genome.fa.s1518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001518.1 Hibiscus syriacus cultivar Beakdansim tig00002966_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63081

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4088--4135	23	2.2	22	88	7	71	37	0	2	60	1.09
4108--4159	25	2.0	26	85	3	70	34	0	5	59	1.21
4494--4535	19	2.2	20	86	4	59	50	0	2	47	1.14
4834--4877	22	2.0	22	86	13	63	47	0	2	50	1.13
4829--4880	11	5.0	11	77	11	56	48	0	1	50	1.12
7151--7197	21	2.2	21	81	7	60	61	10	10	17	1.55
7559--7624	32	2.1	32	100	0	132	25	12	9	53	1.67
11788--12948	579	2.0	579	97	0	2214	33	9	16	39	1.82
13895--13952	27	2.1	28	90	3	91	56	0	3	39	1.16
13946--14030	24	3.5	24	80	6	100	43	4	2	49	1.36
13950--14158	13	17.0	13	67	21	85	45	6	3	44	1.46
14109--14160	24	2.2	24	86	6	70	48	7	3	40	1.50
14138--14187	22	2.3	21	86	10	66	44	6	4	46	1.47
14505--14563	13	4.5	13	72	16	50	45	8	3	42	1.51
14553--14596	22	2.0	22	86	0	61	43	13	2	40	1.57
14585--14630	22	2.1	22	91	0	74	47	8	4	39	1.54
16703--16819	60	2.0	60	87	3	173	28	36	16	18	1.92
18908--18967	26	2.3	26	88	0	93	31	23	21	23	1.98
20992--21016	11	2.3	11	100	0	50	60	0	20	20	1.37
22838--22880	21	2.0	21	100	0	86	32	18	9	39	1.83
26814--26882	23	3.0	23	81	8	86	27	24	26	21	1.99
26898--27110	103	2.1	103	96	0	390	36	23	14	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32056--32124	23	3.0	23	82	0	84	26	23	27	23	2.00
32144--32344	103	2.0	103	93	0	348	37	23	10	28	1.88
35751--35785	12	2.9	12	82	0	52	31	22	14	31	1.94
36281--36332	19	2.6	21	87	9	58	30	28	19	21	1.97
36287--36332	19	2.4	19	96	0	83	26	32	21	19	1.97
39165--39224	29	2.0	30	90	6	95	33	6	18	41	1.76
39314--39394	22	4.0	22	75	21	88	22	38	27	12	1.90
39314--39394	21	4.1	21	77	19	93	22	38	27	12	1.90
39342--39371	15	2.0	15	100	0	60	26	33	26	13	1.93
39486--39549	21	3.0	21	97	0	119	23	20	28	28	1.99
39577--39616	20	1.9	21	90	10	64	40	37	10	12	1.77
39831--39900	34	2.1	32	89	5	104	31	15	31	21	1.95
40760--40807	19	2.5	20	82	3	62	52	6	12	29	1.63
42071--42130	29	2.0	30	90	6	95	33	6	18	41	1.76
42220--42299	21	4.1	21	78	18	100	22	37	27	12	1.90
42226--42297	36	2.0	36	94	0	126	23	34	27	13	1.93
42247--42276	15	2.0	15	100	0	60	26	33	26	13	1.93
42394--42433	21	1.9	21	94	0	71	25	22	30	22	1.99
42461--42500	20	1.9	22	90	10	66	37	40	10	12	1.77
42715--42784	34	2.1	32	89	5	104	31	15	31	21	1.95
43078--43116	20	2.0	20	100	0	78	25	15	12	46	1.81
45496--45542	18	2.5	20	76	10	55	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47540--47583	17	2.7	17	80	19	58	40	2	0	56	1.11
47567--47612	23	2.0	23	95	0	83	34	15	0	50	1.44
48719--48890	56	3.1	56	89	0	247	29	16	13	40	1.87
48738--48951	56	3.9	56	85	4	222	30	16	11	41	1.84
51451--51498	20	2.4	19	80	10	51	54	8	2	35	1.42
58902--58943	14	2.9	15	92	7	77	30	0	26	42	1.55
58902--58949	14	3.4	14	85	5	69	29	0	25	45	1.53
59149--59191	21	2.0	21	95	0	77	23	16	27	32	1.96
61615--61747	60	2.3	60	92	5	220	48	7	12	32	1.68
62135--62165	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1

The End!