genome.fa.s1515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001515.1 Hibiscus syriacus cultivar Beakdansim tig00002962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78681

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4751--4814	32	1.9	33	87	6	94	45	1	1	51	1.20
7015--7234	48	4.6	48	86	0	298	18	31	27	22	1.97
7826--7872	20	2.4	20	85	3	69	40	25	10	23	1.87
7910--7949	20	2.0	20	95	0	71	27	15	25	32	1.95
7943--8006	20	3.2	20	69	8	67	40	23	12	23	1.88
8047--8093	20	2.3	20	96	0	85	27	12	27	31	1.93
8002--8150	77	1.9	77	84	0	199	30	13	20	34	1.91
8065--8264	57	3.5	57	89	0	310	27	14	22	36	1.93
8236--8284	20	2.5	20	86	0	71	26	16	24	32	1.96
8186--8345	77	2.1	77	87	4	225	28	15	19	36	1.92
8336--8432	21	4.7	21	74	5	81	30	13	22	32	1.93
8315--8432	62	1.9	62	91	0	191	29	14	22	33	1.93
8569--8685	60	2.0	57	90	5	180	25	24	11	37	1.90
9045--9284	120	2.0	119	88	0	354	39	14	12	33	1.83
9804--9836	17	1.9	17	88	11	50	57	0	0	42	0.98
13167--13219	26	2.0	26	100	0	106	43	0	18	37	1.51
13498--13544	11	4.0	12	77	22	55	25	0	19	55	1.43
14171--14210	16	2.5	16	100	0	80	10	10	22	57	1.61
17730--18420	54	12.8	55	81	7	647	33	19	18	29	1.95
17726--18420	108	6.4	109	83	5	729	33	18	18	29	1.95
17727--18427	268	2.6	268	85	5	898	33	19	18	29	1.95
18584--18751	81	2.1	81	84	4	214	35	10	21	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20204--20236	2	17.0	2	93	6	59	51	0	0	48	1.00
20222--20278	21	2.6	21	83	5	69	36	0	8	54	1.32
21483--21541	22	2.5	23	86	13	77	52	1	5	40	1.33
21483--21558	24	3.1	24	75	24	70	52	1	3	42	1.28
22277--22363	31	2.8	31	89	3	131	49	9	10	31	1.68
23162--23334	48	3.6	47	86	6	215	18	32	26	21	1.97
27428--27459	6	5.3	6	96	0	55	34	18	28	18	1.95
33405--33554	72	2.1	71	80	9	171	52	8	10	28	1.65
34021--34130	21	4.9	21	71	24	91	51	7	1	39	1.40
34009--34152	71	2.0	71	98	0	279	47	9	2	40	1.51
34213--34257	23	1.9	24	86	4	65	42	11	0	46	1.39
35665--36666	508	2.0	508	99	0	1986	24	27	16	30	1.97
44285--44333	19	2.6	19	93	0	80	24	14	28	32	1.94
44589--44652	19	3.4	19	70	8	58	39	12	4	43	1.63
51639--51684	14	3.1	14	93	6	74	15	15	17	52	1.76
52427--52540	3	38.0	3	90	0	156	39	0	0	59	1.03
52988--53022	14	2.5	14	100	0	70	57	20	22	0	1.41
52990--53051	21	3.0	21	80	2	63	64	19	14	1	1.37
58686--58731	18	2.6	18	89	0	65	28	10	10	50	1.71
59120--59190	3	23.7	3	100	0	142	32	0	0	67	0.91
63421--63604	65	2.9	61	80	10	199	27	19	23	29	1.98
63447--63646	65	3.1	64	81	10	194	27	18	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63952--63984	12	2.7	12	95	4	57	48	0	9	42	1.35
72124--72172	19	2.7	17	84	9	53	26	20	28	24	1.99
72118--72303	65	2.9	64	84	7	234	26	20	23	29	1.99
72143--72353	65	3.3	64	78	12	216	27	19	23	29	1.98
75327--75397	33	2.1	34	92	7	119	38	11	8	42	1.71

Tables:   1

The End!