size:2
Alignment explanation
Indices: 96588--96640 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
96578 GAAGGAGGTA
96588 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
96630 TG TG TG TG TG T
1 TG TG TG TG TG T
96641 ACAATCCGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:98131 original size:60 final size:60
Alignment explanation
Indices: 98006--98158 Score: 155
Period size: 60 Copynumber: 2.5 Consensus size: 60
97996 ATTTGGGATG
* * * * * * * * *
98006 AAATTAAAATGTTCAAAAGTTTAGGGACTATTTTATAATAAAGTCATAGTTTTGCGGATG
1 AAATTGAAATGTTCAAAAGTTTAAGGACTAATTTAGAATAAAATCATACTTTAGCAGATA
* *
98066 GAATTGAAATGTTCAAAAGTTTAAGGATTAATTTAGAATGAAAATCATACTTTAG-AGATA
1 AAATTGAAATGTTCAAAAGTTTAAGGACTAATTTAGAAT-AAAATCATACTTTAGCAGATA
** * *
98126 AAATTGAAACATTTAAAAGTTTAAGAACTAATT
1 AAATTGAAATGTTCAAAAGTTTAAGGACTAATT
98159 CAAAATAAGG
Statistics
Matches: 75, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
60 63 0.84
61 12 0.16
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.35
Consensus pattern (60 bp):
AAATTGAAATGTTCAAAAGTTTAAGGACTAATTTAGAATAAAATCATACTTTAGCAGATA
Found at i:113179 original size:166 final size:166
Alignment explanation
Indices: 112905--113247 Score: 661
Period size: 166 Copynumber: 2.1 Consensus size: 166
112895 CTAGATGAAA
*
112905 GTTTGCCATAGCATTCCCGTCCATTTCGATCCATTTGTTGTCATCTGTGAAATTCACCGGCCTTT
1 GTTTGCCATAGCATTCCCGTCCATTTCGATCCATTTGTTGTCATCTGTGAAATCCACCGGCCTTT
*
112970 CACTAATAGCTGCTAGACAACTGTCTTTCCTCAGGATGACCTTCATCTTCAATTTCCATAATGAG
66 CACTAATAGCTGCTAGACAACTGTCTTTCCTCAGGATGACCTTCATCTTCAATTTCCACAATGAG
113035 AAATTTCTCCCATTGAATTTTTCAATATCAAATTTC
131 AAATTTCTCCCATTGAATTTTTCAATATCAAATTTC
113071 GTTTGCCATAGCATTCCCGTCCATTTCGATCCATTTGTTGTCATCTGTGAAATCCACCGGCCTTT
1 GTTTGCCATAGCATTCCCGTCCATTTCGATCCATTTGTTGTCATCTGTGAAATCCACCGGCCTTT
113136 CACTAATAGCTGCTAGACAACTGTCTTTCCTCAGGATGACCTTCATCTTCAATTTCCACAATGAG
66 CACTAATAGCTGCTAGACAACTGTCTTTCCTCAGGATGACCTTCATCTTCAATTTCCACAATGAG
113201 AAATTTCTCCCATTGAATTTTTCAATATCAAATTTC
131 AAATTTCTCCCATTGAATTTTTCAATATCAAATTTC
113237 G-TTGCCATAGC
1 GTTTGCCATAGC
113248 TTCTATTACA
Statistics
Matches: 175, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
165 10 0.06
166 165 0.94
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.36
Consensus pattern (166 bp):
GTTTGCCATAGCATTCCCGTCCATTTCGATCCATTTGTTGTCATCTGTGAAATCCACCGGCCTTT
CACTAATAGCTGCTAGACAACTGTCTTTCCTCAGGATGACCTTCATCTTCAATTTCCACAATGAG
AAATTTCTCCCATTGAATTTTTCAATATCAAATTTC
Found at i:115333 original size:20 final size:20
Alignment explanation
Indices: 115308--115346 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
115298 TCCAGTTTTC
115308 AGGATTCCACCGCTAGCTGA
1 AGGATTCCACCGCTAGCTGA
115328 AGGATTCCACCGCTAGCTG
1 AGGATTCCACCGCTAGCTG
115347 CTCCCATGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (20 bp):
AGGATTCCACCGCTAGCTGA
Found at i:117085 original size:19 final size:19
Alignment explanation
Indices: 117061--117098 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
117051 ATTAATTTCC
117061 ACGAATTCATCCACACACA
1 ACGAATTCATCCACACACA
117080 ACGAATTCATCCACACACA
1 ACGAATTCATCCACACACA
117099 TATATATGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.37, G:0.05, T:0.16
Consensus pattern (19 bp):
ACGAATTCATCCACACACA
Found at i:117116 original size:4 final size:4
Alignment explanation
Indices: 117103--117190 Score: 122
Period size: 4 Copynumber: 22.0 Consensus size: 4
117093 CACACATATA
* * *
117103 TATG TGTG TATG TATG CATG TATG TATG TATG TATG TATG TATG CATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
117151 TATG TATG TATG TATG TATG CATG CATG TATG TATT TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
117191 AGAATTAATT
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 74 1.00
ACGTcount: A:0.24, C:0.05, G:0.25, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:118104 original size:150 final size:150
Alignment explanation
Indices: 117828--119598 Score: 3426
Period size: 150 Copynumber: 11.8 Consensus size: 150
117818 ACAGATACGA
*
117828 GAAAAGAGTGTTACATAACGTTTTTA-TTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTA
1 GAAAGGAGTGTTACATAACG-TTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTA
117892 ATAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTT
65 ATAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTT
117957 ATGATCAACAACCGAATACAG
130 ATGATCAACAACCGAATACAG
117978 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
118043 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
118108 TGATCAACAACCGAATAC-G
131 TGATCAACAACCGAATACAG
118127 AGAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTA
1 -GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTA
118192 ATAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTT
65 ATAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTT
118257 ATGATCAACAACCGAATACAG
130 ATGATCAACAACCGAATACAG
118278 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
118343 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
118408 TGATCAACAACCGAATACAG
131 TGATCAACAACCGAATACAG
118428 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAA--CTAA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
118491 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
*
118556 TGATCAACAACCGAATACGG
131 TGATCAACAACCGAATACAG
118576 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
118641 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
118706 TGATCAACAACCGAATACAG
131 TGATCAACAACCGAATACAG
118726 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
118791 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
118856 TGATCAACAACCGAATACAG
131 TGATCAACAACCGAATACAG
118876 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
118941 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
*
119006 TGATCAACAACCGAATACGG
131 TGATCAACAACCGAATACAG
119026 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
119091 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
119156 TGATCAACAACCGAATAC-G
131 TGATCAACAACCGAATACAG
119175 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
119240 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
119305 TGATCAACAACCGAATACAG
131 TGATCAACAACCGAATACAG
119325 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
*
119390 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGTTGATCCTACTTA
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
*
119455 TGATCAACAACCGAATACGG
131 TGATCAACAACCGAATACAG
*
119475 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTTA
1 GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
*
119540 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTCGTAGAACCATATTTGATGATCC
66 TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCC
119599 GATCAACAAT
Statistics
Matches: 1606, Mismatches: 9, Indels: 12
0.99 0.01 0.01
Matches are distributed among these distances:
148 147 0.09
149 155 0.10
150 1303 0.81
151 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (150 bp):
GAAAGGAGTGTTACATAACGTTTTAGTTTTCTGAAAGTTTTAAATTCGATCTTAATGAACTCTAA
TAGTCCCTTACTAATCAATCCAAGCATCTGATAATTTGTAGAACCATATTTGATGATCCTACTTA
TGATCAACAACCGAATACAG
Found at i:120848 original size:14 final size:14
Alignment explanation
Indices: 120829--120855 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
120819 TGATTATAAA
120829 ATTTTTAAAAAATT
1 ATTTTTAAAAAATT
120843 ATTTTTAAAAAAT
1 ATTTTTAAAAAAT
120856 ACTTCAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTTTTAAAAAATT
Found at i:120898 original size:14 final size:15
Alignment explanation
Indices: 120861--120898 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
120851 AAAATACTTC
120861 AAATTATTATTTTTTA
1 AAATTA-TATTTTTTA
*
120877 AAAATATATTTTTT-
1 AAATTATATTTTTTA
120891 AAATTATA
1 AAATTATA
120899 AAAAACTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 7 0.35
15 8 0.40
16 5 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AAATTATATTTTTTA
Found at i:121408 original size:3 final size:3
Alignment explanation
Indices: 121400--121433 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
121390 TTATTGAATG
121400 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
121434 TCACTTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:121566 original size:18 final size:18
Alignment explanation
Indices: 121543--121580 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
121533 TTCAACTAAT
121543 ACTCAATACCCTAAAATA
1 ACTCAATACCCTAAAATA
*
121561 ACTCAATACCTTAAAATA
1 ACTCAATACCCTAAAATA
121579 AC
1 AC
121581 GTGACAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (18 bp):
ACTCAATACCCTAAAATA
Found at i:123772 original size:52 final size:52
Alignment explanation
Indices: 123715--123814 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 52
123705 ATAACTAGGG
123715 TATTTTTTGGTCCGGGACGAAATAAAAGAAATGAGCACC-TATTTATGTTCTT
1 TATTTTTTGGTCCGGGACGAAATAAAAGAAATGAGC-CCATATTTATGTTCTT
* * *
123767 TATTTTTTGGTCTGGGGCGAAATAAAAGAAATGTGCCCATATTTATGT
1 TATTTTTTGGTCCGGGACGAAATAAAAGAAATGAGCCCATATTTATGT
123815 GATATTAACA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.05
52 42 0.95
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (52 bp):
TATTTTTTGGTCCGGGACGAAATAAAAGAAATGAGCCCATATTTATGTTCTT
Found at i:130519 original size:19 final size:19
Alignment explanation
Indices: 130495--130540 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
130485 TTTAAAATTT
* *
130495 AAAATATACAAATATACAA
1 AAAATAAACAAAAATACAA
* *
130514 AAAATAAATAAAAATACTA
1 AAAATAAACAAAAATACAA
130533 AAAATAAA
1 AAAATAAA
130541 AATTAAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAATAAACAAAAATACAA
Found at i:130536 original size:21 final size:21
Alignment explanation
Indices: 130494--130556 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
130484 ATTTAAAATT
130494 TAAAATATACAAATATAC-AAAAA
1 TAAAA-ATA-AAA-ATACTAAAAA
*
130517 -ATAAATAAAAATACTAAAAA
1 TAAAAATAAAAATACTAAAAA
* *
130537 TAAAAATTAAATTACTAAAA
1 TAAAAATAAAAATACTAAAA
130557 TATATATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 4 0.12
20 8 0.24
21 19 0.56
22 3 0.09
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAAAATAAAAATACTAAAAA
Found at i:140973 original size:5 final size:5
Alignment explanation
Indices: 140963--140988 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
140953 TTAATGTTTC
140963 ACCCG ACCCG ACCCG ACCCG ACCCG A
1 ACCCG ACCCG ACCCG ACCCG ACCCG A
140989 ATAATAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.58, G:0.19, T:0.00
Consensus pattern (5 bp):
ACCCG
Found at i:146668 original size:82 final size:81
Alignment explanation
Indices: 146568--146731 Score: 310
Period size: 82 Copynumber: 2.0 Consensus size: 81
146558 CAACCGTTTG
*
146568 ATTAATATAATTTGACATTACCGATTAAATCGTTATTTTAAAACATAAGTGAAGAAAAAAAGAAA
1 ATTAATATAATTTGACATTACCGATTAAATCGTTACTTTAAAACATAAGTGAAG-AAAAAAGAAA
146633 TTTACTCAAACATAAGT
65 TTTACTCAAACATAAGT
146650 ATTAATATAATTTGACATTACCGATTAAATCGTTACTTTAAAACATAAGTGAAGAAAAAAGAAAT
1 ATTAATATAATTTGACATTACCGATTAAATCGTTACTTTAAAACATAAGTGAAGAAAAAAGAAAT
146715 TTACTCAAACATAAGT
66 TTACTCAAACATAAGT
146731 A
1 A
146732 ACAATTTATG
Statistics
Matches: 81, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
81 28 0.35
82 53 0.65
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (81 bp):
ATTAATATAATTTGACATTACCGATTAAATCGTTACTTTAAAACATAAGTGAAGAAAAAAGAAAT
TTACTCAAACATAAGT
Found at i:146971 original size:20 final size:20
Alignment explanation
Indices: 146928--146971 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
146918 GTTAGCAATG
* *
146928 AACCGGCTGAAAACCGATAG
1 AACCGGCTGAAAACCGACAA
*
146948 AACCGGCTGAAAACCGGCAA
1 AACCGGCTGAAAACCGACAA
146968 AACC
1 AACC
146972 AGTTTGAACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.30, G:0.23, T:0.07
Consensus pattern (20 bp):
AACCGGCTGAAAACCGACAA
Found at i:148873 original size:21 final size:21
Alignment explanation
Indices: 148826--148893 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
148816 TGGTGGCACC
** *
148826 TGAAATGGATGCAGTGGCATCA
1 TGAAATGGATGTGGTGACAT-A
*
148848 T-AAATGGATGTGGTGCCATA
1 TGAAATGGATGTGGTGACATA
*
148868 TGAAAT-GACTGTGGTGACATC
1 TGAAATGGA-TGTGGTGACATA
148889 TGAAA
1 TGAAA
148894 CGGCTGCGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
20 4 0.10
21 34 0.87
22 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (21 bp):
TGAAATGGATGTGGTGACATA
Found at i:157575 original size:23 final size:23
Alignment explanation
Indices: 157546--157631 Score: 113
Period size: 23 Copynumber: 3.7 Consensus size: 23
157536 ACCCCTATAA
157546 GGGAACCGATTCCCCCTTTGAAT
1 GGGAACCGATTCCCCCTTTGAAT
**
157569 GGGAACCGATTCTACCCCCAT-AA-
1 GGGAACCGATTC--CCCCTTTGAAT
157592 GGGAACCGATTCCCCCTTTGAAT
1 GGGAACCGATTCCCCCTTTGAAT
*
157615 GGGAATCGATTCCCCCT
1 GGGAACCGATTCCCCCT
157632 GTAGGGGAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
21 5 0.09
22 2 0.04
23 40 0.74
24 2 0.04
25 5 0.09
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (23 bp):
GGGAACCGATTCCCCCTTTGAAT
Found at i:157592 original size:46 final size:46
Alignment explanation
Indices: 157535--157626 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
157525 AGGGAATCGA
*
157535 TACCCCTATAAGGGAACCGATTCCCCCTTTGAATGGGAACCGATTC
1 TACCCCCATAAGGGAACCGATTCCCCCTTTGAATGGGAACCGATTC
*
157581 TACCCCCATAAGGGAACCGATTCCCCCTTTGAATGGGAATCGATTC
1 TACCCCCATAAGGGAACCGATTCCCCCTTTGAATGGGAACCGATTC
157627 CCCCTGTAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (46 bp):
TACCCCCATAAGGGAACCGATTCCCCCTTTGAATGGGAACCGATTC
Found at i:157641 original size:21 final size:22
Alignment explanation
Indices: 157526--157651 Score: 66
Period size: 23 Copynumber: 5.7 Consensus size: 22
157516 ATTTGGCAGA
*
157526 GGGAATCGA-TACCCCTAT-AA-
1 GGGAATCGATTCCCCCT-TGAAG
* *
157546 GGGAACCGATTCCCCCTTTGAAT
1 GGGAATCGATTCCCCC-TTGAAG
* *
157569 GGGAACCGATTCTACCCCCAT-AA-
1 GGGAATCGA-T-T-CCCCCTTGAAG
* *
157592 GGGAACCGATTCCCCCTTTGAAT
1 GGGAATCGATTCCCCC-TTGAAG
*
157615 GGGAATCGATTCCCCC-TGTAG
1 GGGAATCGATTCCCCCTTGAAG
* *
157636 GGGAATTGATACCCCC
1 GGGAATCGATTCCCCC
157652 ATAGGGTTCT
Statistics
Matches: 87, Mismatches: 9, Indels: 19
0.76 0.08 0.17
Matches are distributed among these distances:
20 13 0.15
21 25 0.29
22 6 0.07
23 33 0.38
24 3 0.03
25 2 0.02
26 5 0.06
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.22
Consensus pattern (22 bp):
GGGAATCGATTCCCCCTTGAAG
Found at i:160709 original size:31 final size:31
Alignment explanation
Indices: 160674--160741 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
160664 AACGATCGAG
* *
160674 CACCTAAAATGGCAACAAAGTAAATGTTAGA
1 CACCTAAAATGGCAACAAAGAAAACGTTAGA
**
160705 CACCTAAAATGGCAACGGAGAAAACGTTAGA
1 CACCTAAAATGGCAACAAAGAAAACGTTAGA
160736 CACCTA
1 CACCTA
160742 TTCGAGAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.46, C:0.21, G:0.18, T:0.16
Consensus pattern (31 bp):
CACCTAAAATGGCAACAAAGAAAACGTTAGA
Found at i:164480 original size:32 final size:32
Alignment explanation
Indices: 164439--164499 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
164429 TTTCCATTGC
* *
164439 TTATCAAGTGTACTTGTATATAGTCACAAATT
1 TTATCAAGTGTACCTGTATATAATCACAAATT
*
164471 TTATCAAGTGTACCTGTGTATAATCACAA
1 TTATCAAGTGTACCTGTATATAATCACAA
164500 TTTATAAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (32 bp):
TTATCAAGTGTACCTGTATATAATCACAAATT
Found at i:165008 original size:22 final size:23
Alignment explanation
Indices: 164980--165075 Score: 83
Period size: 22 Copynumber: 4.3 Consensus size: 23
164970 CGACATATAG
164980 CTAAAGTGCCTTAGCACTAG-TA
1 CTAAAGTGCCTTAGCACTAGATA
* *
165002 CTAAAGTTCCTTGGCACTA-ATA
1 CTAAAGTGCCTTAGCACTAGATA
* * *
165024 CTAAAGTGTCTTGGAACT-GATA
1 CTAAAGTGCCTTAGCACTAGATA
* * * *
165046 CGAAAGTGCATTAGCA-TTGCTA
1 CTAAAGTGCCTTAGCACTAGATA
165068 CTAAAGTG
1 CTAAAGTG
165076 TCTCAACATT
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
21 1 0.02
22 58 0.98
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (23 bp):
CTAAAGTGCCTTAGCACTAGATA
Found at i:168302 original size:31 final size:32
Alignment explanation
Indices: 168243--168309 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
168233 ATATATAATA
* *
168243 AAATAATAGTATATGTATATTTATTGAATGTGG
1 AAATAACAGTATATGTATA-TTATTGAATGCGG
*
168276 AAATAACAGTGTATGTATA-TATTGAATGCGG
1 AAATAACAGTATATGTATATTATTGAATGCGG
168307 AAA
1 AAA
168310 CAATGTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 14 0.45
33 17 0.55
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.36
Consensus pattern (32 bp):
AAATAACAGTATATGTATATTATTGAATGCGG
Found at i:173527 original size:17 final size:17
Alignment explanation
Indices: 173505--173554 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
173495 TAATTTAATT
173505 TAATATATATATATATA
1 TAATATATATATATATA
*
173522 TAATAT-T-TATATATT
1 TAATATATATATATATA
* *
173537 TAATTTAAATATATATA
1 TAATATATATATATATA
173554 T
1 T
173555 CCGGCCCGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
15 12 0.44
16 1 0.04
17 14 0.52
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TAATATATATATATATA
Found at i:173553 original size:42 final size:42
Alignment explanation
Indices: 173462--173554 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 42
173452 AATATTAAAA
173462 ATAAT-TATTATATATATATAATATTAATAAATTTAATTTAAT
1 ATAATATA-TATATATATATAATATTAATAAATTTAATTTAAT
* * *
173504 TTAATATATATATATATATAATATTTATATATTTAATTTAA-
1 ATAATATATATATATATATAATATTAATAAATTTAATTTAAT
173545 AT-ATATATAT
1 ATAATATATAT
173555 CCGGCCCGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
40 8 0.17
41 1 0.02
42 35 0.76
43 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (42 bp):
ATAATATATATATATATATAATATTAATAAATTTAATTTAAT
Found at i:177918 original size:8 final size:8
Alignment explanation
Indices: 177888--177937 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
177878 ATTAATTATT
177888 TATTAAAA
1 TATTAAAA
* *
177896 TAATAATAT
1 TATTAA-AA
177905 TATTAAAA
1 TATTAAAA
177913 TATTAAAA
1 TATTAAAA
*
177921 -ATTATAA
1 TATTAAAA
177928 TATTAAAA
1 TATTAAAA
177936 TA
1 TA
177938 AGAATATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
7 6 0.18
8 22 0.65
9 6 0.18
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TATTAAAA
Found at i:177929 original size:15 final size:15
Alignment explanation
Indices: 177906--177935 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
177896 TAATAATATT
177906 ATTAAAATATTAAAA
1 ATTAAAATATTAAAA
*
177921 ATTATAATATTAAAA
1 ATTAAAATATTAAAA
177936 TAAGAATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATTAAAATATTAAAA
Found at i:177971 original size:40 final size:40
Alignment explanation
Indices: 177888--177971 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
177878 ATTAATTATT
* *
177888 TATTAAAATAATAATATTATTAAAATATTAAAAATTATAA
1 TATTAAAATAAGAATATTATTAAAATATTAAAAAGTATAA
* * *
177928 TATTAAAATAAGAATATTATATTATATTTTAAAAAGTAT-A
1 TATTAAAATAAGAATATTAT-TAAAATATTAAAAAGTATAA
177968 TATT
1 TATT
177972 CAATATTCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
40 24 0.63
41 14 0.37
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (40 bp):
TATTAAAATAAGAATATTATTAAAATATTAAAAAGTATAA
Found at i:178023 original size:13 final size:13
Alignment explanation
Indices: 177982--178038 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
177972 CAATATTCAA
177982 TAATTCAATAATAT
1 TAATT-AATAATAT
* *
177996 TATTTTATGAA-AT
1 TAATTAAT-AATAT
178009 TAATTAATAATAT
1 TAATTAATAATAT
*
178022 TAATT-TTAATAT
1 TAATTAATAATAT
178034 TAATT
1 TAATT
178039 TATTATATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
12 13 0.36
13 17 0.47
14 6 0.17
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (13 bp):
TAATTAATAATAT
Found at i:180522 original size:20 final size:20
Alignment explanation
Indices: 180499--180545 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
180489 ATTTCCTTAA
180499 GAAAATTAATGAATAT-TTTT
1 GAAAATT-ATGAATATATTTT
*
180519 GAAAATTTTGAATATATTTT
1 GAAAATTATGAATATATTTT
*
180539 TAAAATT
1 GAAAATT
180546 TAATATTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.47
Consensus pattern (20 bp):
GAAAATTATGAATATATTTT
Found at i:180532 original size:19 final size:20
Alignment explanation
Indices: 180508--180546 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
180498 AGAAAATTAA
180508 TGAATAT-TTTTGAAAATTT
1 TGAATATATTTTGAAAATTT
*
180527 TGAATATATTTTTAAAATTT
1 TGAATATATTTTGAAAATTT
180547 AATATTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (20 bp):
TGAATATATTTTGAAAATTT
Found at i:186948 original size:3 final size:3
Alignment explanation
Indices: 186931--187021 Score: 71
Period size: 3 Copynumber: 29.3 Consensus size: 3
186921 GTCCTTTTTT
* *
186931 TTA TATA TTA CTA TTA TTAA TTA -TA TTA TTA TTA TTA TTG TTA TTA
1 TTA T-TA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
186977 TTA TTA -TA TTA CATA TTTA TTA TATA TAA TATA TTA TTA -TA TTA T
1 TTA TTA TTA TTA -TTA -TTA TTA T-TA TTA T-TA TTA TTA TTA TTA T
187022 ATTTGTATTT
Statistics
Matches: 71, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
2 6 0.08
3 50 0.70
4 15 0.21
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:186998 original size:16 final size:16
Alignment explanation
Indices: 186934--187020 Score: 76
Period size: 16 Copynumber: 5.4 Consensus size: 16
186924 CTTTTTTTTA
*
186934 TATATTACTATTATTAAT
1 TATATTAATA-TATT-AT
186952 TATATT-AT-TATTAT
1 TATATTAATATATTAT
*
186966 TAT-TGTTAT-TATTAT
1 TATAT-TAATATATTAT
186981 TATATTACATAT-TTAT
1 TATATTA-ATATATTAT
186997 TATATATAATATATTAT
1 TATAT-TAATATATTAT
187014 TATATTA
1 TATATTA
187021 TATTTGTATT
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
13 1 0.02
14 6 0.10
15 16 0.27
16 18 0.30
17 13 0.22
18 6 0.10
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (16 bp):
TATATTAATATATTAT
Found at i:187022 original size:18 final size:17
Alignment explanation
Indices: 186942--187022 Score: 73
Period size: 17 Copynumber: 4.9 Consensus size: 17
186932 TATATATTAC
186942 TATTATTA-ATTAT-AT
1 TATTATTATATTATAAT
* *
186957 TATTATTATTATTGTTAT
1 TATTATTA-TATTATAAT
*
186975 TATTATTATATTA-CA-
1 TATTATTATATTATAAT
186990 TATTTATTATA-TATAAT
1 TA-TTATTATATTATAAT
187007 ATATTATTATATTATA
1 -TATTATTATATTATA
187023 TTTGTATTTA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
15 12 0.22
16 10 0.19
17 16 0.30
18 16 0.30
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (17 bp):
TATTATTATATTATAAT
Found at i:187126 original size:22 final size:24
Alignment explanation
Indices: 187101--187152 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
187091 TTAAAGATCT
*
187101 AGATCCTA-CCAAAAG-GCCCAAC
1 AGATCCGACCCAAAAGCGCCCAAC
* *
187123 AGATCCGACCCGAAGGCGCCCAAC
1 AGATCCGACCCAAAAGCGCCCAAC
187147 AGATCC
1 AGATCC
187153 AATCCAAGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.28
23 5 0.20
24 13 0.52
ACGTcount: A:0.35, C:0.38, G:0.19, T:0.08
Consensus pattern (24 bp):
AGATCCGACCCAAAAGCGCCCAAC
Found at i:204466 original size:17 final size:18
Alignment explanation
Indices: 204436--204471 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
204426 TTTATTATCA
204436 TTTTATTTACTACAATGT
1 TTTTATTTACTACAATGT
204454 TTTTATTTA-TACAATGT
1 TTTTATTTACTACAATGT
204471 T
1 T
204472 AATAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.58
Consensus pattern (18 bp):
TTTTATTTACTACAATGT
Found at i:205041 original size:30 final size:31
Alignment explanation
Indices: 205000--205058 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
204990 TAAAAACATA
*
205000 TGTATAATTAAATC-AAAAT-AAAAATTTACG
1 TGTACAATTAAA-CAAAAATAAAAAATTTACG
205030 TGTACAATTAAACAAAAATAAAAAATTTA
1 TGTACAATTAAACAAAAATAAAAAATTTA
205059 TGTGCCTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 1 0.04
30 16 0.62
31 9 0.35
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.31
Consensus pattern (31 bp):
TGTACAATTAAACAAAAATAAAAAATTTACG
Found at i:215412 original size:8 final size:8
Alignment explanation
Indices: 215399--215426 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
215389 AGATTCTCCC
215399 ATATGTAT
1 ATATGTAT
215407 ATATGTAT
1 ATATGTAT
215415 ATATGTAT
1 ATATGTAT
215423 ATAT
1 ATAT
215427 CTTCTTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (8 bp):
ATATGTAT
Found at i:218892 original size:9 final size:9
Alignment explanation
Indices: 218878--218907 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
218868 AGTGAAAATG
218878 AAAAATAAA
1 AAAAATAAA
218887 AAAAATAAA
1 AAAAATAAA
218896 AAAAATAAA
1 AAAAATAAA
218905 AAA
1 AAA
218908 TGAAAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAATAAA
Found at i:218914 original size:9 final size:9
Alignment explanation
Indices: 218848--218925 Score: 51
Period size: 9 Copynumber: 9.0 Consensus size: 9
218838 AGTATTTGCT
218848 TGAAGAAAAA
1 TGAA-AAAAA
218858 -GAAAAAAA
1 TGAAAAAAA
**
218866 TGAGTGAAAA
1 TGA-AAAAAA
218876 TG--AAAAA
1 TGAAAAAAA
*
218883 TAAAAAAAA
1 TGAAAAAAA
*
218892 TAAAAAAAA
1 TGAAAAAAA
218901 T--AAAAAA
1 TGAAAAAAA
218908 TG-AAAAAA
1 TGAAAAAAA
218916 TGGAAAAAAA
1 T-GAAAAAAA
218926 GAAGGGTCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
7 12 0.21
8 12 0.21
9 21 0.37
10 12 0.21
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.12
Consensus pattern (9 bp):
TGAAAAAAA
Found at i:218915 original size:16 final size:15
Alignment explanation
Indices: 218872--218915 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
218862 AAAATGAGTG
218872 AAAATGAAAAATAAAA
1 AAAATGAAAAA-AAAA
*
218888 AAAATAAAAAAAATAA
1 AAAATGAAAAAAA-AA
218904 AAAATGAAAAAA
1 AAAATGAAAAAA
218916 TGGAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 2 0.08
16 23 0.92
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (15 bp):
AAAATGAAAAAAAAA
Found at i:219929 original size:54 final size:55
Alignment explanation
Indices: 219824--220244 Score: 526
Period size: 54 Copynumber: 7.9 Consensus size: 55
219814 AGGTTTCCCA
* *
219824 ACGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAT
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
* * *
219879 GCGATCGTTGAAGATTGTTCGAGTC-TATACTCCCTGAAGAAATAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
* ** *
219933 GCGATCATTGAAAATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
* *
219988 ACGA-TGGTGAAGA-TGCTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
* * *
220041 GCGATTGATGAAGATTG-T-GGGTCTTATACTCTCTGAAG-AATAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
* *
220093 ACGATTGTTGAAGATTGCTCGAGTCTTATACCCTCTGAAG-AA-AGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
* * *
220146 -CGATTGATGAAGA-TG-T-GGGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
* * * * *
220197 ACGATTATTAAAGATTGTCCGAGT-TCTATACTCTCTAAAGAAAGAGGG
1 ACGATTGTTGAAGATTGTTCGAGTCT-TATACTCTCTGAAGAAATAGGG
220245 AGCGAACCCG
Statistics
Matches: 324, Mismatches: 30, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
49 18 0.06
50 3 0.01
51 12 0.04
52 51 0.16
53 75 0.23
54 85 0.26
55 80 0.25
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (55 bp):
ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
Done.