genome.fa.s1507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001507.1 Hibiscus syriacus cultivar Beakdansim tig00002951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70571

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939--978	20	2.0	20	95	0	71	45	7	5	42	1.54
992--1031	20	2.0	21	90	5	64	45	15	5	35	1.68
1045--1083	20	2.0	20	94	0	69	41	17	5	35	1.72
935--1084	52	2.9	52	94	3	257	48	12	6	34	1.65
5625--5664	20	2.0	20	90	0	62	47	7	5	40	1.54
5678--5717	20	2.0	21	90	5	64	45	15	5	35	1.68
5731--5769	20	2.0	20	94	0	69	41	17	5	35	1.72
5621--5770	52	2.9	52	94	3	257	48	12	6	33	1.64
9079--9167	26	3.4	26	100	0	178	20	17	26	34	1.95
16989--17285	123	2.4	123	82	6	354	29	18	9	41	1.83
16989--17285	122	2.4	121	82	7	361	29	18	9	41	1.83
17615--17654	20	2.0	21	85	5	55	35	22	17	25	1.95
20628--20934	117	2.7	116	77	8	315	33	21	15	29	1.94
22123--22157	17	2.1	17	88	0	52	71	0	0	28	0.86
23930--23988	30	2.0	29	83	9	75	37	8	22	32	1.84
23935--24089	77	2.0	76	93	1	265	34	9	26	29	1.88
36535--36982	163	2.8	160	82	3	533	26	17	17	37	1.93
42366--42441	13	5.3	13	77	17	71	15	43	22	18	1.88
42348--42426	31	2.5	31	91	0	131	16	46	20	16	1.84
42384--42446	8	8.2	8	75	20	64	15	38	25	20	1.92
42344--42420	18	4.6	18	78	15	92	16	49	19	14	1.80
42402--42446	15	3.1	15	90	6	67	15	35	26	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43759--43793	18	1.9	18	88	0	52	54	0	17	28	1.43
44968--45037	12	5.8	12	78	6	70	15	14	18	51	1.77
44931--45041	48	2.3	48	87	3	152	19	14	17	48	1.81
44931--45041	24	4.6	24	77	2	116	19	14	17	48	1.81
44974--45025	17	2.8	18	72	21	54	15	15	19	50	1.79
47174--47249	13	5.3	13	75	17	62	18	42	21	18	1.90
47152--47197	18	2.6	18	100	0	92	17	52	17	13	1.75
47156--47234	31	2.5	31	87	0	113	18	45	18	16	1.86
47192--47276	8	10.5	8	74	21	63	17	36	24	21	1.94
47226--47257	7	4.4	7	92	7	55	12	34	28	25	1.92
47223--47266	15	2.8	15	93	6	70	13	34	29	22	1.93
48567--48601	18	1.9	18	88	0	52	54	0	17	28	1.43
49780--49849	12	5.8	12	78	6	70	15	14	18	51	1.77
49743--49853	48	2.3	48	87	3	152	19	14	17	48	1.81
49743--49853	24	4.6	24	77	2	116	19	14	17	48	1.81
49786--49837	17	2.8	18	72	21	54	15	15	19	50	1.79
50743--50781	3	13.7	3	84	10	55	30	0	0	69	0.89
52621--52680	5	12.0	5	75	7	59	21	0	3	75	0.95
52623--52679	21	2.8	21	82	12	66	21	0	3	75	0.95
55243--55423	45	4.0	44	90	5	258	30	20	7	40	1.81
59502--59531	2	15.0	2	100	0	60	50	0	0	50	1.00
62400--62581	45	4.1	44	91	4	269	31	21	7	39	1.81

Tables:   1

The End!