genome.fa.s1502.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001502.1 Hibiscus syriacus cultivar Beakdansim tig00002946_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82593

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2987--3141	28	5.2	28	76	15	123	48	2	6	42	1.42
2985--3158	94	1.8	97	87	3	264	48	2	6	43	1.41
3139--3178	19	2.1	19	100	0	80	47	0	5	47	1.24
4558--4593	18	2.1	18	90	10	58	16	11	0	72	1.12
17014--17282	149	1.8	149	80	1	333	34	15	8	42	1.76
18321--18373	18	2.9	18	91	0	88	33	33	18	13	1.90
18630--18683	2	27.0	2	100	0	108	50	0	0	50	1.00
18995--19134	63	2.2	63	85	8	178	28	20	18	32	1.96
19037--19517	160	3.0	160	97	0	899	28	17	19	34	1.95
25506--25564	18	3.3	18	80	0	64	35	32	15	16	1.90
26112--26250	63	2.2	64	84	8	178	29	20	18	30	1.97
35158--35203	21	2.2	21	88	7	67	41	10	10	36	1.75
35471--38015	262	9.8	262	86	3	3349	31	17	12	38	1.87
35471--37993	518	4.9	520	90	3	3603	31	17	12	38	1.87
39430--40070	59	10.9	59	88	3	875	35	18	11	34	1.87
40488--40543	22	2.7	20	81	10	67	26	28	16	28	1.97
40437--40618	95	1.9	95	94	0	319	24	26	16	31	1.96
43236--43389	20	7.7	20	80	4	184	37	24	19	18	1.94
43194--43387	40	4.8	41	91	3	288	38	25	18	17	1.92
43950--43990	20	2.0	20	95	0	73	56	17	14	12	1.68
43950--44000	20	2.5	20	87	0	57	52	21	11	13	1.72
44032--44186	33	4.5	33	83	6	193	12	21	19	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44096--44186	20	4.9	20	74	17	81	12	23	19	45	1.84
44239--44270	16	2.0	16	100	0	64	12	12	12	62	1.55
46163--46242	42	1.9	42	84	0	106	21	38	17	22	1.93
46794--46825	13	2.5	13	100	0	64	46	9	21	21	1.79
47639--47675	14	2.6	14	88	12	58	32	0	18	48	1.49
47782--47866	19	4.7	19	79	16	92	45	21	21	11	1.83
47814--47876	19	3.3	19	91	4	92	44	23	17	14	1.85
47897--47984	14	5.6	14	70	23	59	11	25	19	44	1.84
47872--48076	19	11.7	19	67	21	144	13	23	19	44	1.85
48034--48061	14	2.0	14	100	0	56	14	21	21	42	1.88
47876--48089	106	2.1	99	88	6	311	13	23	19	43	1.86
47876--48089	33	6.3	33	86	7	302	13	23	19	43	1.86
47909--48116	106	2.0	106	88	1	310	15	22	19	42	1.88
48082--48155	20	3.7	20	71	16	71	24	16	25	33	1.95
50400--50426	14	1.9	14	100	0	54	7	11	29	51	1.64
50623--50676	24	2.2	24	93	0	90	40	20	18	20	1.91
50623--50690	24	2.8	24	84	0	64	38	20	17	23	1.93
51529--51765	20	11.8	19	74	12	147	20	18	23	37	1.94
51535--51765	40	5.7	40	88	3	286	19	19	23	37	1.94
51537--51765	60	3.8	59	82	6	228	20	18	23	37	1.94
51794--51889	21	4.7	20	71	15	70	22	19	20	36	1.95
51794--51887	42	2.3	42	76	9	95	23	20	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51876--51929	20	2.7	19	75	8	63	16	18	31	33	1.93
52973--53025	17	3.1	17	100	0	106	16	5	30	47	1.70
53196--53220	12	2.1	12	100	0	50	60	0	0	40	0.97
63043--63081	21	1.9	20	89	5	60	20	0	38	41	1.53
68182--68220	21	1.9	20	89	5	60	20	0	38	41	1.53
72905--72946	21	2.0	21	95	0	75	23	21	21	33	1.97
76120--76165	22	2.1	21	88	11	67	54	0	4	41	1.20

Tables:   1

The End!