genome.fa.s152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000152.1 Hibiscus syriacus cultivar Beakdansim tig00000271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141505

Tables:   1   2   

This is table  1  of  2  ( 121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1475--1588	31	3.7	31	79	15	112	29	16	20	33	1.95
2444--2546	12	8.7	12	71	14	70	29	5	21	43	1.75
2444--2531	24	3.7	24	81	6	90	28	5	22	43	1.76
2455--2548	36	2.6	36	86	5	120	27	7	21	43	1.79
7758--7798	19	2.2	19	86	8	57	68	0	29	2	1.03
23236--23263	3	9.3	3	100	0	56	32	0	0	67	0.91
23669--23710	18	2.2	19	83	8	50	64	0	4	30	1.14
25992--26021	3	10.0	3	100	0	60	0	33	0	66	0.92
29630--29689	5	11.8	5	81	10	50	10	21	48	20	1.78
29623--29660	17	2.2	17	90	0	58	10	23	47	18	1.79
36881--36906	13	2.0	13	100	0	52	23	30	30	15	1.95
36883--36923	12	3.3	12	89	3	55	14	26	41	17	1.88
36878--36906	7	4.3	7	91	8	51	24	31	27	17	1.97
36903--36952	5	9.8	5	79	12	57	4	22	52	22	1.64
43510--43539	15	2.0	15	100	0	60	33	0	40	26	1.57
45474--45516	2	21.5	2	100	0	86	48	0	0	51	1.00
50468--50517	19	2.7	19	96	3	93	60	0	8	32	1.26
50843--50893	18	2.8	18	85	14	70	49	3	1	45	1.32
51071--51126	14	4.2	14	77	13	64	7	10	25	57	1.58
51047--51146	24	4.1	24	80	5	103	12	12	21	55	1.68
52443--52511	23	3.0	22	79	12	68	50	5	4	39	1.46
52541--52579	18	2.2	18	100	0	78	43	0	46	10	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52628--52688	19	3.2	19	79	9	79	42	0	29	27	1.56
53462--53506	21	2.1	21	92	8	74	11	26	42	20	1.85
54019--54049	2	16.0	2	93	6	55	51	0	0	48	1.00
54101--54168	7	9.6	7	78	1	73	44	36	0	19	1.51
54211--54264	24	2.2	25	93	6	92	51	3	5	38	1.43
54237--54279	17	2.6	17	82	10	54	46	4	4	44	1.45
54347--54385	21	1.9	20	89	5	60	46	25	0	28	1.53
54341--54392	21	2.4	21	76	20	54	46	26	0	26	1.53
54766--54844	27	2.9	28	71	21	53	46	2	6	44	1.42
54769--54810	2	20.0	2	85	9	57	50	2	2	45	1.27
54893--54946	21	2.6	21	87	0	72	50	22	1	25	1.59
54208--55604	558	2.5	556	83	9	1745	43	10	8	37	1.70
55308--55390	2	41.0	2	97	2	157	49	0	1	49	1.08
55694--55740	14	3.7	14	71	26	50	51	4	0	44	1.21
55692--55741	23	2.1	24	96	3	93	48	4	0	48	1.20
57342--57378	19	1.9	19	94	0	65	0	18	21	59	1.38
60152--60281	69	1.9	68	93	1	224	23	14	13	47	1.80
60327--60385	22	2.7	22	97	0	109	30	0	3	66	1.08
60831--60877	20	2.3	21	78	10	62	25	0	4	70	1.05
60871--60934	19	3.5	18	71	10	58	28	1	4	65	1.21
62249--62287	15	2.6	15	83	0	51	20	0	38	41	1.53
70119--70158	19	2.0	20	95	4	73	50	0	7	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71045--71070	4	6.5	4	100	0	52	23	0	0	76	0.78
74204--74249	6	7.3	6	80	9	56	17	17	17	47	1.83
74209--74247	20	2.0	20	94	0	69	17	17	17	46	1.85
75018--75042	3	8.3	3	100	0	50	68	0	32	0	0.90
75454--75523	14	5.0	13	72	16	59	81	0	17	1	0.77
75438--75483	24	1.9	24	86	0	65	76	0	15	8	1.02
75454--75521	9	8.1	9	76	12	56	82	0	16	1	0.75
75438--75521	17	5.1	17	75	17	70	79	0	15	4	0.89
75461--75564	4	26.0	4	71	11	70	75	0	20	3	0.95
77471--77767	90	3.3	90	94	0	506	25	18	20	35	1.95
77815--77904	37	2.4	37	79	3	110	30	20	8	41	1.82
77899--78271	67	5.6	67	76	12	313	27	20	13	39	1.90
77965--78266	66	4.5	68	78	14	310	24	21	13	39	1.90
77965--78271	133	2.3	133	94	1	526	25	21	13	39	1.90
78668--79205	91	5.9	91	91	0	745	38	15	21	24	1.92
79217--79450	44	5.4	44	73	6	172	31	23	20	25	1.98
79293--79458	88	1.9	88	89	0	260	31	22	19	25	1.98
79350--79768	132	3.2	128	76	11	392	31	21	19	27	1.97
86154--86633	241	2.0	240	94	1	836	37	12	13	35	1.83
87091--87227	73	1.9	74	93	1	240	45	14	6	32	1.71
94254--94307	14	4.1	14	75	18	62	11	11	22	55	1.66
94259--94328	24	2.9	24	87	4	97	12	10	18	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95054--95128	10	7.7	10	69	21	61	9	12	21	57	1.62
95060--95124	16	4.1	16	95	0	121	7	12	23	56	1.61
95194--95226	16	2.1	16	94	0	57	6	9	24	60	1.49
98854--98898	17	2.6	18	78	3	56	37	6	24	31	1.81
99502--99546	22	2.0	22	100	0	90	44	20	8	26	1.80
101266--101292	14	1.9	14	100	0	54	48	7	0	44	1.31
101429--101483	18	3.2	18	74	7	51	32	0	1	65	1.03
102503--102552	19	2.6	19	84	6	57	34	0	0	66	0.92
102748--102929	93	2.0	91	94	2	319	51	7	13	28	1.67
103310--103345	2	18.0	2	100	0	72	50	0	0	50	1.00
104991--105049	29	2.0	29	96	0	109	50	13	11	23	1.74
109675--109733	29	2.0	29	100	0	118	49	13	13	23	1.78
111213--111237	12	2.1	12	100	0	50	8	44	8	40	1.63
117102--117477	162	2.3	162	82	5	449	36	15	11	36	1.84
119036--119072	19	1.9	19	88	0	56	40	2	13	43	1.58
118935--119089	2	76.5	2	75	9	136	50	1	5	41	1.34
119459--119558	10	9.5	10	74	18	87	54	2	7	37	1.39
119457--119554	16	6.4	16	70	23	70	55	2	7	35	1.39
119461--119558	22	4.7	20	77	9	97	54	2	7	36	1.40
119475--119571	14	7.3	14	75	11	53	51	2	8	38	1.44
119461--119570	10	10.0	11	72	18	72	52	1	8	37	1.42
119927--120023	48	2.0	48	93	0	167	48	18	9	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121074--121112	20	2.0	20	94	0	69	30	15	20	33	1.94
125095--125154	28	2.1	28	93	6	104	40	3	43	13	1.60
125544--125598	2	27.5	2	100	0	110	50	0	0	49	1.00
125762--125948	94	2.0	94	92	0	311	45	6	12	34	1.69
126218--126260	16	2.8	15	86	6	68	41	11	18	27	1.85
126309--126374	27	2.4	27	89	0	105	31	16	15	36	1.90
126391--126453	20	3.0	20	88	4	90	33	20	14	31	1.92
126731--126772	21	2.0	22	85	4	59	50	2	2	45	1.27
126822--126859	14	2.8	13	84	7	58	52	0	5	42	1.24
126992--127024	16	2.1	16	94	0	57	48	12	15	24	1.78
127045--127075	16	1.9	16	93	0	53	41	12	12	32	1.81
128755--128805	19	2.7	19	96	0	93	29	27	21	21	1.99
128853--128905	21	2.5	21	84	0	70	20	22	18	37	1.94
128897--129007	20	5.6	20	96	0	204	39	18	20	21	1.92
129004--129060	20	2.8	20	91	0	78	31	21	19	28	1.97
129902--129955	24	2.2	24	90	0	81	22	16	20	40	1.91
130146--130181	14	2.5	14	90	4	54	58	22	13	5	1.56
131240--131333	20	4.7	20	86	2	136	35	24	21	19	1.96
131305--131399	33	2.8	33	90	3	136	43	20	23	13	1.87
131583--131619	14	2.6	14	86	0	56	48	21	0	29	1.50
133004--133112	42	2.6	42	77	11	116	23	19	35	21	1.96
133592--133680	20	4.4	20	88	0	97	38	23	16	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133740--133791	20	2.6	20	84	0	77	21	17	21	40	1.91
135690--135757	20	3.4	20	87	0	91	41	25	14	19	1.89
135730--135802	33	2.2	34	85	7	96	41	26	19	13	1.88
136137--136193	22	2.6	22	91	0	87	24	14	40	21	1.90
136388--136440	20	2.7	20	93	0	88	18	18	22	39	1.92
136437--136482	21	2.2	21	92	0	74	39	17	26	17	1.91
136470--136515	20	2.3	20	96	0	83	34	19	23	21	1.96
139329--139409	4	20.2	4	94	5	146	0	50	24	24	1.49
139407--139450	4	11.2	4	95	4	81	22	50	0	27	1.50
140813--140883	29	2.7	26	74	16	74	45	1	0	53	1.09

Tables:   1   2