genome.fa.s1513.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001513.1 Hibiscus syriacus cultivar Beakdansim tig00002959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66383

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5501--5533	17	2.0	17	88	5	50	33	0	6	60	1.21
6022--6048	8	3.4	8	100	0	54	77	0	0	22	0.76
7991--8067	31	2.6	31	82	12	99	29	2	6	61	1.35
10308--10341	9	3.7	9	92	4	50	76	0	0	23	0.79
10307--10338	14	2.2	15	94	5	57	75	0	0	25	0.81
11409--11448	21	1.9	21	89	0	62	17	22	17	42	1.89
11404--11456	21	2.5	21	78	0	61	20	24	18	35	1.95
11446--11559	20	5.7	20	88	2	174	38	21	21	19	1.93
11431--11557	41	3.1	40	81	7	157	36	21	20	22	1.95
12127--12180	14	3.5	14	73	22	54	44	20	25	9	1.81
12100--12201	19	5.9	18	67	22	67	44	19	24	11	1.84
12106--12201	33	2.9	33	92	1	147	42	20	25	11	1.85
12221--12297	20	3.9	19	81	6	100	12	23	18	45	1.84
13959--14334	94	4.1	93	92	3	582	22	11	18	47	1.81
14425--14487	19	3.3	19	91	4	90	49	20	22	7	1.75
15033--15099	21	3.2	21	66	6	55	23	35	20	19	1.95
14981--15099	42	2.8	42	76	12	102	23	36	17	22	1.95
16450--16485	14	2.6	14	95	0	63	33	0	22	44	1.53
16590--16636	19	2.5	19	96	0	85	44	21	21	12	1.85
16661--16778	19	6.7	19	66	19	67	12	23	19	44	1.85
16665--16758	33	2.8	33	90	0	152	12	23	18	45	1.83
16731--16824	20	4.7	20	72	13	68	21	20	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19064--19100	14	2.6	14	86	4	56	5	16	21	56	1.59
20204--20399	61	3.2	60	79	7	191	29	17	18	34	1.94
20258--20411	41	3.8	41	85	2	188	25	18	18	37	1.94
20204--20411	20	10.3	20	79	7	172	28	17	19	34	1.95
20258--20433	41	4.3	41	82	2	178	27	18	19	35	1.95
22193--22369	41	4.4	41	94	4	324	19	19	24	36	1.95
22218--22375	20	7.9	20	70	8	124	17	20	23	37	1.94
22193--22369	79	2.2	80	95	3	320	19	19	24	36	1.95
22460--22508	6	8.5	6	93	2	75	32	53	14	0	1.41
22865--22920	14	4.3	14	76	17	66	10	12	23	53	1.69
22872--22941	24	2.9	24	87	4	97	12	10	18	58	1.62
23667--23733	16	4.3	16	92	3	102	10	10	19	59	1.58
23665--23725	32	1.9	32	96	0	113	8	13	22	55	1.64
24200--24314	6	19.5	6	99	0	216	0	16	51	32	1.45
24405--24445	21	2.0	21	85	0	55	34	29	17	19	1.94
25452--25529	36	2.1	36	83	6	95	46	1	3	48	1.28
25504--25551	18	2.7	18	80	9	62	54	4	0	41	1.20
26463--26573	20	5.6	20	77	8	84	41	26	11	20	1.87
26656--26710	20	2.8	19	83	8	74	14	16	21	47	1.82
28523--28571	21	2.3	21	82	0	53	20	14	30	34	1.92
28668--28713	4	11.5	4	85	0	65	26	2	2	69	1.11
28858--28933	21	3.6	21	78	7	91	25	32	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30286--30441	64	2.4	65	90	4	244	32	1	14	50	1.54
31338--31508	83	2.1	83	92	0	279	28	19	19	32	1.96
31637--31673	18	2.1	18	94	0	65	51	8	5	35	1.55
32063--32112	25	2.0	25	92	0	82	44	20	8	28	1.79
32186--32227	20	2.1	20	100	0	84	38	26	21	14	1.91
34813--34866	24	2.2	24	93	0	90	42	18	16	22	1.89
34829--34880	24	2.2	24	85	0	68	38	21	17	23	1.93
35816--35878	19	3.3	19	90	2	90	31	12	23	31	1.92
44349--44399	18	2.8	18	96	3	93	66	3	11	17	1.38
51669--51698	16	1.9	15	93	6	51	83	0	0	16	0.65

Tables:   1

The End!