genome.fa.s1503.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001503.1 Hibiscus syriacus cultivar Beakdansim tig00002947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66280

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113--239	19	6.1	21	71	14	86	37	21	18	22	1.94
130--360	61	3.8	61	84	7	299	34	24	19	21	1.97
130--344	21	10.4	21	79	9	212	33	25	20	21	1.97
102--323	103	2.2	102	89	3	329	34	23	19	22	1.97
102--344	42	5.9	40	81	9	215	34	23	19	22	1.97
356--408	21	2.5	21	87	0	70	16	18	30	33	1.94
637--696	26	2.3	26	91	0	93	41	16	20	21	1.90
916--978	16	4.0	16	83	4	83	22	26	12	38	1.90
1269--1321	23	2.3	24	93	6	92	43	0	9	47	1.36
3806--3858	24	2.2	25	86	3	72	7	5	45	41	1.56
3811--3849	12	3.2	12	81	0	51	7	5	46	41	1.55
4277--4324	20	2.4	19	80	13	53	39	2	37	20	1.65
4552--4625	29	2.5	28	81	12	87	50	2	0	47	1.15
4571--4632	15	4.2	15	82	12	83	51	1	0	46	1.10
4546--4632	23	3.8	24	77	18	80	50	2	0	47	1.13
4675--4722	25	1.9	25	82	0	60	56	6	4	33	1.44
4668--4738	32	2.3	31	79	9	74	53	4	2	39	1.35
4869--4943	36	2.1	35	85	2	96	45	9	2	42	1.50
4957--4998	22	2.0	21	90	9	68	50	9	4	35	1.56
4986--5033	21	2.3	21	88	0	69	45	6	6	41	1.54
5076--5137	20	3.0	20	77	9	70	43	6	8	41	1.60
5113--5146	15	2.4	14	90	5	50	41	5	8	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5078--5162	20	4.4	19	69	26	63	41	7	8	43	1.62
5062--5217	57	2.7	57	80	13	169	40	9	9	40	1.71
5334--5384	14	3.7	14	76	2	50	21	0	31	47	1.51
5409--5453	23	1.9	24	90	4	74	44	2	2	51	1.26
5422--5469	20	2.5	20	89	3	71	41	8	4	45	1.53
5455--5528	37	2.1	36	87	5	105	39	9	9	41	1.70
5694--5754	2	31.0	2	91	3	97	45	0	3	50	1.17
5126--5931	301	2.7	299	89	4	1191	37	7	10	44	1.67
6065--6139	2	39.0	2	76	17	70	42	1	2	53	1.23
6200--6234	15	2.3	15	95	0	61	54	42	0	2	1.15
6209--6234	13	2.0	13	100	0	52	53	46	0	0	1.00
6234--6319	13	6.1	13	70	17	64	39	3	8	48	1.50
6303--6356	19	2.7	20	85	5	74	46	1	1	50	1.23
6323--6374	9	5.8	9	80	8	61	44	1	0	53	1.11
6494--6546	21	2.6	21	82	8	56	45	5	1	47	1.37
6564--6611	2	24.5	2	85	4	53	39	2	2	56	1.23
7581--7610	14	2.1	14	93	0	51	26	3	0	70	1.03
10140--10206	30	2.2	32	86	5	93	37	13	17	31	1.89
15489--15514	3	8.7	3	100	0	52	0	30	0	69	0.89
15527--15570	18	2.5	17	82	10	52	2	22	2	72	1.07
16645--16746	3	34.0	3	100	0	204	66	0	33	0	0.92
19264--19312	20	2.4	19	80	10	53	32	6	4	57	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26129--26182	3	18.0	3	84	7	74	62	0	1	35	1.06
26263--26331	22	3.1	22	100	0	138	36	23	17	23	1.95
27341--27395	20	2.8	20	91	0	92	67	7	9	16	1.40
27328--27380	27	1.9	27	84	3	70	69	5	7	16	1.31
27511--27589	23	3.4	24	82	5	99	53	11	7	27	1.64
28495--28530	15	2.5	15	90	4	56	8	19	8	63	1.47
30241--30271	10	3.0	10	95	4	53	77	0	0	22	0.77
32866--32935	34	2.1	34	86	5	99	21	30	15	32	1.94
33282--33342	20	3.0	20	82	0	86	13	29	37	19	1.90
33923--33994	26	2.8	26	97	0	135	40	12	9	37	1.76
36096--36168	20	3.7	19	83	3	83	15	21	39	23	1.91
37098--37145	24	2.0	25	84	12	64	56	4	8	31	1.48
45366--45525	55	2.9	55	85	3	232	34	18	19	27	1.95
45769--45953	94	2.0	94	84	2	246	27	23	17	32	1.96
52125--52337	55	3.9	55	94	0	363	30	19	20	29	1.97
52086--52344	55	4.7	55	89	2	360	30	19	20	29	1.97
52769--52841	22	3.6	20	72	13	60	27	31	13	27	1.94
52694--52895	95	2.1	95	79	4	219	27	24	15	31	1.96
55072--55193	32	3.9	31	79	7	104	20	27	26	26	1.99
55104--55193	31	2.8	32	83	5	103	20	26	27	25	1.99
57713--57740	6	4.7	6	100	0	56	28	17	0	53	1.44
61762--61857	31	3.2	30	67	21	83	34	12	7	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61741--61876	60	2.3	60	96	1	247	33	11	8	47	1.70
62785--62841	31	1.9	30	86	10	82	42	3	21	33	1.70
64354--64406	21	2.3	23	81	15	74	33	26	18	20	1.96
64362--64404	21	2.0	21	95	0	77	32	27	16	23	1.96
64614--64656	15	2.9	15	100	0	86	41	27	0	30	1.56
65779--65829	19	2.5	20	81	15	59	25	27	15	31	1.96

Tables:   1

The End!