genome.fa.s1509.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001509.1 Hibiscus syriacus cultivar Beakdansim tig00002954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81796

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15805--15843	20	2.0	20	89	0	60	33	23	10	33	1.88
25971--26024	18	2.9	18	94	2	90	31	9	11	48	1.70
26247--26333	36	2.4	36	94	1	149	24	31	18	26	1.98
29118--29399	30	9.4	30	94	2	496	33	23	19	24	1.97
29118--29399	89	3.1	89	94	2	485	33	23	19	24	1.97
31910--32215	158	2.0	150	94	5	531	22	26	16	34	1.95
34016--34145	29	4.4	30	91	4	203	30	23	19	26	1.98
35084--35126	21	2.0	21	81	0	50	18	25	27	27	1.98
42977--43030	24	2.2	24	80	3	63	42	0	3	53	1.18
45684--45730	11	4.4	11	75	5	51	19	4	17	59	1.53
47064--47524	36	12.8	36	88	0	654	31	24	25	18	1.97
47624--47717	11	8.7	11	81	4	120	15	4	20	59	1.53
47624--47717	21	4.4	22	85	5	129	15	4	20	59	1.53
47624--47725	32	3.2	32	92	0	168	14	3	22	58	1.52
48987--49039	12	4.6	11	77	13	54	81	0	1	16	0.79
50842--50896	3	17.7	3	78	14	58	65	0	1	32	1.03
50840--50896	20	2.8	19	82	10	69	64	0	3	31	1.10
51216--51474	139	1.9	139	87	1	385	27	15	27	30	1.96
51540--51769	37	6.4	37	78	8	233	37	14	17	30	1.90
51668--51768	20	5.4	19	64	30	56	39	15	18	25	1.91
51700--51763	22	3.2	22	67	28	70	37	18	17	26	1.93
51675--51735	17	3.4	17	68	27	54	37	16	16	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51472--51732	104	2.5	104	88	4	402	37	14	16	31	1.88
51507--51826	141	2.3	136	75	16	328	35	13	16	34	1.88
57434--57497	23	2.8	23	85	4	76	28	15	26	29	1.96
58559--58741	60	3.0	61	75	12	198	32	21	4	42	1.72
72903--72967	32	2.0	32	93	0	112	47	3	6	43	1.43
80756--80947	96	2.0	94	80	5	215	56	7	5	30	1.50

Tables:   1

The End!