genome.fa.s1504.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001504.1 Hibiscus syriacus cultivar Beakdansim tig00002948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149522

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3375--3651	84	3.4	81	79	8	303	33	18	17	30	1.94
3375--3681	83	3.8	80	79	6	305	34	17	17	30	1.94
6537--6602	33	2.0	33	93	0	114	39	9	12	39	1.74
7409--7782	190	2.0	191	86	2	529	44	9	5	40	1.60
16755--16837	28	3.1	28	88	10	113	68	3	10	16	1.33
29540--29838	77	3.9	77	86	2	393	28	19	17	34	1.94
30809--30974	75	2.2	75	85	0	233	33	24	21	21	1.97
32117--32151	15	2.4	15	90	4	54	11	14	0	74	1.08
32116--32152	14	2.4	16	82	13	51	10	13	0	75	1.04
33483--33533	2	25.5	2	100	0	102	50	0	0	49	1.00
35923--35960	20	1.9	20	100	0	76	47	0	0	52	1.00
36733--36777	15	2.9	15	83	3	54	2	13	4	80	0.97
36733--36767	16	2.2	16	90	5	54	2	8	5	82	0.91
39340--39364	10	2.5	10	100	0	50	80	0	8	12	0.92
40911--40952	20	2.1	20	95	0	75	35	16	21	26	1.94
41129--42054	105	8.8	105	97	0	1676	22	18	25	33	1.96
41020--42054	210	5.0	210	95	1	1832	22	18	25	33	1.96
41010--42054	315	3.3	315	94	1	1818	22	18	25	33	1.96
42833--42881	14	3.5	14	83	5	55	0	8	10	81	0.87
53493--53540	2	24.0	2	100	0	96	50	0	0	50	1.00
53610--53662	20	2.7	19	76	18	54	66	1	1	30	1.13
53611--53664	23	2.5	20	81	18	65	66	1	1	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53784--53814	2	15.5	2	93	0	53	48	0	3	48	1.17
55132--55170	15	2.9	14	85	14	55	53	2	0	43	1.14
56618--56647	14	2.1	14	93	0	51	23	13	23	40	1.90
59494--59537	17	2.5	18	82	14	56	47	0	2	50	1.13
70977--71043	16	4.2	16	68	0	53	53	1	2	41	1.25
70984--71021	16	2.2	16	90	9	58	42	0	5	52	1.24
71052--71085	16	2.0	18	88	11	54	26	2	5	64	1.30
71553--71800	130	1.9	130	90	0	397	34	12	15	37	1.85
72197--72272	35	2.2	35	90	4	118	36	1	22	39	1.63
78842--79233	194	2.0	195	97	2	745	34	14	14	36	1.86
79337--79636	148	2.0	150	94	5	538	43	18	11	27	1.84
81026--81054	3	9.7	3	100	0	58	34	0	0	65	0.93
88465--88815	175	2.0	175	89	2	535	39	11	20	29	1.87
92693--92723	16	1.9	16	93	0	53	19	3	22	54	1.58
101110--101474	181	2.0	183	96	3	675	38	13	13	33	1.84
101770--101813	23	1.9	23	100	0	88	29	22	20	27	1.99
106823--106860	15	2.5	15	87	8	51	47	5	0	47	1.24
107098--107139	19	2.3	19	95	4	77	35	11	28	23	1.91
107812--107843	2	16.0	2	100	0	64	50	0	0	50	1.00
110265--110365	27	3.6	28	82	14	111	16	28	34	19	1.94
110446--110483	20	1.9	20	94	0	67	15	13	50	21	1.78
110596--110667	21	3.3	21	69	14	65	16	27	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110584--110653	23	3.1	23	68	15	74	17	27	28	27	1.97
110584--110671	44	2.0	44	97	0	167	18	26	27	28	1.98
111036--111082	20	2.3	21	82	14	62	29	0	17	53	1.44
111035--111117	27	3.1	28	80	13	86	32	0	13	54	1.39
111081--111184	41	2.5	42	80	10	115	42	0	8	48	1.40
111590--111645	16	3.3	16	74	13	58	39	0	10	50	1.37
111594--111623	15	1.9	16	93	6	53	43	0	13	43	1.43
111902--111960	26	2.3	25	75	18	66	47	8	3	40	1.51
114636--114718	34	2.5	34	83	11	93	48	13	0	38	1.42
114759--114850	46	2.0	49	82	8	120	44	13	0	42	1.43
114759--114863	47	2.2	48	81	10	117	45	13	0	40	1.43
115437--115540	29	3.6	29	90	0	154	23	31	28	16	1.96
116864--116939	29	2.6	29	97	0	143	19	43	25	11	1.85
116970--117021	23	2.3	23	89	0	77	25	26	38	9	1.86
116977--117029	23	2.3	24	87	9	83	28	24	35	11	1.90
117106--117197	33	2.8	32	80	6	96	10	34	26	28	1.90
117175--117228	10	5.4	10	79	16	67	9	27	37	25	1.87
117141--117228	43	2.1	40	83	6	104	10	30	31	27	1.90
117175--117228	20	2.7	20	97	0	99	9	27	37	25	1.87
117293--117365	29	2.5	30	90	4	121	13	27	38	20	1.90
123741--123780	19	2.1	19	95	0	71	15	25	42	17	1.88
127134--127174	20	2.0	20	90	0	64	12	26	36	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137191--137219	4	7.2	4	100	0	58	75	0	0	24	0.80
138543--138602	33	1.9	30	90	10	93	38	1	1	58	1.18
141686--141809	31	3.9	32	74	10	121	32	19	18	29	1.96

Tables:   1

The End!