Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001514.1 Hibiscus syriacus cultivar Beakdansim tig00002961_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92458

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6847--6911
2
32.5
2
100
0
130
49
0
0
50
1.00
7426--7456
4
7.8
4
100
0
62
74
0
0
25
0.82
8349--8375
4
6.8
4
100
0
54
74
0
0
25
0.83
7282--9117
919
2.0
921
98
0
3534
33
23
17
25
1.96
14371--14513
27
5.3
27
100
0
286
44
0
0
55
0.99
14371--14544
81
2.1
81
89
2
251
41
0
2
56
1.12
16866--16937
3
23.3
3
78
5
72
33
1
4
61
1.24
19065--19426
131
2.8
127
79
5
386
33
11
14
40
1.82
22823--22971
72
2.1
72
90
0
235
32
12
32
22
1.91
32042--32083
21
2.0
21
95
0
75
23
21
28
26
1.99
34703--34744
21
2.0
21
85
0
57
21
35
26
16
1.94
34873--34914
21
2.0
21
95
0
75
23
21
28
26
1.99
34943--34982
20
1.9
21
85
10
55
37
37
10
15
1.80
35198--35267
34
2.1
32
81
5
77
31
14
28
25
1.95
37791--37874
22
3.8
22
78
9
89
22
28
25
23
1.99
39453--39493
18
2.3
18
91
8
66
48
21
29
0
1.50
42240--42288
22
2.2
22
89
7
73
81
4
10
4
0.95
42240--42293
11
4.8
11
76
13
56
81
3
11
3
0.95
42246--42293
15
2.9
16
77
17
53
81
4
12
2
0.93
43477--44047
267
2.1
265
85
4
774
31
23
15
28
1.96
43477--44047
134
4.3
134
85
3
726
31
23
15
28
1.96
44217--44259
3
14.3
3
82
0
50
30
2
2
65
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44831--44855
5
5.0
5
100
0
50
0
20
60
20
1.37
46765--47109
131
2.6
131
84
1
444
31
12
16
39
1.87
50650--50685
17
2.1
17
89
0
54
47
2
16
33
1.61
70375--70413
17
2.4
16
87
12
53
23
2
0
74
0.94
73349--73378
2
15.0
2
100
0
60
50
0
0
50
1.00
78434--78553
22
5.5
22
85
4
154
28
24
18
29
1.98
78435--78553
42
2.8
42
90
2
175
27
24
18
29
1.98
81446--81807
54
6.7
54
91
1
539
25
19
21
33
1.97
83594--83653
21
3.0
20
82
4
75
31
25
18
25
1.97

Tables:   1

The End!