genome.fa.s1520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001520.1 Hibiscus syriacus cultivar Beakdansim tig00002968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65276

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311--429	21	5.6	22	81	8	140	21	38	17	21	1.93
311--429	42	2.8	42	88	2	168	21	38	17	21	1.93
1136--1197	17	3.4	18	78	14	58	74	3	19	3	1.10
1137--1186	12	4.2	12	82	14	59	76	2	22	0	0.89
5840--5873	13	2.6	13	100	0	68	5	5	29	58	1.45
5896--5921	7	3.7	7	100	0	52	30	0	0	69	0.89
5913--5947	16	2.2	16	89	0	52	28	8	8	54	1.60
8307--8395	4	18.8	5	76	15	50	74	5	1	19	1.08
8352--8395	13	3.4	13	81	9	54	77	6	0	15	0.97
8410--8461	3	17.0	3	78	11	52	65	1	5	26	1.26
18786--18864	24	3.3	24	98	0	149	36	8	30	24	1.86
19283--19328	22	2.1	22	87	0	65	28	23	21	26	1.99
19299--19341	22	2.0	22	85	0	59	32	18	20	27	1.96
24646--24676	3	10.7	3	93	6	55	70	0	0	29	0.87
24643--24676	11	3.0	11	95	4	59	70	0	0	29	0.87
24748--24896	3	50.3	3	76	12	87	72	3	2	21	1.12
24758--24840	23	3.7	22	78	16	82	79	4	1	14	0.95
24779--24855	5	15.4	5	85	8	54	77	2	1	18	0.95
26012--26047	18	2.0	18	94	0	63	52	5	11	30	1.59
31611--31658	23	2.1	23	88	0	69	37	10	16	35	1.83
31862--31928	30	2.2	29	82	10	73	43	0	4	52	1.21
32088--32146	23	2.6	23	88	0	82	40	16	5	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32569--32654	39	2.2	39	93	0	145	18	13	18	48	1.80
32912--32956	23	1.9	24	86	4	65	48	15	2	33	1.57
33381--33443	23	2.7	23	92	0	99	38	20	4	36	1.74
33380--33455	23	3.5	22	85	5	75	35	22	5	36	1.77
33783--33848	25	2.6	25	80	0	87	42	13	9	34	1.76
36315--36804	183	2.7	182	94	1	847	34	16	14	34	1.90
38771--38813	20	2.3	18	85	14	61	20	16	11	51	1.75
38776--38822	20	2.4	19	82	10	67	19	17	10	53	1.72
38957--39003	20	2.3	20	89	10	78	17	17	10	55	1.69
38743--39216	181	2.6	181	88	2	682	26	16	13	42	1.86
39282--39724	222	2.0	222	95	0	796	39	6	6	46	1.58
41228--41340	57	2.0	57	87	0	163	38	23	26	10	1.87
41366--41728	75	4.8	74	70	16	210	40	18	26	14	1.89
41570--41728	81	2.0	81	83	0	201	39	16	28	14	1.88
41261--41754	222	2.2	214	84	5	628	40	19	26	13	1.89
41261--41818	228	2.5	214	81	7	641	40	18	26	13	1.88
41660--41907	69	3.6	69	72	15	238	41	17	27	12	1.86
41947--42121	81	2.2	81	92	5	300	47	12	25	14	1.79
42079--42154	33	2.3	33	100	0	152	55	11	27	5	1.57
41998--42204	114	1.8	114	93	4	364	49	14	23	13	1.78
42151--42418	72	3.7	72	93	1	439	44	16	22	17	1.87
42365--42595	81	2.9	81	80	3	268	48	16	20	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42586--42634	21	2.3	21	78	0	53	53	16	26	4	1.61
42389--42625	81	2.9	80	77	3	242	48	17	20	13	1.80
42631--42828	72	2.8	72	93	0	342	44	15	21	18	1.86
42126--43114	480	2.0	477	85	9	1305	45	15	22	15	1.84
42903--43255	81	4.4	80	84	3	408	43	14	26	15	1.85
43189--43315	60	2.1	60	86	2	175	47	14	22	16	1.82
43052--43477	222	1.9	221	87	0	627	46	15	23	14	1.83
43249--43924	81	8.7	79	75	11	382	46	14	23	15	1.83
43108--43386	141	2.0	141	86	1	389	45	15	23	15	1.85
43512--43644	69	1.9	69	83	6	171	46	14	21	17	1.83
43598--43717	33	3.5	33	75	12	109	44	12	29	14	1.81
43448--44560	216	4.9	227	71	16	624	45	15	23	15	1.84
43873--44294	72	5.9	71	89	3	539	45	15	22	16	1.85
44261--44352	36	2.6	37	85	8	131	45	17	26	10	1.81
44341--44449	48	2.3	48	83	3	130	44	14	22	19	1.87
44389--44603	81	2.7	81	92	1	351	44	13	25	17	1.84
44562--44676	60	1.9	60	87	3	169	46	13	19	20	1.83
44396--44822	222	1.9	219	86	4	608	45	14	22	17	1.84
44613--45450	81	10.9	79	68	16	280	46	14	22	16	1.83
44477--44740	141	1.9	141	88	1	404	46	15	21	17	1.84
44958--45079	33	3.6	33	79	10	129	45	13	28	12	1.80
44939--45610	150	4.4	152	75	11	620	44	14	25	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43584--45669	231	9.1	225	70	16	1133	45	14	23	16	1.84
45211--45351	69	2.0	69	91	0	228	44	16	24	14	1.85
45280--45472	81	2.3	81	83	2	233	46	15	23	14	1.82
45417--45522	36	3.0	36	80	8	119	43	12	30	14	1.81
45424--45534	33	3.3	33	83	3	105	46	11	29	11	1.76
45461--45541	33	2.5	33	87	0	108	50	13	25	9	1.72
45493--45678	81	2.3	81	83	5	225	45	12	25	17	1.83
45622--45727	54	2.0	54	88	0	158	45	10	25	18	1.81
49533--49648	57	2.0	57	100	0	232	27	6	43	22	1.76
57684--57732	2	24.5	2	100	0	98	51	0	0	48	1.00

Tables:   1

The End!