genome.fa.s1522.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001522.1 Hibiscus syriacus cultivar Beakdansim tig00002981_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136892

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1699--1734	2	18.0	2	100	0	72	50	0	0	50	1.00
4380--4409	2	15.5	2	93	6	53	50	0	0	50	1.00
4383--4408	13	2.0	13	100	0	52	46	0	0	53	1.00
4381--4409	15	1.9	15	100	0	58	48	0	0	51	1.00
6080--6143	29	2.1	32	82	8	80	53	1	4	40	1.31
6482--6654	60	2.9	60	80	12	171	31	21	3	42	1.70
6805--6957	60	2.6	59	78	9	166	45	5	18	30	1.72
6810--6954	59	2.4	61	82	3	179	46	4	17	32	1.67
7556--7689	60	2.2	61	82	4	182	33	25	4	36	1.76
7822--7981	60	2.7	60	86	0	194	42	5	22	29	1.76
7877--8001	60	2.1	60	83	3	153	45	4	17	32	1.67
9332--9454	59	2.1	58	81	3	138	35	20	13	30	1.91
11434--11501	31	2.3	29	85	10	84	50	7	16	26	1.71
13531--13608	12	6.5	13	73	15	78	26	16	15	41	1.88
13531--13608	24	3.2	24	92	3	131	26	16	15	41	1.88
35544--35635	2	46.0	2	100	0	184	50	0	0	50	1.00
35733--35778	20	2.3	20	96	0	83	28	19	21	30	1.98
37180--37265	30	2.8	30	76	8	93	38	9	11	40	1.74
38525--38598	20	3.7	20	75	10	78	41	18	21	17	1.90
38542--38617	21	3.7	21	80	3	100	40	18	25	15	1.90
38525--38617	41	2.3	41	98	0	177	40	18	23	17	1.90
38544--38678	41	3.3	41	84	4	148	37	21	20	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38606--38699	20	4.7	20	80	7	91	32	25	17	24	1.96
38887--38930	22	2.0	22	95	0	79	20	45	15	18	1.85
39194--39231	20	1.9	20	88	0	58	13	15	21	50	1.78
40551--40595	18	2.5	18	77	0	54	28	46	13	11	1.77
41116--41173	14	3.9	14	79	16	71	48	25	17	8	1.75
41100--41190	32	2.8	33	93	3	157	48	23	17	10	1.79
41080--41195	19	6.6	19	68	21	74	43	23	20	12	1.85
41207--41264	14	3.9	14	79	16	71	8	17	25	48	1.75
41202--41280	32	2.4	33	95	2	142	10	18	24	46	1.80
41221--41338	20	6.4	19	77	11	95	13	20	24	41	1.88
43254--43307	24	2.2	24	90	0	81	24	16	20	38	1.92
43482--43506	12	2.1	12	100	0	50	72	0	28	0	0.86
45971--45997	14	1.9	14	100	0	54	37	25	0	37	1.57
46222--46335	20	5.7	20	84	6	122	25	16	25	32	1.96
46222--46338	61	1.9	61	87	0	171	24	16	24	34	1.95
46324--46399	21	3.7	21	80	3	100	15	25	18	40	1.90
46304--46416	41	2.8	41	90	2	147	19	22	19	38	1.93
46222--46356	61	2.2	61	82	2	164	23	18	24	33	1.97
46324--46416	20	4.6	20	77	4	87	17	23	18	40	1.90
52041--52085	19	2.4	19	100	0	90	46	0	0	53	1.00
53288--53326	21	1.9	20	89	5	60	20	2	5	71	1.17
57897--57957	10	6.0	9	77	19	50	77	3	1	18	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58240--58283	17	2.6	17	81	0	52	65	2	0	31	1.05
59477--59557	41	2.0	40	95	2	144	44	2	16	37	1.61
59952--60412	105	4.4	105	90	3	709	22	18	25	33	1.97
59952--60412	204	2.2	205	90	2	717	22	18	25	33	1.97
61153--61268	61	1.9	61	82	8	148	12	20	12	55	1.68
70611--70644	10	3.4	10	87	0	50	73	0	5	20	1.04
73456--73537	41	2.0	41	97	0	155	45	2	15	36	1.60
74949--75120	87	2.0	87	87	4	249	41	12	7	38	1.71
75341--75369	2	14.5	2	100	0	58	51	0	0	48	1.00
83415--83457	20	2.2	20	83	8	52	4	18	4	72	1.20
84969--85008	20	2.1	19	85	4	53	35	5	32	27	1.79
92377--92697	160	2.0	161	99	0	635	33	6	9	49	1.61
95530--95590	2	31.5	2	93	6	108	47	0	0	52	1.00
96476--96509	14	2.4	14	90	9	52	26	29	17	26	1.98
98142--98205	19	3.4	19	82	0	74	20	15	17	46	1.83
99668--99735	32	2.1	32	91	0	109	16	25	5	52	1.65
114074--114139	27	2.4	27	87	7	89	21	12	22	43	1.85
120760--120806	2	23.5	2	100	0	94	48	0	51	0	1.00
122590--122676	20	4.3	21	85	5	108	20	16	33	29	1.94
123271--123337	2	35.0	2	71	14	52	43	0	1	55	1.09
123260--123327	21	3.1	22	85	8	95	38	0	0	61	0.96
123339--123379	14	2.8	15	86	13	59	34	2	12	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123339--123378	15	2.8	14	85	14	55	35	2	10	52	1.48
123380--123764	37	10.4	36	84	10	397	46	3	5	44	1.44
123460--123764	73	4.2	71	84	9	368	46	4	5	43	1.45
123460--123736	110	2.5	109	88	4	391	46	4	5	42	1.47
123746--123805	2	30.0	2	100	0	120	50	0	0	50	1.00
123447--123800	110	3.2	106	79	12	337	47	3	4	44	1.41
123820--123845	9	2.9	9	100	0	52	30	0	0	69	0.89
124976--125023	12	3.8	12	79	15	53	12	4	2	81	0.93
124978--125032	18	2.9	18	76	23	51	14	3	1	80	0.94
124978--125039	21	3.1	21	84	13	78	12	6	1	79	1.00
125048--125118	3	23.3	3	83	13	92	29	2	0	67	1.05
125148--125224	32	2.3	33	86	8	104	24	9	1	64	1.30
128812--129012	99	2.0	98	87	2	287	33	15	16	33	1.91
128934--129139	84	2.5	83	89	4	299	30	20	16	32	1.95
130372--131038	85	7.8	85	88	0	872	35	20	17	26	1.95
131632--131692	2	30.5	2	89	0	95	47	0	3	49	1.18
131715--132131	36	11.7	35	84	9	415	45	4	5	44	1.48
132113--132148	2	18.0	2	100	0	72	50	0	0	50	1.00
132148--132198	4	12.0	4	76	19	50	23	3	0	72	1.01
133228--133279	24	2.2	24	82	6	61	26	19	9	44	1.81
133927--133980	22	2.5	22	93	0	90	29	24	18	27	1.98
134148--134198	20	2.6	20	93	3	86	35	13	5	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134919--134953	16	2.2	16	100	0	70	37	0	42	20	1.52
135229--135295	19	3.3	20	81	6	73	16	4	0	79	0.90
135231--135294	22	2.8	23	83	9	69	17	3	0	79	0.85
135319--135362	3	14.3	3	86	13	63	29	2	0	68	1.02

Tables:   1

The End!