genome.fa.s1505.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001505.1 Hibiscus syriacus cultivar Beakdansim tig00002949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  235039

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2891--2945	23	2.4	23	82	11	76	30	23	34	10	1.89
2961--3022	29	2.1	29	100	0	124	20	32	35	11	1.88
7524--7672	51	2.9	51	93	4	239	38	24	8	29	1.84
8268--8343	35	2.2	35	90	0	116	39	22	1	36	1.63
8737--8982	128	1.9	129	90	1	395	36	15	12	35	1.85
9440--9471	16	2.0	17	88	11	50	65	6	3	25	1.31
9699--9952	140	1.8	140	79	10	295	32	12	20	33	1.91
12373--12424	26	2.0	25	85	10	70	23	9	28	38	1.86
16333--16377	2	22.5	2	100	0	90	51	0	0	48	1.00
16685--16715	2	15.5	2	100	0	62	51	0	0	48	1.00
17367--17402	19	1.9	19	88	5	56	55	22	0	22	1.44
33279--33303	2	12.5	2	100	0	50	48	0	0	52	1.00
34061--34087	10	2.7	10	100	0	54	29	44	18	7	1.77
35483--35544	32	1.9	32	83	0	79	37	11	16	35	1.84
39504--39555	12	4.3	12	85	0	77	40	15	1	42	1.58
39588--39618	12	2.6	12	94	0	53	61	0	3	35	1.12
40170--40211	18	2.4	17	80	11	57	69	2	0	28	1.01
43866--43973	55	2.0	55	85	7	148	28	27	14	28	1.96
43860--43982	55	2.3	55	77	13	146	26	27	14	30	1.95
43973--44587	54	11.5	53	91	4	997	25	25	18	31	1.97
43965--44587	107	5.8	107	94	1	1051	24	25	18	31	1.97
45929--46016	8	10.4	9	81	13	91	10	13	0	76	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45935--46016	26	3.2	25	86	11	114	9	14	0	75	1.04
45929--46015	17	5.2	17	85	11	110	10	13	0	75	1.04
45934--46021	25	3.4	25	80	13	99	10	14	0	75	1.06
52361--52428	21	3.3	21	78	10	77	14	26	17	41	1.88
57175--57202	8	3.5	8	100	0	56	53	0	35	10	1.36
68124--68185	30	2.1	30	100	0	124	48	6	0	45	1.28
68115--68181	30	2.4	27	81	13	89	46	5	1	46	1.36
77006--77103	34	2.9	34	93	0	169	18	8	25	47	1.76
77181--77248	31	2.2	31	83	0	82	30	5	10	52	1.59
79844--79903	31	2.0	30	83	9	77	25	11	8	55	1.63
96943--96969	2	13.5	2	100	0	54	48	0	0	51	1.00
96980--97017	11	3.5	11	89	7	51	60	0	2	36	1.11
98602--98653	23	2.3	23	80	16	63	42	0	1	55	1.10
104513--104574	27	2.3	27	85	2	79	69	1	6	22	1.20
104577--104610	16	2.1	16	88	5	50	76	8	0	14	1.01
104833--104876	22	2.0	21	86	4	61	63	0	6	29	1.20
104833--104871	19	2.0	21	90	10	64	66	0	5	28	1.12
104764--105000	130	1.8	132	87	2	361	57	4	9	29	1.49
105342--105380	20	2.0	20	89	0	60	71	2	0	25	0.98
106301--106342	2	21.5	2	90	4	68	54	0	0	45	0.99
106625--107092	105	4.5	105	95	1	812	23	19	25	32	1.98
107835--107928	48	1.9	49	82	2	118	15	24	13	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117323--117356	10	3.4	10	87	0	50	73	0	2	23	0.97
117328--117385	30	1.9	31	82	3	73	70	1	8	18	1.21
118400--118441	16	2.8	15	83	16	52	76	7	0	16	1.00
118664--118697	16	2.0	18	88	11	54	67	0	5	26	1.13
118595--118847	127	2.0	127	81	6	298	58	4	9	28	1.49
119167--119205	20	2.0	20	89	0	60	71	2	0	25	0.98
130035--130093	2	29.5	2	96	0	109	49	1	0	49	1.11
135742--135784	23	2.0	23	86	9	63	32	0	0	67	0.91
138145--138177	3	11.0	3	100	0	66	66	0	0	33	0.92
139693--139753	23	2.7	23	80	12	63	40	1	3	54	1.27
139738--139812	8	9.5	8	73	20	52	46	1	0	52	1.09
143722--143786	12	5.4	12	80	7	78	12	15	18	53	1.72
143718--143788	24	3.0	24	85	0	106	15	14	18	52	1.75
149722--149890	85	2.0	85	100	0	338	37	10	16	35	1.83
149735--149865	41	3.1	41	61	18	97	40	10	16	32	1.82
158686--158745	10	6.0	10	71	7	50	25	6	11	56	1.59
158689--158748	20	3.0	20	92	0	102	25	6	13	55	1.62
161337--161660	162	2.0	162	99	0	639	30	17	23	28	1.97
171222--171303	15	5.5	15	86	2	112	36	7	20	35	1.81
171216--171303	45	2.0	44	90	2	140	38	6	21	32	1.80
171222--171303	30	2.8	30	92	1	130	36	7	20	35	1.81
171286--171335	20	2.5	20	100	0	100	40	10	16	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171530--171692	28	5.9	26	68	19	91	50	1	1	46	1.20
171530--171590	25	2.3	26	81	15	72	49	1	1	47	1.21
171529--171692	56	3.0	54	74	12	138	50	1	1	46	1.19
171619--171690	32	2.1	32	82	14	83	51	0	2	45	1.15
171646--171701	22	2.6	23	86	8	73	53	0	0	46	1.00
171652--171701	21	2.3	21	86	10	66	54	0	0	46	1.00
171893--172009	42	2.8	42	93	0	198	45	17	21	15	1.85
171895--171955	14	4.3	15	69	12	56	47	14	21	16	1.82
179192--179283	47	2.0	47	95	0	166	36	17	9	35	1.83
191069--191106	17	2.3	17	86	13	53	36	7	0	55	1.29
191066--191107	16	2.4	18	77	22	54	35	7	0	57	1.26
191732--191872	75	1.9	75	87	0	210	43	10	15	30	1.81
192291--192329	16	2.3	17	86	8	53	48	0	17	33	1.48
192498--192867	157	2.3	159	84	3	476	49	5	16	28	1.68
194513--194556	2	22.0	2	100	0	88	50	0	0	50	1.00
196991--197129	66	2.1	66	87	0	197	28	16	24	30	1.96
197012--197244	115	2.0	115	88	0	349	29	15	21	33	1.94
197127--197254	66	1.9	66	85	3	177	28	11	24	35	1.90
197723--197755	17	1.9	17	93	0	57	54	0	12	33	1.37
204118--204187	35	1.9	37	85	5	99	42	2	5	48	1.41
204160--204370	73	2.9	73	75	10	186	44	3	7	45	1.49
204165--204418	35	7.1	36	73	12	175	43	2	7	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204422--204480	4	15.0	4	75	10	59	25	6	0	67	1.15
204422--204486	24	2.7	24	85	4	78	24	7	1	66	1.27
205018--205050	16	2.1	16	88	11	50	75	21	0	3	0.93
205260--205289	12	2.5	12	94	0	51	3	30	56	10	1.48
210925--211869	249	3.8	249	95	1	1598	29	24	20	25	1.99
210925--211869	497	1.9	493	92	1	1588	29	24	20	25	1.99
212517--212842	36	9.1	36	71	14	121	43	2	7	46	1.45
212535--212897	35	10.1	34	75	12	205	41	2	7	48	1.44
212694--212855	73	2.3	70	92	3	261	43	0	7	48	1.35
212694--212899	108	1.9	105	87	5	297	41	0	7	50	1.35
212577--212899	70	4.5	73	79	11	282	43	2	7	47	1.43
212903--212961	4	15.0	4	75	10	59	25	6	0	67	1.15
212903--212967	24	2.7	24	85	4	78	24	7	1	66	1.27
213499--213531	16	2.1	16	88	11	50	75	21	0	3	0.93
213742--213771	12	2.5	12	94	0	51	3	30	56	10	1.48
219319--219429	53	2.1	53	100	0	222	36	11	9	42	1.75
219799--219831	2	16.5	2	100	0	66	48	0	51	0	1.00
220639--221083	226	2.0	223	93	3	759	45	8	7	39	1.61
221313--221358	20	2.4	19	82	10	67	54	10	15	19	1.70
223563--223626	21	3.1	21	77	8	60	39	15	29	15	1.89
225656--227200	197	7.9	199	96	3	2840	36	16	16	30	1.91
225656--227200	390	3.9	394	96	2	2856	36	16	16	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228646--228716	3	24.0	3	78	2	72	33	5	35	25	1.79
229888--230566	180	3.8	181	91	5	1089	36	14	15	33	1.88
233663--233724	21	2.8	23	85	7	83	35	6	20	37	1.79
233687--233738	21	2.5	21	87	6	70	34	1	21	42	1.64
234088--234153	22	3.0	23	86	6	91	34	6	19	39	1.77
234704--234740	18	2.1	18	89	0	56	32	5	10	51	1.60

Tables:   1

The End!