Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01000152.1 Hibiscus syriacus cultivar Beakdansim tig00000271_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 141505
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 2 of 2

Found at i:141088 original size:23 final size:24

Alignment explanation


    Indices: 141044--141091  Score: 71
    Period size: 23  Copynumber: 2.0  Consensus size: 24

     141034 ATTTTTAAAT

                            **      
     141044 TAAGTTAATAATAAAATGTATTAA
          1 TAAGTTAATAATAAAAAATATTAA

                                    
     141068 TAAGTTAAT-ATAAAAAATATTAA
          1 TAAGTTAATAATAAAAAATATTAA

             
     141091 T
          1 T

     141092 TAAAGTTGAT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  23   13  0.59
  24    9  0.41

ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38


Consensus pattern (24 bp):   
TAAGTTAATAATAAAAAATATTAA

Done.