Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001521.1 Hibiscus syriacus cultivar Beakdansim tig00002969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57962

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2763--3208
149
3.0
148
93
2
738
26
15
21
36
1.93
3422--3482
21
2.9
21
80
4
61
49
1
18
31
1.57
3424--3489
33
2.0
33
82
5
80
50
1
16
31
1.55
5925--5957
15
2.2
15
94
0
57
9
39
6
45
1.61
6479--6635
64
2.5
64
82
6
176
33
20
17
28
1.96
7978--8429
149
3.0
149
94
0
771
27
15
21
36
1.93
8641--8701
21
2.9
21
80
4
61
49
1
18
31
1.57
8643--8708
33
2.0
33
82
5
80
50
1
16
31
1.55
11779--11829
10
5.1
10
87
0
75
21
33
25
19
1.97
11770--11829
30
2.0
30
83
0
75
21
35
25
18
1.96
11857--11925
30
2.3
30
90
2
104
30
7
24
37
1.83
12946--12998
25
2.1
25
89
0
79
28
7
16
47
1.74
13615--13886
45
6.1
45
88
2
386
41
13
19
24
1.88
15103--15175
19
3.7
19
75
10
74
46
17
15
20
1.84
15125--15196
22
3.4
22
73
11
78
40
23
16
19
1.91
15106--15215
41
2.7
41
88
4
159
43
20
15
20
1.87
15188--15260
20
3.6
20
72
3
65
42
23
16
17
1.89
15185--15281
41
2.4
41
91
0
158
39
24
15
20
1.91
15185--15298
21
5.5
21
74
3
106
37
24
14
23
1.92
15328--15380
19
2.8
19
97
0
97
33
16
28
20
1.95
21020--21072
23
2.4
22
72
22
56
50
15
0
33
1.44
22098--22129
6
5.3
6
92
0
55
34
15
0
50
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22646--22800
74
2.1
74
90
0
238
40
14
16
29
1.88
32911--33065
77
2.0
79
83
5
199
42
4
10
42
1.59
34669--34824
21
7.4
21
82
0
195
41
3
5
49
1.45
34661--34832
63
2.7
63
81
9
215
40
4
6
48
1.47
34669--34834
10
15.9
10
73
10
100
40
3
6
49
1.46
34925--34976
24
2.2
24
100
0
104
36
0
15
48
1.45
35563--35605
18
2.4
18
92
0
68
20
6
0
72
1.08
35650--35759
41
2.7
41
90
1
159
20
8
1
69
1.24
37194--37364
85
2.0
85
87
2
245
31
25
21
21
1.98
40110--40221
48
2.3
48
81
0
134
49
15
14
21
1.79
40110--40219
24
4.6
24
75
8
89
49
15
14
20
1.80
42436--42469
17
2.0
17
94
0
59
32
23
32
11
1.91
44619--44709
24
3.8
24
75
4
85
51
15
10
21
1.74
44610--44717
48
2.2
48
81
3
128
51
15
11
21
1.74
46971--47016
24
2.0
23
91
4
74
30
26
28
15
1.96
50767--50826
30
2.0
30
100
0
120
36
10
13
40
1.78

Tables:   1

The End!