genome.fa.s1519.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001519.1 Hibiscus syriacus cultivar Beakdansim tig00002967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75413

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929--953	12	2.1	12	100	0	50	8	8	36	48	1.62
1178--1216	20	2.0	20	94	0	69	35	17	17	28	1.94
1216--1270	19	2.7	21	73	21	62	27	7	29	36	1.84
1687--1737	21	2.4	21	86	0	66	33	27	17	21	1.96
1768--1858	41	2.2	41	94	0	155	21	15	24	38	1.92
1762--1833	21	3.5	21	72	11	76	18	16	25	40	1.91
3501--3545	23	2.0	23	82	8	56	51	0	6	42	1.28
4226--4286	33	1.9	31	83	6	77	59	1	0	39	1.08
22133--22189	24	2.4	24	90	0	96	7	24	22	45	1.77
27589--27654	23	2.6	27	86	11	88	45	0	1	53	1.09
27559--27708	62	2.5	60	90	7	223	42	0	2	54	1.19
27593--27688	12	8.1	12	67	22	60	45	0	1	53	1.07
27559--27744	62	3.0	58	84	10	171	41	1	2	54	1.22
28366--28425	31	1.9	31	89	0	93	46	8	6	38	1.60
28406--28724	159	2.0	160	99	0	631	30	17	14	37	1.90
33459--33512	19	2.8	19	97	0	99	38	16	16	27	1.90
33641--33681	21	2.0	22	90	9	68	31	14	17	36	1.90
34411--34509	43	2.3	43	84	5	119	50	5	19	25	1.67
34517--34698	43	4.3	42	78	13	151	48	6	19	25	1.73
35862--35924	22	2.9	21	77	13	56	15	12	19	52	1.74
35895--35961	14	5.1	14	84	14	97	13	13	16	56	1.67
35881--35960	24	3.2	24	87	8	99	16	13	15	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35862--35946	10	8.5	10	67	14	50	16	12	16	54	1.72
36229--36284	14	4.1	14	79	4	60	10	8	16	64	1.49
36284--36447	71	2.5	61	75	20	179	30	9	12	47	1.73
36329--36361	16	2.1	16	100	0	66	12	12	18	57	1.64
36256--36426	71	2.4	71	91	3	276	24	9	12	52	1.70
42162--42215	24	2.2	24	100	0	108	33	50	5	11	1.61
43527--43771	74	3.3	72	81	10	225	55	5	4	33	1.45
44880--44960	42	1.9	43	82	7	103	28	13	6	51	1.65
46066--46131	32	2.0	33	85	2	89	15	21	19	43	1.87
47026--47072	23	2.0	24	88	12	71	38	4	6	51	1.47
51031--51270	51	4.9	46	80	11	118	25	14	15	45	1.83
51070--51270	51	4.0	51	87	2	262	25	12	13	47	1.79
51070--51270	101	2.0	102	88	2	298	25	12	13	47	1.79
53614--53653	21	1.9	21	90	10	64	55	5	7	32	1.50
57460--57539	23	3.6	22	79	6	99	23	25	25	26	2.00
59400--59465	26	2.5	25	78	9	69	16	37	22	22	1.93
59466--59624	29	5.7	29	78	8	159	28	4	25	41	1.74
59495--59632	28	5.0	27	75	9	118	32	3	23	40	1.72
66748--66811	18	3.6	18	89	4	103	17	45	21	15	1.85
66819--66997	29	6.3	29	78	8	172	29	6	22	41	1.78
66853--66958	55	1.9	55	86	5	151	34	4	20	39	1.74
66824--66988	84	2.0	84	86	4	235	30	5	22	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66852--66997	28	5.2	28	73	12	102	32	6	20	40	1.77
68887--68923	18	2.1	18	100	0	74	40	27	16	16	1.89
70863--70900	16	2.3	17	86	4	51	47	2	0	50	1.15
72514--72561	23	2.2	22	88	7	71	37	0	2	60	1.09
72534--72585	25	2.0	26	85	3	70	34	0	5	59	1.21
72917--72957	19	2.2	19	86	8	57	51	0	2	46	1.14
72919--72959	10	4.2	10	78	15	50	53	0	2	43	1.13
73256--73299	22	2.0	22	86	13	63	47	0	2	50	1.13
73251--73302	11	5.0	11	77	11	56	48	0	1	50	1.12

Tables:   1

The End!