Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001523.1 Hibiscus syriacus cultivar Beakdansim tig00002982_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1321709
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
File 3 of 6
Found at i:477268 original size:64 final size:63
Alignment explanation
Indices: 477171--477382 Score: 221
Period size: 64 Copynumber: 3.3 Consensus size: 63
477161 CACATTCATA
* * * *
477171 AGTGCATCGATGCATTCC-TTTCAAAGAAGAACATCGAATGCCTTTGATGCATCGATGCATAACT
1 AGTGCATCGATGCA-TCCTTTTAAAAGAA-AACATCGAATGCATTTAATGCATCGATGCATAAGT
* * * * *
477235 AATGCATCGATGCATCCTTTTAAAATAATAACATCGAATGCAATCAATGCATCGATGCATAAGG
1 AGTGCATCGATGCATCCTTTTAAAAGAA-AACATCGAATGCATTTAATGCATCGATGCATAAGT
* * * * * *
477299 AGTGCATAGATGCAT-CTCATTAATAAGGAAACATCGAATGCATTTTATGCACCGATGCACAAGT
1 AGTGCATCGATGCATCCT-TTTAA-AAGAAAACATCGAATGCATTTAATGCATCGATGCATAAGT
477363 AGTGCATCGATGCATACCTT
1 AGTGCATCGATGCAT-CCTT
477383 CATTGAAAGA
Statistics
Matches: 120, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
63 5 0.04
64 110 0.92
65 3 0.03
66 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (63 bp):
AGTGCATCGATGCATCCTTTTAAAAGAAAACATCGAATGCATTTAATGCATCGATGCATAAGT
Found at i:478083 original size:30 final size:30
Alignment explanation
Indices: 478047--478110 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
478037 AAGGAACATA
* *
478047 TGGATAGTTGCCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATAACCTC
* * *
478077 TGGATAGTTACCGGGGTTCTTTGTAACCTC
1 TGGATAGTTACCGAGGATCTTTATAACCTC
478107 TGGA
1 TGGA
478111 CAGGTCCTTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (30 bp):
TGGATAGTTACCGAGGATCTTTATAACCTC
Found at i:483979 original size:24 final size:24
Alignment explanation
Indices: 483952--484013 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
483942 CTATTCTTTC
483952 GCTTCAATTGAGCTCGAATTTCAG
1 GCTTCAATTGAGCTCGAATTTCAG
483976 GCTTCAATTGAGCTCGAATTTCAG
1 GCTTCAATTGAGCTCGAATTTCAG
*
484000 GCTTCAATCGAGCT
1 GCTTCAATTGAGCT
484014 TCTAAATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (24 bp):
GCTTCAATTGAGCTCGAATTTCAG
Found at i:484611 original size:34 final size:33
Alignment explanation
Indices: 484556--484624 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 33
484546 TTCTTTTCTC
* * *
484556 TGTTCGAAACAGTTGGCATTTTTTTCTTTTTTTT
1 TGTTCGAAACAGTTGACA-TTTTCTCTATTTTTT
*
484590 TGTTCGAAACAG-TGAATATTTTCTCTATTTTTT
1 TGTTCGAAACAGTTG-ACATTTTCTCTATTTTTT
484623 TG
1 TG
484625 ATTTTTCATG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
33 17 0.57
34 13 0.43
ACGTcount: A:0.19, C:0.12, G:0.14, T:0.55
Consensus pattern (33 bp):
TGTTCGAAACAGTTGACATTTTCTCTATTTTTT
Found at i:485859 original size:11 final size:11
Alignment explanation
Indices: 485843--485893 Score: 70
Period size: 11 Copynumber: 4.8 Consensus size: 11
485833 AAGTTTGCTA
485843 AAAATAAAATG
1 AAAATAAAATG
*
485854 AAAATAAAACG
1 AAAATAAAATG
485865 -AAATAAAATG
1 AAAATAAAATG
485875 AAAATAAAAT-
1 AAAATAAAATG
*
485885 AAAACAAAA
1 AAAATAAAA
485894 AATATAACGA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
10 17 0.47
11 19 0.53
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.14
Consensus pattern (11 bp):
AAAATAAAATG
Found at i:485862 original size:5 final size:5
Alignment explanation
Indices: 485843--485893 Score: 57
Period size: 5 Copynumber: 9.8 Consensus size: 5
485833 AAGTTTGCTA
* * *
485843 AAAAT AAAAT GAAAAT AAAAC GAAAT AAAAT GAAAAT AAAAT AAAAC AAAA
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAA
485894 AATATAACGA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
5 29 0.74
6 10 0.26
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:485870 original size:21 final size:21
Alignment explanation
Indices: 485844--485883 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
485834 AGTTTGCTAA
485844 AAATAAAATGAAAATAAAACG
1 AAATAAAATGAAAATAAAACG
485865 AAATAAAATGAAAATAAAA
1 AAATAAAATGAAAATAAAA
485884 TAAAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (21 bp):
AAATAAAATGAAAATAAAACG
Found at i:485893 original size:21 final size:21
Alignment explanation
Indices: 485843--485893 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
485833 AAGTTTGCTA
485843 AAAATAAAATGAAAATAAAAC
1 AAAATAAAATGAAAATAAAAC
* *
485864 GAAATAAAATGAAAATAAAAT
1 AAAATAAAATGAAAATAAAAC
*
485885 AAAACAAAA
1 AAAATAAAA
485894 AATATAACGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.14
Consensus pattern (21 bp):
AAAATAAAATGAAAATAAAAC
Found at i:494664 original size:44 final size:40
Alignment explanation
Indices: 494597--494712 Score: 108
Period size: 44 Copynumber: 2.8 Consensus size: 40
494587 ATGTTTGTTT
** * * *
494597 TTGG-GGATGACACTATTCATACGTGATGAATAGTTCTGG
1 TTGGAGGATGACACGGTTCCTACGTGATGAAGAGATCTGG
* *
494636 TTGTTTTGAGGGTGACACGGTTCCTACGTGATGAGGAGATCTGG
1 TTG----GAGGATGACACGGTTCCTACGTGATGAAGAGATCTGG
* *
494680 TTGGTGGATGACACGGTTCCTACGTGATAAAGA
1 TTGGAGGATGACACGGTTCCTACGTGATGAAGA
494713 CGGCTGACCA
Statistics
Matches: 61, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
39 3 0.05
40 26 0.43
43 1 0.02
44 31 0.51
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.31
Consensus pattern (40 bp):
TTGGAGGATGACACGGTTCCTACGTGATGAAGAGATCTGG
Found at i:494906 original size:134 final size:134
Alignment explanation
Indices: 494657--494940 Score: 352
Period size: 134 Copynumber: 2.1 Consensus size: 134
494647 GTGACACGGT
* * * *
494657 TCCTACGTGATGAGGAGATCTGGTTGGTGGATGACACGGTTCCTACGTGATAAAGACGGCTGACC
1 TCCTACGTGATGAGGAGATATGGTCGGTGGATGACACGGTTCATACGCGATAAAGACGGCTGACC
* * **
494722 ATCTTTAGGGATGACGATAACACAATTCCTATATAATGAGAACAGTTGGTTATCTAAGGTTAACA
66 ATCTTTAGGAATGACGATAACACAATTCCTATACAATGAGAACAACTGGTTATCTAAGGTTAACA
* *
494787 TGGC
131 CGAC
* * * * * * * *
494791 TCCTATGTGATGAGGTGGTATGGTCGGTGGATGGCATGGTTCATACGCGATTAAGATGGTTGACC
1 TCCTACGTGATGAGGAGATATGGTCGGTGGATGACACGGTTCATACGCGATAAAGACGGCTGACC
* * * * * *
494856 ATCTTTAGGAATTATGATAACACAGTTCCTATACGATGAGTACAACTGGTTATCTAAGGTTGACA
66 ATCTTTAGGAATGACGATAACACAATTCCTATACAATGAGAACAACTGGTTATCTAAGGTTAACA
494921 CGAC
131 CGAC
494925 TCCTACGTGATGAGGA
1 TCCTACGTGATGAGGA
494941 CGGTTGGCCA
Statistics
Matches: 124, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
134 124 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (134 bp):
TCCTACGTGATGAGGAGATATGGTCGGTGGATGACACGGTTCATACGCGATAAAGACGGCTGACC
ATCTTTAGGAATGACGATAACACAATTCCTATACAATGAGAACAACTGGTTATCTAAGGTTAACA
CGAC
Found at i:495014 original size:36 final size:35
Alignment explanation
Indices: 494964--495086 Score: 116
Period size: 36 Copynumber: 3.6 Consensus size: 35
494954 TTAGGGATAA
494964 TGTTTCAAGAGAAACTATCTCAGGAGAGACAAAATT
1 TGTTTCAAGAGAAACTATCTCA-GAGAGACAAAATT
* * * **
495000 TATTTCAAGGGAAACGATCTCA-A-AG--ATGA--
1 TGTTTCAAGAGAAACTATCTCAGAGAGACAAAATT
495029 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTATCTC-AGAGAGACAAAATT
*
495065 TGTTTCAAGGGAAA-TGATCTCA
1 TGTTTCAAGAGAAACT-ATCTCA
495087 AAGATGATGT
Statistics
Matches: 68, Mismatches: 11, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
29 18 0.26
30 1 0.01
31 3 0.04
32 2 0.03
33 2 0.03
34 3 0.04
35 2 0.03
36 37 0.54
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.26
Consensus pattern (35 bp):
TGTTTCAAGAGAAACTATCTCAGAGAGACAAAATT
Found at i:495035 original size:29 final size:29
Alignment explanation
Indices: 495002--495098 Score: 88
Period size: 29 Copynumber: 3.1 Consensus size: 29
494992 ACAAAATTTA
495002 TTTCAAGGGAAACGATCTCAAAGATGATG
1 TTTCAAGGGAAACGATCTCAAAGATGATG
* *
495031 TTTCAAGAGAAACTATCTCAAGAGA-GACAAAATTTG
1 TTTCAAGGGAAACGATCTCAA-AGATG-----A--TG
*
495067 TTTCAAGGGAAATGATCTCAAAGATGATG
1 TTTCAAGGGAAACGATCTCAAAGATGATG
495096 TTT
1 TTT
495099 TAAGAGAATC
Statistics
Matches: 54, Mismatches: 5, Indels: 18
0.70 0.06 0.23
Matches are distributed among these distances:
29 25 0.46
30 3 0.06
31 1 0.02
34 1 0.02
35 3 0.06
36 21 0.39
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (29 bp):
TTTCAAGGGAAACGATCTCAAAGATGATG
Found at i:495071 original size:65 final size:65
Alignment explanation
Indices: 494963--495138 Score: 280
Period size: 65 Copynumber: 2.7 Consensus size: 65
494953 TTTAGGGATA
* *
494963 ATGTTTCAAGAGAAACTATCTCAGGAGAGACAAAATTTATTTCAAGGGAAACGATCTCAAAGATG
1 ATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACGATCTCAAAGATG
*
495028 ATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGGGAAATGATCTCAAAGATG
1 ATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACGATCTCAAAGATG
* * * * *
495093 ATGTTTTAAGAGAATCTGTCTCAAGAGAGACACAACTTGTTTCAAG
1 ATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAG
495139 AGATACAATC
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 103 1.00
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.27
Consensus pattern (65 bp):
ATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACGATCTCAAAGATG
Found at i:496720 original size:13 final size:12
Alignment explanation
Indices: 496702--496763 Score: 61
Period size: 12 Copynumber: 4.7 Consensus size: 12
496692 GCTTCTTGTA
496702 TTCTTTATTTTTT
1 TTCTTT-TTTTTT
496715 TTCTTTTTTTGATT
1 TTCTTTTTTT--TT
496729 TGATCTTTTCTTTTT
1 T--TCTTTT-TTTTT
*
496744 TTCTTTGTTTTT
1 TTCTTTTTTTTT
496756 TTCTTTTT
1 TTCTTTTT
496764 CTTTGCTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
12 16 0.38
13 11 0.26
14 3 0.07
15 3 0.07
16 6 0.14
17 3 0.07
ACGTcount: A:0.05, C:0.10, G:0.05, T:0.81
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:496744 original size:20 final size:20
Alignment explanation
Indices: 496713--496763 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
496703 TCTTTATTTT
496713 TTTTCTTTTTTTGATTTGATC
1 TTTTC-TTTTTTGATTTGATC
** * *
496734 TTTTCTTTTTTTCTTTGTTT
1 TTTTCTTTTTTGATTTGATC
496754 TTTTCTTTTT
1 TTTTCTTTTT
496764 CTTTGCTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.04, C:0.10, G:0.06, T:0.80
Consensus pattern (20 bp):
TTTTCTTTTTTGATTTGATC
Found at i:521013 original size:62 final size:62
Alignment explanation
Indices: 520939--521064 Score: 243
Period size: 62 Copynumber: 2.0 Consensus size: 62
520929 CAGTCCATCC
520939 AACCAAGAAGAAATGATTTATGGATTGAGTGCAATGATCAAATATTTTCTAGGAGGCAATGA
1 AACCAAGAAGAAATGATTTATGGATTGAGTGCAATGATCAAATATTTTCTAGGAGGCAATGA
*
521001 AACCAAGAAGAAATGATTTATGGATTGAGTGCAATGATCAAATATTTTCTAGGATGCAATGA
1 AACCAAGAAGAAATGATTTATGGATTGAGTGCAATGATCAAATATTTTCTAGGAGGCAATGA
521063 AA
1 AA
521065 TACGACTATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (62 bp):
AACCAAGAAGAAATGATTTATGGATTGAGTGCAATGATCAAATATTTTCTAGGAGGCAATGA
Found at i:521819 original size:134 final size:134
Alignment explanation
Indices: 521575--522000 Score: 569
Period size: 130 Copynumber: 3.2 Consensus size: 134
521565 AGTAACTGTG
* * * *
521575 ATTTAACTTAAATAAACAACGAGGAGCTACTTCCCAGTTCA-GACTTTGAGCTAGATTTCAACTT
1 ATTTAACTTAACTCAACAATGAGGAGCTACTTCCCAGTTCATGACTTCGAGCTAGATTTCAACTT
* * * * * *
521639 CACGATGAAGAATATCATGCTCAAGTCATCCGAGATCGACTTAACTTCACGACGAATGAATCGTC
66 CACGATGAAGGATATCGTGCTCAAGTCATTCAAGATCGACTCAACTTCACGACGAATGAATCATC
*
521704 TACA
131 CACA
* * *
521708 ATTTAGCTTAACTCAACAATGAGGAGCTACTTCCCATTTCATGACTTCGAGCTAGATTTCAAGTT
1 ATTTAACTTAACTCAACAATGAGGAGCTACTTCCCAGTTCATGACTTCGAGCTAGATTTCAACTT
*
521773 CACGATGAAGGATATCGTGCTCAACTCATTCAAGATCGACTCAACTTC-CTGAC--A--AATCAT
66 CACGATGAAGGATATCGTGCTCAAGTCATTCAAGATCGACTCAACTTCAC-GACGAATGAATCAT
521833 CCACA
130 CCACA
* * * *
521838 ATTTAACTTAGCTTAACAATGAGGAGCTACTTCTCAGTCCATGACTTCGAGCTAGATTTCAACTT
1 ATTTAACTTAACTCAACAATGAGGAGCTACTTCCCAGTTCATGACTTCGAGCTAGATTTCAACTT
* ** *
521903 CACGATGAAGGATATCGTGCTCAAGTCATTCAAAATCGACTCAACTTCATAACGAATGAGTCATC
66 CACGATGAAGGATATCGTGCTCAAGTCATTCAAGATCGACTCAACTTCACGACGAATGAATCATC
521968 CACA
131 CACA
*
521972 ATTTAGA-TTAACTCAACAATGAAGAGCTA
1 ATTTA-ACTTAACTCAACAATGAGGAGCTA
522001 TTTTTCAACC
Statistics
Matches: 255, Mismatches: 30, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
130 115 0.45
132 2 0.01
133 37 0.15
134 100 0.39
135 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (134 bp):
ATTTAACTTAACTCAACAATGAGGAGCTACTTCCCAGTTCATGACTTCGAGCTAGATTTCAACTT
CACGATGAAGGATATCGTGCTCAAGTCATTCAAGATCGACTCAACTTCACGACGAATGAATCATC
CACA
Found at i:527154 original size:16 final size:16
Alignment explanation
Indices: 527117--527192 Score: 57
Period size: 16 Copynumber: 4.8 Consensus size: 16
527107 GAGTATGTTC
*
527117 ATAAACGAATAAAGT-
1 ATAAACTAATAAAGTA
*
527132 GTAAACTAATAAAGTA
1 ATAAACTAATAAAGTA
* * *
527148 ATAAACTACTAAATTG
1 ATAAACTAATAAAGTA
* *
527164 GTAAACTACT-AAGTTA
1 ATAAACTAATAAAG-TA
*
527180 ATGAACTAATAAA
1 ATAAACTAATAAA
527193 TCAATGAACA
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
15 15 0.33
16 29 0.63
17 2 0.04
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.26
Consensus pattern (16 bp):
ATAAACTAATAAAGTA
Found at i:527169 original size:32 final size:32
Alignment explanation
Indices: 527117--527193 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
527107 GAGTATGTTC
* *
527117 ATAAACGAATAAAGT-GTAAACTAATAAAG-TA
1 ATAAACTAATAAATTGGTAAACTAAT-AAGTTA
* *
527148 ATAAACTACTAAATTGGTAAACTACTAAGTTA
1 ATAAACTAATAAATTGGTAAACTAATAAGTTA
*
527180 ATGAACTAATAAAT
1 ATAAACTAATAAAT
527194 CAATGAACAG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
31 15 0.39
32 23 0.61
ACGTcount: A:0.53, C:0.09, G:0.10, T:0.27
Consensus pattern (32 bp):
ATAAACTAATAAATTGGTAAACTAATAAGTTA
Found at i:527590 original size:30 final size:31
Alignment explanation
Indices: 527556--527616 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
527546 ATACAGTTTA
* * *
527556 AACTAATAAAA-TAATGAATATTTTAACTTT
1 AACTAAAAAAAGTAATGAACAATTTAACTTT
527586 AACTAAAAAAAGTAATGAACAATTTAACTTT
1 AACTAAAAAAAGTAATGAACAATTTAACTTT
527617 GTTTCATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.34
Consensus pattern (31 bp):
AACTAAAAAAAGTAATGAACAATTTAACTTT
Found at i:527775 original size:11 final size:11
Alignment explanation
Indices: 527737--527777 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
527727 CTTTATGTTC
*
527737 ATAAAATATTA
1 ATAATATATTA
*
527748 ATAACATATTA
1 ATAATATATTA
*
527759 ACAATATATTA
1 ATAATATATTA
527770 ATAATATA
1 ATAATATA
527778 CAATAAACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAATATATTA
Found at i:527923 original size:18 final size:18
Alignment explanation
Indices: 527884--527925 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
527874 CAAATACTGG
*
527884 TAGTGGGCCTAATGCTTG
1 TAGTGGGCCTAATGCTTC
*
527902 TAGTGGTCCTAATG-TTAC
1 TAGTGGGCCTAATGCTT-C
527920 TAGTGG
1 TAGTGG
527926 ACTTAATCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.19, C:0.14, G:0.31, T:0.36
Consensus pattern (18 bp):
TAGTGGGCCTAATGCTTC
Found at i:527924 original size:36 final size:36
Alignment explanation
Indices: 527884--527964 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 36
527874 CAAATACTGG
* * * * *
527884 TAGTGGGCCTAATGCTTGTAGTGGTCCTAATGTTAC
1 TAGTGGACCTAATCCTGGCAGTGATCCTAATGTTAC
* *
527920 TAGTGGACTTAATCCTGGCAGTGATCCTAATGTTGC
1 TAGTGGACCTAATCCTGGCAGTGATCCTAATGTTAC
527956 TAGT-GACCT
1 TAGTGGACCT
527965 TAATGAAGTA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
35 4 0.11
36 33 0.89
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (36 bp):
TAGTGGACCTAATCCTGGCAGTGATCCTAATGTTAC
Found at i:530684 original size:21 final size:21
Alignment explanation
Indices: 530619--530693 Score: 78
Period size: 21 Copynumber: 3.6 Consensus size: 21
530609 CCTATGCTAT
* *
530619 AACAACTTCTCACCATGTTGC
1 AACATCTTCTCACCATGCTGC
* * * *
530640 AACTTCTTCTAACCCTGCTAC
1 AACATCTTCTCACCATGCTGC
* *
530661 AACATCTTCTCACCTTACTGC
1 AACATCTTCTCACCATGCTGC
530682 AACATCTTCTCA
1 AACATCTTCTCA
530694 ACAGACCACT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.27, C:0.36, G:0.05, T:0.32
Consensus pattern (21 bp):
AACATCTTCTCACCATGCTGC
Found at i:531111 original size:22 final size:22
Alignment explanation
Indices: 531044--531112 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 22
531034 GTTGTATTTT
* *
531044 GTTATATTTTTTGTAGGCAATA
1 GTTATATTTTGTGTATGCAATA
* * **
531066 GTTATATCTTGTTATATG-TTTA
1 GTTATATTTTG-TGTATGCAATA
*
531088 GTTATATTTTGTGTATGCAGTA
1 GTTATATTTTGTGTATGCAATA
531110 GTT
1 GTT
531113 GTGTTGACTT
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
21 5 0.14
22 26 0.74
23 4 0.11
ACGTcount: A:0.23, C:0.04, G:0.19, T:0.54
Consensus pattern (22 bp):
GTTATATTTTGTGTATGCAATA
Found at i:533044 original size:15 final size:16
Alignment explanation
Indices: 533015--533044 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
533005 CGGTTGATTT
533015 TCATATCGAGCCAATA
1 TCATATCGAGCCAATA
533031 TCATATCG-GCCAAT
1 TCATATCGAGCCAAT
533045 TTTTGATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (16 bp):
TCATATCGAGCCAATA
Found at i:534588 original size:14 final size:14
Alignment explanation
Indices: 534551--534601 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
534541 TGACACAACT
*
534551 GAGTCAACTCGAATC
1 GAGTCAACTCG-ACC
*
534566 GAGTTAACTCGACC
1 GAGTCAACTCGACC
534580 GAGTCAACTC-ATCC
1 GAGTCAACTCGA-CC
534594 GAGTCAAC
1 GAGTCAAC
534602 CCGTTCACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 1 0.03
14 21 0.66
15 10 0.31
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (14 bp):
GAGTCAACTCGACC
Found at i:535052 original size:95 final size:96
Alignment explanation
Indices: 534888--535074 Score: 270
Period size: 95 Copynumber: 2.0 Consensus size: 96
534878 AATGTTAATA
* * * *
534888 AACTATGGATACATGATATGTGTTCTCTGATTTCCTATTTTCACTGGAAAATATAATCGTTCTCG
1 AACTATGGATACATGAAATGTGTTATATGATTTCCTATTTTCACTGAAAAATATAATCGTTCTCG
534953 ATTTATGGATCATGGAATCTACTGGTTTATG
66 ATTTATGGATCATGGAATCTACTGGTTTATG
* * *
534984 AACTATGGTTACCTGAAATGTGTTATATGGTTTCCTA-TTTCACTGAAAAATATAATCGTTC-CT
1 AACTATGGATACATGAAATGTGTTATATGATTTCCTATTTTCACTGAAAAATATAATCGTTCTC-
* *
535047 GATTTATGGATCATGGTATCTATTGGTT
65 GATTTATGGATCATGGAATCTACTGGTT
535075 ACTACTTGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
94 1 0.01
95 49 0.60
96 31 0.38
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (96 bp):
AACTATGGATACATGAAATGTGTTATATGATTTCCTATTTTCACTGAAAAATATAATCGTTCTCG
ATTTATGGATCATGGAATCTACTGGTTTATG
Found at i:536100 original size:18 final size:18
Alignment explanation
Indices: 536077--536112 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
536067 TATATATATG
536077 AATGGTTTTCTGGAACTT
1 AATGGTTTTCTGGAACTT
536095 AATGGTTTTCTGGAACTT
1 AATGGTTTTCTGGAACTT
536113 GTATGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (18 bp):
AATGGTTTTCTGGAACTT
Found at i:536293 original size:16 final size:16
Alignment explanation
Indices: 536272--536305 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
536262 TAAATTAGAG
536272 TAGAATATCTTTTATA
1 TAGAATATCTTTTATA
*
536288 TAGAATTTCTTTTATA
1 TAGAATATCTTTTATA
536304 TA
1 TA
536306 TTTATACGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (16 bp):
TAGAATATCTTTTATA
Found at i:536860 original size:32 final size:32
Alignment explanation
Indices: 536824--536915 Score: 116
Period size: 32 Copynumber: 2.8 Consensus size: 32
536814 CGGTTTGTGA
536824 TGCTTTCAATTCGGGTTATTGTT-AGA-TTGAAT
1 TGCTTTCAATTCGGGTTATT-TTCA-ATTTGAAT
* *
536856 TGCTTTCAGTTCGGGTTATTTTCAATTTGGAT
1 TGCTTTCAATTCGGGTTATTTTCAATTTGAAT
*
536888 TGCTTTCAATTTGGGTTAATTTTCAATT
1 TGCTTTCAATTCGGGTT-ATTTTCAATT
536916 CAAGTTAACT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
31 3 0.06
32 40 0.75
33 10 0.19
ACGTcount: A:0.20, C:0.11, G:0.20, T:0.50
Consensus pattern (32 bp):
TGCTTTCAATTCGGGTTATTTTCAATTTGAAT
Found at i:536913 original size:17 final size:16
Alignment explanation
Indices: 536868--536915 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
536858 CTTTCAGTTC
536868 GGGTTATTTTCAATTT
1 GGGTTATTTTCAATTT
* **
536884 GGATTGCTTTCAATTT
1 GGGTTATTTTCAATTT
536900 GGGTTAATTTTCAATT
1 GGGTT-ATTTTCAATT
536916 CAAGTTAACT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.21, C:0.08, G:0.19, T:0.52
Consensus pattern (16 bp):
GGGTTATTTTCAATTT
Found at i:537427 original size:16 final size:16
Alignment explanation
Indices: 537406--537479 Score: 53
Period size: 16 Copynumber: 4.5 Consensus size: 16
537396 ACAATAATAA
537406 TAAT-AATATATATTTT
1 TAATAAATA-ATATTTT
537422 TAATAAATAATATTATT
1 TAATAAATAATATT-TT
** * *
537439 TATTATATTTGATATTTA
1 TA--ATAAATAATATTTT
537457 TAATAAATAAT-TTTT
1 TAATAAATAATATTTT
*
537472 TAAAAAAT
1 TAATAAAT
537480 TATCAATCAA
Statistics
Matches: 45, Mismatches: 9, Indels: 9
0.71 0.14 0.14
Matches are distributed among these distances:
15 10 0.22
16 15 0.33
17 8 0.18
18 3 0.07
19 9 0.20
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (16 bp):
TAATAAATAATATTTT
Found at i:537427 original size:19 final size:19
Alignment explanation
Indices: 537403--537439 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
537393 ACAACAATAA
537403 TAAT-AATAATATATATTTT
1 TAATAAATAATAT-TATTTT
537422 TAATAAATAATATTATTT
1 TAATAAATAATATTATTT
537440 ATTATATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATAAATAATATTATTTT
Found at i:537432 original size:23 final size:22
Alignment explanation
Indices: 537400--537442 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
537390 ACAACAACAA
537400 TAATAATAATAATATATATTTT
1 TAATAATAATAATATATATTTT
* *
537422 TAATAAATAATATTATTTATT
1 TAAT-AATAATAATATATATT
537443 ATATTTGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TAATAATAATAATATATATTTT
Found at i:537872 original size:3 final size:3
Alignment explanation
Indices: 537864--537893 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
537854 AGCCATGGTT
537864 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
537894 AAGAGTACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:539135 original size:51 final size:51
Alignment explanation
Indices: 539080--539194 Score: 130
Period size: 51 Copynumber: 2.3 Consensus size: 51
539070 GCAATCTATT
* *
539080 CATTTTAGTCCCT-TTTAATTT-TTGATTTAGCTACTATTA-TTTTAATTT-TTG
1 CATTTTAGTCACTATTT-ATTTCTT-ATTTAACTACTA--ACTTTTAATTTCTTG
* *
539131 CATTTTGGTCACTATTTATTTCTTATTTAACTACTAACTTTTATTTTCTTG
1 CATTTTAGTCACTATTTATTTCTTATTTAACTACTAACTTTTAATTTCTTG
539182 CATTTTAGTCACT
1 CATTTTAGTCACT
539195 GTTATTTTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
49 1 0.02
50 8 0.15
51 41 0.75
52 5 0.09
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.57
Consensus pattern (51 bp):
CATTTTAGTCACTATTTATTTCTTATTTAACTACTAACTTTTAATTTCTTG
Found at i:541709 original size:20 final size:20
Alignment explanation
Indices: 541671--541709 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
541661 CTCCCATTTT
**
541671 TGCATCTTTGCATTTGTATG
1 TGCATCTTTGCATGAGTATG
541691 TGCATCTTTGCATGAGTAT
1 TGCATCTTTGCATGAGTAT
541710 ATATGCATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.21, T:0.46
Consensus pattern (20 bp):
TGCATCTTTGCATGAGTATG
Found at i:543062 original size:24 final size:24
Alignment explanation
Indices: 543042--543098 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
543032 AAGAAAACAT
*
543042 ATAGCAAAA-AAAAACATAAAAAAG
1 ATAG-AAAATAAAAAAATAAAAAAG
543066 ATAGAAAATAAAAAAATAAAAAAG
1 ATAGAAAATAAAAAAATAAAAAAG
*
543090 A-AAAAAATA
1 ATAGAAAATA
543099 GAGAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 11 0.37
24 19 0.63
ACGTcount: A:0.79, C:0.04, G:0.07, T:0.11
Consensus pattern (24 bp):
ATAGAAAATAAAAAAATAAAAAAG
Found at i:543094 original size:30 final size:31
Alignment explanation
Indices: 543059--543192 Score: 94
Period size: 31 Copynumber: 4.2 Consensus size: 31
543049 AAAAAAACAT
*
543059 AAAAAAGATAGA-AAATAAAA-AAATAAAAAAG
1 AAAAAA-ATAGAGAAA-AAAAGAAAGAAAAAAG
543090 AAAAAAATAGAGAAAAAAAGAAAGAAAAAAG
1 AAAAAAATAGAGAAAAAAAGAAAGAAAAAAG
* * * * * * * *
543121 AAAGAAAGAAACAAATAGAGAAA-AATAGAG
1 AAAAAAATAGAGAAAAAAAGAAAGAAAAAAG
* *
543151 AAAAAAAGAGAGAAATGAAAAGAAAAAAAAGAAG
1 AAAAAAATAGAGAAA--AAAAGAAAGAAAA-AAG
543185 AAAGAAAA
1 AAA-AAAA
543193 CCAATCAAAT
Statistics
Matches: 80, Mismatches: 16, Indels: 10
0.75 0.15 0.09
Matches are distributed among these distances:
30 26 0.32
31 36 0.45
32 6 0.08
33 3 0.04
34 5 0.06
35 4 0.05
ACGTcount: A:0.78, C:0.01, G:0.16, T:0.05
Consensus pattern (31 bp):
AAAAAAATAGAGAAAAAAAGAAAGAAAAAAG
Found at i:543096 original size:10 final size:10
Alignment explanation
Indices: 543047--543180 Score: 76
Period size: 10 Copynumber: 12.8 Consensus size: 10
543037 AACATATAGC
*
543047 AAAAAAAAAC
1 AAAAAAAAAG
543057 ATAAAAAAGATAG
1 A-AAAAAA-A-AG
543070 AAAATAAAAA-
1 AAAA-AAAAAG
*
543080 AATAAAAAAG
1 AAAAAAAAAG
*
543090 AAAAAAATAG
1 AAAAAAAAAG
*
543100 AGAAAAAAAG
1 AAAAAAAAAG
543110 AAAGAAAAAAG
1 AAA-AAAAAAG
*
543121 --AAAGAAAG
1 AAAAAAAAAG
*
543129 AAACAAATAGAG
1 AAA-AAA-AAAG
* *
543141 AAAAATAGAG
1 AAAAAAAAAG
543151 AAAAAAAGAGAG
1 AAAAAAA-A-AG
**
543163 AAATGAAAAG
1 AAAAAAAAAG
543173 AAAAAAAA
1 AAAAAAAA
543181 GAAGAAAGAA
Statistics
Matches: 95, Mismatches: 17, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
8 6 0.06
9 6 0.06
10 41 0.43
11 19 0.20
12 18 0.19
13 5 0.05
ACGTcount: A:0.78, C:0.01, G:0.14, T:0.06
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:543103 original size:12 final size:12
Alignment explanation
Indices: 543088--543165 Score: 70
Period size: 12 Copynumber: 6.4 Consensus size: 12
543078 AAAATAAAAA
543088 AGAAAAAAATAG
1 AGAAAAAAATAG
* *
543100 AGAAAAAAAGAA
1 AGAAAAAAATAG
*
543112 AGAAAAAAGAAAG
1 AGAAAAAA-ATAG
*
543125 AAAGAAACAAATAG
1 --AGAAAAAAATAG
543139 AG--AAAAATAG
1 AGAAAAAAATAG
*
543149 AGAAAAAAAGAG
1 AGAAAAAAATAG
543161 AGAAA
1 AGAAA
543166 TGAAAAGAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
10 9 0.17
12 32 0.60
13 2 0.04
14 3 0.06
15 7 0.13
ACGTcount: A:0.76, C:0.01, G:0.19, T:0.04
Consensus pattern (12 bp):
AGAAAAAAATAG
Found at i:543118 original size:39 final size:36
Alignment explanation
Indices: 543075--543157 Score: 103
Period size: 39 Copynumber: 2.2 Consensus size: 36
543065 GATAGAAAAT
543075 AAAAAAATAAAAAAGAAAAAAATAGAGAAAAAAAGAAAG
1 AAAAAAA-AAAAAAGAAAAAAATAGAGAAAAAAAG--AG
* * *
543114 AAAAAAGAAAGAAAGAAACAAATAGAGAAAAATAGAG
1 AAAAAA-AAAAAAAGAAAAAAATAGAGAAAAAAAGAG
543151 AAAAAAA
1 AAAAAAA
543158 GAGAGAAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
36 1 0.03
37 8 0.20
39 30 0.75
40 1 0.03
ACGTcount: A:0.80, C:0.01, G:0.14, T:0.05
Consensus pattern (36 bp):
AAAAAAAAAAAAAGAAAAAAATAGAGAAAAAAAGAG
Found at i:543171 original size:26 final size:22
Alignment explanation
Indices: 543084--543192 Score: 76
Period size: 20 Copynumber: 5.2 Consensus size: 22
543074 TAAAAAAATA
543084 AAAAAGAAAAAAATAG-AG-AA-
1 AAAAAGAAAAAAA-AGAAGAAAG
*
543104 AAAAAGAAAGAAAA-AAGAAAG
1 AAAAAGAAAAAAAAGAAGAAAG
*
543125 --AAAGAAACAAATAG-AG-AA-
1 AAAAAGAAA-AAAAAGAAGAAAG
*
543143 AAATAGAGAAAAAAAGAGAGAAATG
1 AAAAAGA-AAAAAAAGA-AGAAA-G
543168 -AAAAGAAAAAAAAGAAGAAAG
1 AAAAAGAAAAAAAAGAAGAAAG
543189 AAAA
1 AAAA
543193 CCAATCAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 26
0.68 0.06 0.26
Matches are distributed among these distances:
19 12 0.17
20 28 0.41
21 3 0.04
22 10 0.14
23 11 0.16
24 5 0.07
ACGTcount: A:0.77, C:0.01, G:0.18, T:0.04
Consensus pattern (22 bp):
AAAAAGAAAAAAAAGAAGAAAG
Found at i:543187 original size:12 final size:12
Alignment explanation
Indices: 543059--543192 Score: 56
Period size: 12 Copynumber: 11.4 Consensus size: 12
543049 AAAAAAACAT
543059 AAAAAAGATAGAA
1 AAAAAAGA-AGAA
*
543072 AATAAAA-AA-AT
1 AA-AAAAGAAGAA
543083 AAAAAAGAA-AA
1 AAAAAAGAAGAA
*
543094 AAATAGAGAA-AA
1 AAA-AAAGAAGAA
543106 AAAGAAAGAA-AA
1 AAA-AAAGAAGAA
*
543118 AAGAAAGAAAGAA
1 AAAAAAG-AAGAA
*
543131 ACAAATAG-AG-A
1 A-AAAAAGAAGAA
*
543142 AAAATAG-AG-A
1 AAAAAAGAAGAA
543152 AAAAAAG-AGAGA
1 AAAAAAGAAGA-A
**
543164 AATGAA-AAGAA
1 AAAAAAGAAGAA
543175 AAAAAAGAAGAA
1 AAAAAAGAAGAA
543187 AGAAAA
1 A-AAAA
543193 CCAATCAAAT
Statistics
Matches: 97, Mismatches: 13, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
10 21 0.22
11 20 0.21
12 38 0.39
13 10 0.10
14 8 0.08
ACGTcount: A:0.78, C:0.01, G:0.16, T:0.05
Consensus pattern (12 bp):
AAAAAAGAAGAA
Found at i:558509 original size:131 final size:131
Alignment explanation
Indices: 558266--558681 Score: 618
Period size: 131 Copynumber: 3.2 Consensus size: 131
558256 GGAGTTATCA
* * * * * *
558266 GCATGACATGTCATTTATTATCAATTGGAAATAATTAGATATTATCGTTTTCTCTTGAATCAACA
1 GCATGAGAGGTCATTTATTCTCTATTGGAAATAATTAGATATTATCGTTTTCTCTCGAATCAATA
* ** *
558331 TTGATTTTTAAGACGGAATAGTGATATCTTTTCATTTC-AGTTGGAGTAATAAATGATTGCTTTA
66 TTGAATTTTAAGACAAAATAGTGATATCTCTTCATTTCGA-TTGGAGTAATAAATGATTGCTTTA
558395 AG
130 AG
* *
558397 ACATGAGAGGTCATTTATTCTCTATTGGAAATAATTAGATATTATCGTTTTCTCTCAAATCAATA
1 GCATGAGAGGTCATTTATTCTCTATTGGAAATAATTAGATATTATCGTTTTCTCTCGAATCAATA
*
558462 TTGAATTTTAAGACAAAATAGTGATATCTCTTCATTTCGATTAGAGTAATAAATGATTGCTTTAA
66 TTGAATTTTAAGACAAAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAA
558527 G
131 G
* * * *
558528 GTATGAGAGGTCGTTTATTCTCGATTGGAAATAATTAGATATTATTGTTTTCTCTCGAATCAATA
1 GCATGAGAGGTCATTTATTCTCTATTGGAAATAATTAGATATTATCGTTTTCTCTCGAATCAATA
* * * *
558593 CTGAATTTTAAGACAAAATAATGATATTTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAA
66 TTGAATTTTAAGACAAAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAA
558658 G
131 G
*
558659 GCATGAGAGGTCGTTTATTCTCT
1 GCATGAGAGGTCATTTATTCTCT
558682 CTTAAAATCC
Statistics
Matches: 258, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 257 1.00
132 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.40
Consensus pattern (131 bp):
GCATGAGAGGTCATTTATTCTCTATTGGAAATAATTAGATATTATCGTTTTCTCTCGAATCAATA
TTGAATTTTAAGACAAAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAA
G
Found at i:561145 original size:15 final size:15
Alignment explanation
Indices: 561121--561158 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
561111 AATTATCTCA
*
561121 CTTGATATTGTTTCC
1 CTTGAAATTGTTTCC
*
561136 CTTGAAATTGTTTCT
1 CTTGAAATTGTTTCC
561151 CTTGAAAT
1 CTTGAAAT
561159 ACTAGTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (15 bp):
CTTGAAATTGTTTCC
Found at i:561239 original size:54 final size:55
Alignment explanation
Indices: 561141--561244 Score: 147
Period size: 55 Copynumber: 1.9 Consensus size: 55
561131 TTTCCCTTGA
* * * * *
561141 AATTGTTTCTCTTGAAATACTAGTTTGTCTCCCTTGAGACAGTTTCCCTTTAAAC
1 AATTATTTCTCTTAAAACACCAGTTTGTCCCCCTTGAGACAGTTTCCCTTTAAAC
*
561196 AATTATTTCTCTTAAAACACCAGTTTG-CCCCCTTGAGATAGTTTCCCTT
1 AATTATTTCTCTTAAAACACCAGTTTGTCCCCCTTGAGACAGTTTCCCTT
561245 GAGATAGTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
54 20 0.47
55 23 0.53
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (55 bp):
AATTATTTCTCTTAAAACACCAGTTTGTCCCCCTTGAGACAGTTTCCCTTTAAAC
Found at i:561245 original size:15 final size:15
Alignment explanation
Indices: 561225--561276 Score: 77
Period size: 15 Copynumber: 3.5 Consensus size: 15
561215 CCAGTTTGCC
561225 CCCTTGAGATAGTTT
1 CCCTTGAGATAGTTT
561240 CCCTTGAGATAGTTT
1 CCCTTGAGATAGTTT
* *
561255 CCCCTGAGATTGTTT
1 CCCTTGAGATAGTTT
*
561270 CTCTTGA
1 CCCTTGA
561277 AACACCAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.40
Consensus pattern (15 bp):
CCCTTGAGATAGTTT
Found at i:562546 original size:14 final size:14
Alignment explanation
Indices: 562526--562555 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
562516 GGGGGAGAAA
562526 AAAAAAAGATGAGAG
1 AAAAAAAG-TGAGAG
562541 AAAAAAAGTGAGAG
1 AAAAAAAGTGAGAG
562555 A
1 A
562556 GCCGCATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.07
Consensus pattern (14 bp):
AAAAAAAGTGAGAG
Found at i:563082 original size:20 final size:20
Alignment explanation
Indices: 563049--563088 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
563039 TAATTTCCAA
* *
563049 ATTTTCTTTTTTAATTTTTT
1 ATTTTATTTCTTAATTTTTT
563069 ATTTTATTTCTTAATTTTTT
1 ATTTTATTTCTTAATTTTTT
563089 GGTTGCTGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (20 bp):
ATTTTATTTCTTAATTTTTT
Found at i:564711 original size:14 final size:15
Alignment explanation
Indices: 564677--564716 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
564667 AATGTCTAAC
564677 TCCTTCTTCTTCTTA
1 TCCTTCTTCTTCTTA
*
564692 TCCTTCTT-TTGTTA
1 TCCTTCTTCTTCTTA
*
564706 TTCTTCTTCTT
1 TCCTTCTTCTT
564717 TATTTTGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.05, C:0.28, G:0.03, T:0.65
Consensus pattern (15 bp):
TCCTTCTTCTTCTTA
Found at i:570523 original size:14 final size:14
Alignment explanation
Indices: 570493--570521 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
570483 ATGACACCTC
570493 TTGCATACGTACAT
1 TTGCATACGTACAT
570507 TTGCATA-GTACAT
1 TTGCATACGTACAT
570520 TT
1 TT
570522 TGAATTCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (14 bp):
TTGCATACGTACAT
Found at i:582173 original size:238 final size:235
Alignment explanation
Indices: 581725--582571 Score: 1076
Period size: 238 Copynumber: 3.6 Consensus size: 235
581715 CATAAATGAG
* * *
581725 AAAGCAATTTCCAAAGTTTCCCATTTAATCTTTTCTGAAAATGATATTTTTGAAAAGTAAGAAAA
1 AAAGTAATTTTCAAAGTTTCCCATTTAATCTTTTCTGAAAATGA-AATTTTGAAAAGTAAGAAAA
* * * *
581790 TGATTTACAAAGTTTC--A--TACTAAGTTCTTCGGGCCATCACTAAGTCTTTCGAGCATGATGA
65 AGATTTACAAAGTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTT-GAGCATGATGA
* * * * *
581851 TTAAATCCTTCGGATCATTTGTAAGTCTTTCGAGGAAGATGATAAGTCCTTCGGGCCATTCGTAA
129 TTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCATTCGGGCCATCCGTAA
* * * *
581916 GACCTTTGAGTATGATGTTTTCACATGAATTTGAAAAATGGG
194 GACCTTTGGGTAGGATGTTTTCACATAAATTTGAAAAATGGA
* * * * * *
581958 AAAGTGATTTTCAAAGTTTGCCTTTTAATATTTTTCTGAAAATGAAATTTTCATATAGTAAGAAA
1 AAAGTAATTTTCAAAGTTTCCCATTTAAT-CTTTTCTGAAAATGAAATTTTGA-AAAGTAAGAAA
* * * * *
582023 AAGATTTACAAAGTTTCTTACCTAGTAAGTCGTTCGGGCTATTAGTAAGTCTTTCGAGCATGAGG
64 AAGATTTACAAAGTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTT-GAGCATGATG
* *
582088 ATTAAATCCTTAGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCATTCGGGCTATCCGTA
128 ATTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCATTCGGGCCATCCGTA
582153 AGACCTTTGGGTAGGATGTTTTCACATAAATTTGAAAAATGGA
193 AGACCTTTGGGTAGGATGTTTTCACATAAATTTGAAAAATGGA
* *
582196 AAAGTAATTTTCAAAATTTCCCATTTAATCTTTTCTGAAAATGAAATTTTTTAAAAGTAAGAAAA
1 AAAGTAATTTTCAAAGTTTCCCATTTAATCTTTTCTGAAAATGAAA-TTTTGAAAAGTAAGAAAA
* * *
582261 TGATTTCCAAAGTTTATTACTTAGTAAGTCCTTCGGGCCATCAGT-A-------AGCATGATGAT
65 AGATTTACAAAGTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTGAGCATGATGAT
* * * *
582318 TAAATCCTT-TGGTCATCTGTAAGTCTTTCGAGTAAGATAATAAGTCATTCGGGCCATCAGTAAG
130 TAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCATTCGGGCCATCCGTAAG
*
582382 ACCTTCGGGTAGGATGTTTTCACATAAATTTGAAAAATGGA
195 ACCTTTGGGTAGGATGTTTTCACATAAATTTGAAAAATGGA
* * * *
582423 AAAATAATTTTCAAA-TTTACCAATTTAATCTTTTCTAAAAATGAAAAAATTTGAAAAGTAA-AA
1 AAAGTAATTTTCAAAGTTT-CCCATTTAATCTTTTCTGAAAATG--AAATTTTGAAAAGTAAGAA
* * * *
582486 AAACGATTTCCAAAGTTTCTTACTTAGTAAGACCTTCGGGTCAACAGTAAGTCTTTGAGCATGAT
63 AAA-GATTTACAAAGTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTGAGCATGAT
582551 GATTAAATCCTTCGGGTCATC
127 GATTAAATCCTTCGGGTCATC
582572 ATAAGACCTT
Statistics
Matches: 534, Mismatches: 60, Indels: 36
0.85 0.10 0.06
Matches are distributed among these distances:
226 3 0.01
227 130 0.24
228 70 0.13
229 4 0.01
233 30 0.06
234 40 0.07
236 22 0.04
237 72 0.13
238 163 0.31
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (235 bp):
AAAGTAATTTTCAAAGTTTCCCATTTAATCTTTTCTGAAAATGAAATTTTGAAAAGTAAGAAAAA
GATTTACAAAGTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTGAGCATGATGATT
AAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCATTCGGGCCATCCGTAAGA
CCTTTGGGTAGGATGTTTTCACATAAATTTGAAAAATGGA
Found at i:583077 original size:44 final size:45
Alignment explanation
Indices: 582969--583420 Score: 168
Period size: 44 Copynumber: 10.2 Consensus size: 45
582959 CGGAGTAGAT
* * * *
582969 CTTTTAGTGTTGTTCTACTTTACTTTCTCGTGAAGAAAAGTCAAC
1 CTTTTAGTGATGTTATTCTTTACTTTCTCGTGAAGAAAACTCAAC
* * * * * * *
583014 CTTTTACTGGTGTTGTTCTTGACTTCCTCGTGGAGAGAACT-AAC
1 CTTTTAGTGATGTTATTCTTTACTTTCTCGTGAAGAAAACTCAAC
* **** *
583058 CTTTTAGTGATGTTATTCTTTACTTTCTCGTGAATAGGTGTCAAT
1 CTTTTAGTGATGTTATTCTTTACTTTCTCGTGAAGAAAACTCAAC
* * ** ** * *
583103 CTTTTAGTGTTGTCT-TCCTCGACTTTCTCGTGAAGAGGAGTCAAT
1 CTTTTAGTGATGT-TATTCTTTACTTTCTCGTGAAGAAAACTCAAC
* * * * * * * *
583148 C-TTTAGTG-TCGTCATTCTTGACTTTTTTGTGGAGAGAAGTCAAA
1 CTTTTAGTGAT-GTTATTCTTTACTTTCTCGTGAAGAAAACTCAAC
* * ** * * *
583192 CTTTTAGTGATGTTATTCTTAACTTTCTCATGAAGAGGAGTAAAT
1 CTTTTAGTGATGTTATTCTTTACTTTCTCGTGAAGAAAACTCAAC
* * * * * ** * *
583237 C-TTTACT-ATTTTCATTCTTGACTTTTTTGTGAAGACGAGTCAAT
1 CTTTTAGTGATGTT-ATTCTTTACTTTCTCGTGAAGAAAACTCAAC
* * * * *
583281 C-TTTAGTGATGTCATTCTTGACTTTCTCCTGAAGATAAGTCAAC
1 CTTTTAGTGATGTTATTCTTTACTTTCTCGTGAAGAAAACTCAAC
* * * * * ** * *
583325 CTTTTAGTG-TGGTCATTCTTGAATTTCTCCTAAAGAGGAGTCAAT
1 CTTTTAGTGAT-GTTATTCTTTACTTTCTCGTGAAGAAAACTCAAC
* * * * * * *
583370 C-TTTAGTGTTGTCATT-TTTACTTTTTTGTGAAGAGAAGTCAAT
1 CTTTTAGTGATGTTATTCTTTACTTTCTCGTGAAGAAAACTCAAC
583413 CTTTTAGT
1 CTTTTAGT
583421 ATTATCAACT
Statistics
Matches: 323, Mismatches: 72, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
43 26 0.08
44 149 0.46
45 146 0.45
46 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.43
Consensus pattern (45 bp):
CTTTTAGTGATGTTATTCTTTACTTTCTCGTGAAGAAAACTCAAC
Found at i:583153 original size:89 final size:90
Alignment explanation
Indices: 582914--583650 Score: 476
Period size: 89 Copynumber: 8.3 Consensus size: 90
582904 ATATTGTTAA
* * * ** *
582914 AGGAGTCAATCTTTTAGTGTTATCTTCATTTACTTTCTCACGAAGCGGAGT-AGATCTTTTAGTG
1 AGGAGTCAATCTTTTAGTGTTGTCTTCCTTGACTTTCTCGTGAAGAGGAGTCA-ATCTTTTAGTG
* * * *
582978 TTGTTCTACTTTACTTTCTCGTGAAG
65 ATGTTATTCTTGACTTTCTCGTGAAG
** * * * * * * * * *
583004 AAAAGTCAACCTTTTACTGGTGT-TGTTCTTGACTTCCTCGTGGAGAGAACT-AACCTTTTAGTG
1 AGGAGTCAATCTTTTAGTGTTGTCT-TCCTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTG
* *
583067 ATGTTATTCTTTACTTTCTCGTGAAT
65 ATGTTATTCTTGACTTTCTCGTGAAG
* *
583093 AGGTGTCAATCTTTTAGTGTTGTCTTCCTCGACTTTCTCGTGAAGAGGAGTCAATC-TTTAGTG-
1 AGGAGTCAATCTTTTAGTGTTGTCTTCCTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGA
* * * *
583156 TCGTCATTCTTGACTTTTTTGTGGAG
66 T-GTTATTCTTGACTTTCTCGTGAAG
* * * * * * * *
583182 AGAAGTCAAACTTTTAGTGATGT-TATTCTTAACTTTCTCATGAAGAGGAGTAAATC-TTTACT-
1 AGGAGTCAATCTTTTAGTGTTGTCT-TCCTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTG
* * *
583244 ATTTTCATTCTTGACTTTTTTGTGAAG
65 ATGTT-ATTCTTGACTTTCTCGTGAAG
* * * ** *
583271 ACGAGTCAATC-TTTAGTGATGTCATT-CTTGACTTTCTCCTGAAGATAAGTCAACCTTTTAGTG
1 AGGAGTCAATCTTTTAGTGTTGTC-TTCCTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTG
* * * *
583334 -TGGTCATTCTTGAATTTCTCCTAAAG
65 AT-GTTATTCTTGACTTTCTCGTGAAG
* * * *
583360 AGGAGTCAATC-TTTAGTGTTGTCATT--TTTACTTTTTTGTGAAGAGAAGTCAATCTTTTAGT-
1 AGGAGTCAATCTTTTAGTGTTGTC-TTCCTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTG
* *
583421 A--TTATCAACTTGACTTTCTCATGAAG
65 ATGTTAT--TCTTGACTTTCTCGTGAAG
* * * * *
583447 AGGAGTTAATCTTTTAGTGTTATATTCCTTGACTTTCTCGCGAAGAGGAGTCATTCTTTTAGTG-
1 AGGAGTCAATCTTTTAGTGTTGTCTTCCTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGA
* *
583511 T-TATCTTCCTTGACTTTC-CTGTAAAG
66 TGT-TATT-CTTGACTTTCTC-GTGAAG
* * * * * * * *
583537 AAGAGTCAATGTTTCAGTATTGTCATT-CTTGACTTTCTCATGAAGAGAAGTCCATCTTTCAGTG
1 AGGAGTCAATCTTTTAGTGTTGTC-TTCCTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTG
* * * * *
583601 TTATGATCCTTGACTTTCTCAG-AAAG
65 ATGTTATTCTTGACTTTCTC-GTGAAG
*
583627 AGGAGTCAA-CATTTTAGTGATGTC
1 AGGAGTCAATC-TTTTAGTGTTGTC
583651 ATTCTCAACT
Statistics
Matches: 501, Mismatches: 118, Indels: 56
0.74 0.17 0.08
Matches are distributed among these distances:
85 3 0.01
87 27 0.05
88 76 0.15
89 251 0.50
90 135 0.27
91 8 0.02
92 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.42
Consensus pattern (90 bp):
AGGAGTCAATCTTTTAGTGTTGTCTTCCTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGA
TGTTATTCTTGACTTTCTCGTGAAG
Found at i:583446 original size:44 final size:45
Alignment explanation
Indices: 582914--583655 Score: 589
Period size: 45 Copynumber: 16.6 Consensus size: 45
582904 ATATTGTTAA
* * **
582914 AGGAGTCAATCTTTTAGTGTTATC-TTCATTTACTTTCTCACGAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTC-TTGACTTTCTCGTGAAG
* * *
582959 CGGAGT-AGATCTTTTAGTGTTGTTC-TACTTTACTTTCTCGTGAAG
1 AGGAGTCA-ATCTTTTAGTGTTG-TCATTCTTGACTTTCTCGTGAAG
** * * * ** * *
583004 AAAAGTCAACCTTTTACTGGTGTTGTTCTTGACTTCCTCGTGGAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
* * * * * * *
583049 AGAACT-AACCTTTTAGTGATGTTATTCTTTACTTTCTCGTGAAT
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
* *
583093 AGGTGTCAATCTTTTAGTGTTGTC-TTCCTCGACTTTCTCGTGAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATT-CTTGACTTTCTCGTGAAG
* * * *
583138 AGGAGTCAATC-TTTAGTGTCGTCATTCTTGACTTTTTTGTGGAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
* * * * * *
583182 AGAAGTCAAACTTTTAGTGATGTTATTCTTAACTTTCTCATGAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
* * * * * *
583227 AGGAGTAAATC-TTTACTATTTTCATTCTTGACTTTTTTGTGAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
* * *
583271 ACGAGTCAATC-TTTAGTGATGTCATTCTTGACTTTCTCCTGAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
** * * * * *
583315 ATAAGTCAACCTTTTAGTGTGGTCATTCTTGAATTTCTCCTAAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
* * *
583360 AGGAGTCAATC-TTTAGTGTTGTCATT-TTTACTTTTTTGTGAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
* * * * *
583403 AGAAGTCAATCTTTTAGTATTATCA-ACTTGACTTTCTCATGAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
* * *
583447 AGGAGTTAATCTTTTAGTGTTAT-ATTCCTTGACTTTCTCGCGAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATT-CTTGACTTTCTCGTGAAG
* * *
583492 AGGAGTCATTCTTTTAGTGTTATC-TTCCTTGACTTTC-CTGTAAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATT-CTTGACTTTCTC-GTGAAG
* * * * *
583537 AAGAGTCAATGTTTCAGTATTGTCATTCTTGACTTTCTCATGAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
* * * * * * *
583582 AGAAGTCCATCTTTCAGTGTTATGATCCTTGACTTTCTCAG-AAAG
1 AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTC-GTGAAG
*
583627 AGGAGTCAA-CATTTTAGTGATGTCATTCT
1 AGGAGTCAATC-TTTTAGTGTTGTCATTCT
583656 CAACTTGACT
Statistics
Matches: 547, Mismatches: 131, Indels: 38
0.76 0.18 0.05
Matches are distributed among these distances:
43 22 0.04
44 199 0.36
45 318 0.58
46 8 0.01
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (45 bp):
AGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAG
Found at i:583466 original size:132 final size:134
Alignment explanation
Indices: 582917--583655 Score: 551
Period size: 133 Copynumber: 5.5 Consensus size: 134
582907 TTGTTAAAGG
* * * ** *
582917 AGTCAATCTTTTAGTGTTATCTTCATTTACTTTCTCACGAAGCGGAGT-AGATCTTTTAGTGTTG
1 AGTCAATCTTTTAGTGTTATATTC-TTGAATTTCTCATAAAGAGGAGTCA-ATCTTTTAGTGTTG
* * * * * * * ** ** * *
582981 TTC-TACTTTACTTTCTCGTGAAGAAAAGTCAACCTTTTACTGGTGTTGTTCTTGACTTCCTCGT
64 -TCATTCTTGACTTTTTTGTGAAGAGAAGTCAATCTTTTAGTATTGTCATTCTTGACTTTCTCAT
*
583045 GGAGAGA
128 GAAGAGA
* * * * * * * *
583052 ACT-AACCTTTTAGTGATGT-TATTCTTTACTTTCTCGTGAATAGGTGTCAATCTTTTAGTGTTG
1 AGTCAATCTTTTAGTG-T-TATATTCTTGAATTTCTCATAAAGAGGAGTCAATCTTTTAGTGTTG
* * * * * * * **
583115 TC-TTCCTCGACTTTCTCGTGAAGAGGAGTCAATC-TTTAGTGTCGTCATTCTTGACTTTTTTGT
64 TCATT-CTTGACTTTTTTGTGAAGAGAAGTCAATCTTTTAGTATTGTCATTCTTGACTTTCTCAT
*
583178 GGAGAGA
128 GAAGAGA
* * * * *
583185 AGTCAAACTTTTAGTGATGT-TATTCTT-AACTTTCTCATGAAGAGGAGTAAATC-TTTACTATT
1 AGTCAATCTTTTAGTG-T-TATATTCTTGAA-TTTCTCATAAAGAGGAGTCAATCTTTTAGTGTT
*
583247 TTCATTCTTGACTTTTTTGTGAAGACG-AGTCAATC-TTTAGTGA-TGTCATTCTTGACTTTCTC
63 GTCATTCTTGACTTTTTTGTGAAGA-GAAGTCAATCTTTTAGT-ATTGTCATTCTTGACTTTCTC
* *
583309 CTGAAGATA
126 ATGAAGAGA
* ** *
583318 AGTCAACCTTTTAGTGTGGTCATTCTTGAATTTCTCCTAAAGAGGAGTCAATC-TTTAGTGTTGT
1 AGTCAATCTTTTAGTGTTAT-ATTCTTGAATTTCTCATAAAGAGGAGTCAATCTTTTAGTGTTGT
* * *
583382 CATT-TTTACTTTTTTGTGAAGAGAAGTCAATCTTTTAGTATTATCA-ACTTGACTTTCTCATGA
65 CATTCTTGACTTTTTTGTGAAGAGAAGTCAATCTTTTAGTATTGTCATTCTTGACTTTCTCATGA
*
583445 AGAGG
130 AGAGA
* * *** * *
583450 AGTTAATCTTTTAGTGTTATATTCCTTGACTTTCTCGCGAAGAGGAGTCATTCTTTTAGTGTTAT
1 AGTCAATCTTTTAGTGTTATATT-CTTGAATTTCTCATAAAGAGGAGTCAATCTTTTAGTGTTGT
** * * *
583515 C-TTCCTTGACTTTCCTGTAAAGA-AGAGTCAATGTTTCAGTATTGTCATTCTTGACTTTCTCAT
65 CATT-CTTGACTTTTTTGTGAAGAGA-AGTCAATCTTTTAGTATTGTCATTCTTGACTTTCTCAT
583578 GAAGAGA
128 GAAGAGA
* * * * * *
583585 AGTCCATCTTTCAGTGTTATGATCCTTGACTTTCTCAGAAAGAGGAGTCAA-CATTTTAGTGATG
1 AGTCAATCTTTTAGTGTTAT-ATTCTTGAATTTCTCATAAAGAGGAGTCAATC-TTTTAGTGTTG
583649 TCATTCT
64 TCATTCT
583656 CAACTTGACT
Statistics
Matches: 495, Mismatches: 85, Indels: 48
0.79 0.14 0.08
Matches are distributed among these distances:
131 4 0.01
132 88 0.18
133 170 0.34
134 147 0.30
135 81 0.16
136 5 0.01
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (134 bp):
AGTCAATCTTTTAGTGTTATATTCTTGAATTTCTCATAAAGAGGAGTCAATCTTTTAGTGTTGTC
ATTCTTGACTTTTTTGTGAAGAGAAGTCAATCTTTTAGTATTGTCATTCTTGACTTTCTCATGAA
GAGA
Found at i:583720 original size:51 final size:51
Alignment explanation
Indices: 583609--583751 Score: 152
Period size: 51 Copynumber: 2.8 Consensus size: 51
583599 TGTTATGATC
* * *
583609 CTTGACTTTCTCAG-AAAGAGGAGTCAACATTTT-AGT-G-ATGTCATTCTCAA
1 CTTGACTTTCTC-GCAATGAGGAGTCAAC-TTTTCAGTAGTAT-CCTTTCTCAA
* *
583659 CTTGACTTTCTCGCGGAT-ATGAGTCAACTTTTCAGTAGTATCCTTTCTCAA
1 CTTGACTTTCTCGC-AATGAGGAGTCAACTTTTCAGTAGTATCCTTTCTCAA
* *
583710 CTTGACTTTCTCGCAATGAGGTGTCAACTTTTTAGTAGTATC
1 CTTGACTTTCTCGCAATGAGGAGTCAACTTTTCAGTAGTATC
583752 ATTCCTCGAC
Statistics
Matches: 78, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
49 5 0.06
50 26 0.33
51 45 0.58
52 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.38
Consensus pattern (51 bp):
CTTGACTTTCTCGCAATGAGGAGTCAACTTTTCAGTAGTATCCTTTCTCAA
Found at i:584675 original size:134 final size:133
Alignment explanation
Indices: 584492--585308 Score: 850
Period size: 134 Copynumber: 6.1 Consensus size: 133
584482 GAATAGTAGC
* * * * ** * * * *
584492 GAAGCAAATCAAGTTAGATTTAATCTTCTTTAAAGAGCAGCGAATTGGATCAAAATGTTTTCGAG
1 GAAGCAAATCGATTTTGATTCAATCTTCCCTGAAGAGTAGTGAAGTGGATCAAAAT-TTTTCGAG
* * * * * * * * *
584557 TCTAATCTCCACTAAAGTGTAATGGAGCACATTTTTCTTCTTTCAAATTTGGTATTCTTAAAGAG
65 TCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTATTCCTGAAGAG
*
584622 AAGT
130 CAGT
* ** * *
584626 GAAGCAAATCGATTTTGATTCAATCTTCCCTAAAGACCAATGAAGTGGATCAAAATTTTTTCAAG
1 GAAGCAAATCGATTTTGATTCAATCTTCCCTGAAGAGTAGTGAAGTGGATCAAAA-TTTTTCGAG
* * * * *
584691 TCTGATCTCCCCTAAAAAGTAGTGGAGCAGATGCTTCTTCTTTCAGATTGGGTCTTCCTAAAGAG
65 TCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTATTCCTGAAGAG
584756 CAGT
130 CAGT
* ** * * *
584760 GAAACAAATCGATCATGATTCAATCTTCCCTGAAGAATATTGAAGTGGATCAAAGTTTTCTCGAG
1 GAAGCAAATCGATTTTGATTCAATCTTCCCTGAAGAGTAGTGAAGTGGATCAAAATTTT-TCGAG
* * * * * *
584825 TATGATCTCCCTTAAAGAGTAGTGGAGCAGATTCTTCTTCTTTTATATTTGGTATTCTTGAAGAC
65 TCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTATTCCTGAAGAG
*
584890 CAGC
130 CAGT
* * *
584894 GAAGCAAATC-ATGTTTGATTCAATCTTTCCTGAAGAGTAGTGAAGTAGATCAAAGATTTCTCGA
1 GAAGCAAATCGAT-TTTGATTCAATCTTCCCTGAAGAGTAGTGAAGTGGATCAAA-ATTTTTCGA
* * * *
584958 GTTTGATCTCCCCTAAAAAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTAGGTCTTCCTGAAGA
64 GTCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTATTCCTGAAGA
585023 GCAGT
129 GCAGT
** * * * **
585028 GAAAAAAATTGATTTTGATTCAATCTTCCATGAAGAGTAGTAAAGTGGATCAAAAAAAATTTCGA
1 GAAGCAAATCGATTTTGATTCAATCTTCCCTGAAGAGTAGTGAAGTGGATC--AAAATTTTTCGA
* * * *
585093 GTCTGTTCTCCCATAAAGAGTAGTGGAGCTGACGTT-TT-TTCTTTTAGATTTGGTATTCCTGAA
64 GTCTGATCTCCCCTAAAGAGTAGTGGAGCAGA--TTCTTCTTCTTTCAGATTTGGTATTCCTGAA
*
585156 GAACAGT
127 GAGCAGT
* ** * * * *
585163 GAA-AAAATTTATTCTGATTCAATCTTCCCTGAAGAATAGTGAAGTGGATCAAAGTTTCTCGAGT
1 GAAGCAAATCGATTTTGATTCAATCTTCCCTGAAGAGTAGTGAAGTGGATCAAAATTTTTCGAGT
* * * * *
585227 CTGATCTCCCCAAAAGAGTAGTGTAGCATATTCTTCTTCTTTCATATTTGTTATTCCTGAAGAGC
66 CTGATCTCCCCTAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTATTCCTGAAGAGC
585292 AGT
131 AGT
*
585295 GAAGTAAATCGATT
1 GAAGCAAATCGATT
585309 CCGTTTCAAT
Statistics
Matches: 566, Mismatches: 105, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
130 2 0.00
131 2 0.00
132 65 0.11
133 13 0.02
134 407 0.72
135 70 0.12
136 5 0.01
137 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (133 bp):
GAAGCAAATCGATTTTGATTCAATCTTCCCTGAAGAGTAGTGAAGTGGATCAAAATTTTTCGAGT
CTGATCTCCCCTAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTATTCCTGAAGAGC
AGT
Found at i:585183 original size:402 final size:401
Alignment explanation
Indices: 584489--585304 Score: 992
Period size: 402 Copynumber: 2.0 Consensus size: 401
584479 CCAGAATAGT
* * * * *
584489 AGCGAAGCAAATCAAGTTAGATTTAATCTTCTTTAAAGAGCAGCGAATTGGATCAAAATGTTTTC
1 AGCGAAGCAAATCAAGTTAGATTCAATCTTCTCTAAAGAGCAGCGAAGTAGATCAAAATGTTCTC
** * * *
584554 GAGTCTAATCTCCACTAAAGTGTAATGGAGCACATTTTTCTTCTTTCAAATTTGGTATTCTTAAA
66 GAGTCTAATCTCCACTAAAAAGTAATGGAGCACATTCTTCTTCTTTCAAATTAGGTATTCCTAAA
** * * ***
584619 GAGAAGTGAAGCAAATCGATTTTGATTCAATCTTCCCTAAAGACCAATGAAGTGGATCAAAATTT
131 GAGAAGTGAAAAAAATCGATTTTGATTCAATCTTCCATAAAGACCAATAAAGTGGATCAAAAAAA
* * *
584684 TTTCAAGTCTGATCTCCCCTAAAAAGTAGTGGAGCAGATGCTTCTTCTTTCAGATTGGGTCTTCC
196 TTTCAAGTCTGATCTCCCATAAAAAGTAGTGGAGCAGACGCTTCTTCTTTCAGATTGGGTATTCC
* *
584749 TAAAGAGCAGTGAAACAAATCGATCATGATTCAATCTTCCCTGAAGAATATTGAAGTGGATCAAA
261 TAAAGAACAGTGAAACAAATCGATCATGATTCAATCTTCCCTGAAGAATAGTGAAGTGGATCAAA
** *
584814 GTTTTCTCGAGTATGATCTCCCTTAAAGAGTAGTGGAGCAGATTCTTCTTCTTTTATATTTGGTA
326 G-TTTCTCGAGTATGATCTCCCCAAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCATATTTGGTA
*
584879 TTCTTGAAGACC
390 TTCCTGAAGACC
* * * * *
584891 AGCGAAGCAAATCATGTTTGATTCAATCTT-TCCTGAAGAGTAGTGAAGTAGATCAAAGAT-TTC
1 AGCGAAGCAAATCAAGTTAGATTCAATCTTCT-CTAAAGAGCAGCGAAGTAGATCAAA-ATGTTC
* * * * * * * *
584954 TCGAGTTTGATCTCCCCTAAAAAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTAGGTCTTCCTG
64 TCGAGTCTAATCTCCACTAAAAAGTAATGGAGCACATTCTTCTTCTTTCAAATTAGGTATTCCTA
* * * ** *
585019 AAGAGCAGTGAAAAAAATTGATTTTGATTCAATCTTCCATGAAGAGTAGTAAAGTGGATCAAAAA
129 AAGAGAAGTGAAAAAAATCGATTTTGATTCAATCTTCCATAAAGACCAATAAAGTGGATC-AAAA
* * * * * * * *
585084 AAATTTCGAGTCTGTTCTCCCATAAAGAGTAGTGGAGCTGACGTTTTTTCTTTTAGATTTGGTAT
193 AAATTTCAAGTCTGATCTCCCATAAAAAGTAGTGGAGCAGACGCTTCTTCTTTCAGATTGGGTAT
* **
585149 TCCTGAAGAACAGTGAAA-AAATTTATTC-TGATTCAATCTTCCCTGAAGAATAGTGAAGTGGAT
258 TCCTAAAGAACAGTGAAACAAATCGA-TCATGATTCAATCTTCCCTGAAGAATAGTGAAGTGGAT
* * *
585212 CAAAGTTTCTCGAGTCTGATCTCCCCAAAAGAGTAGTGTAGCATATTCTTCTTCTTTCATATTTG
322 CAAAGTTTCTCGAGTATGATCTCCCCAAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCATATTTG
* *
585277 TTATTCCTGAAGAGC
387 GTATTCCTGAAGACC
* *
585292 AGTGAAGTAAATC
1 AGCGAAGCAAATC
585305 GATTCCGTTT
Statistics
Matches: 347, Mismatches: 63, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
401 78 0.22
402 194 0.56
403 75 0.22
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (401 bp):
AGCGAAGCAAATCAAGTTAGATTCAATCTTCTCTAAAGAGCAGCGAAGTAGATCAAAATGTTCTC
GAGTCTAATCTCCACTAAAAAGTAATGGAGCACATTCTTCTTCTTTCAAATTAGGTATTCCTAAA
GAGAAGTGAAAAAAATCGATTTTGATTCAATCTTCCATAAAGACCAATAAAGTGGATCAAAAAAA
TTTCAAGTCTGATCTCCCATAAAAAGTAGTGGAGCAGACGCTTCTTCTTTCAGATTGGGTATTCC
TAAAGAACAGTGAAACAAATCGATCATGATTCAATCTTCCCTGAAGAATAGTGAAGTGGATCAAA
GTTTCTCGAGTATGATCTCCCCAAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCATATTTGGTAT
TCCTGAAGACC
Found at i:587476 original size:17 final size:16
Alignment explanation
Indices: 587447--587488 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
587437 AACGTAGATC
587447 AATT-TTTTATCTTTTAA
1 AATTATTTTATC--TTAA
587464 AATTATTTT-TCTTAA
1 AATTATTTTATCTTAA
587479 AATTATTTTA
1 AATTATTTTA
587489 AAAGGTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 13 0.57
17 6 0.26
18 4 0.17
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (16 bp):
AATTATTTTATCTTAA
Found at i:589557 original size:2 final size:2
Alignment explanation
Indices: 589552--589589 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
589542 TATTCTTTTA
589552 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
589590 TAATGTTAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:608136 original size:9 final size:8
Alignment explanation
Indices: 608122--608161 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
608112 GGAGATTTAG
608122 AAATAATGA
1 AAATAAT-A
608131 AAATAATA
1 AAATAATA
608139 AAATAAT-
1 AAATAATA
608146 AAA-AAT-
1 AAATAATA
608152 AAATAATA
1 AAATAATA
608160 AA
1 AA
608162 TAAATGATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.21
7 6 0.21
8 10 0.34
9 7 0.24
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (8 bp):
AAATAATA
Found at i:609121 original size:25 final size:25
Alignment explanation
Indices: 609087--609147 Score: 97
Period size: 25 Copynumber: 2.4 Consensus size: 25
609077 TGTATGTATC
*
609087 TTCAAGATAATTTC-AAATTAAAATA
1 TTCAAGATAATTCCAAAATT-AAATA
609112 TTCAAGATAATTCCAAAATTAAATA
1 TTCAAGATAATTCCAAAATTAAATA
609137 TTCAAGATAAT
1 TTCAAGATAAT
609148 GCTGATTGGA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 29 0.85
26 5 0.15
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.34
Consensus pattern (25 bp):
TTCAAGATAATTCCAAAATTAAATA
Found at i:617590 original size:6 final size:6
Alignment explanation
Indices: 617579--617612 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
617569 ATTAACACCT
*
617579 TTTGCA TTTGCA TTTGGCA TTTACA TTTGCA TTT
1 TTTGCA TTTGCA TTT-GCA TTTGCA TTTGCA TTT
617613 ACACTGCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (6 bp):
TTTGCA
Found at i:617610 original size:12 final size:12
Alignment explanation
Indices: 617579--617615 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
617569 ATTAACACCT
*
617579 TTTGCATTTGCA
1 TTTGCATTTACA
617591 TTTGGCATTTACA
1 TTT-GCATTTACA
617604 TTTGCATTTACA
1 TTTGCATTTACA
617616 CTGCTTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.49
Consensus pattern (12 bp):
TTTGCATTTACA
Found at i:619267 original size:35 final size:35
Alignment explanation
Indices: 619216--619287 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
619206 CACTGAAAAA
619216 TGCATACCATTGATGGAAGAGAAAGAAAAGCTCGT
1 TGCATACCATTGATGGAAGAGAAAGAAAAGCTCGT
* * * *
619251 TGCATACCATTTATGGAATAGATAGAAAATCTCGT
1 TGCATACCATTGATGGAAGAGAAAGAAAAGCTCGT
619286 TG
1 TG
619288 AAAGGGTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (35 bp):
TGCATACCATTGATGGAAGAGAAAGAAAAGCTCGT
Found at i:622355 original size:42 final size:41
Alignment explanation
Indices: 622287--622384 Score: 124
Period size: 42 Copynumber: 2.4 Consensus size: 41
622277 AATTGGTAAG
** *
622287 TCCTTCGGGCCATCAATAAGCCTTTCGAGCAAGATGATTAAA
1 TCCTTCGGGCCATCTGTAAGCCTTTCGAGAAAGATGA-TAAA
* * * *
622329 TCCTTTGGGTCATCTGTAAGTCTTTCGAGAAAGATGATAAG
1 TCCTTCGGGCCATCTGTAAGCCTTTCGAGAAAGATGATAAA
622370 TCCTTCGGGCCATCT
1 TCCTTCGGGCCATCT
622385 ATAATACCTT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 16 0.34
42 31 0.66
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (41 bp):
TCCTTCGGGCCATCTGTAAGCCTTTCGAGAAAGATGATAAA
Found at i:622499 original size:259 final size:256
Alignment explanation
Indices: 622029--622977 Score: 1195
Period size: 258 Copynumber: 3.7 Consensus size: 256
622019 CTTACTTAGC
* * * * * *
622029 AAGT-CTTCGGGCCATCAGTAAGTCTTTTAAGCATGATGATTAAATCCTTCGGGTCATCTCTCAG
1 AAGTCCTTCGGGCCATCAATAAGCCTTTCAAGCAAGATGATTAAATCCTTCGGGTCATCTGTAAG
* * * * ** * *
622093 TATTTCAAGCAAGATGATAAGTCATTCGGGTCATCCGTAACACCTTC-GGTAGGATGCTTTCACA
66 TCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGCAGGATG-TTTCACA
* * * * *
622157 TGAATTTGAAAAATGGGAAAGCGATTTTCAAAGTTTTTCATTTAGTATTTTCAGAAAATGAAATT
130 TGATTTTAAAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTGTTTTCAGAAAATGAAATT
*
622222 TTTCAAAAGTAAGAAAGCGATTTTCAAAGTTTCTTACCCAGTAGACTATTTCCAAAATTGGT
195 TTTGAAAAGTAAGAAAGCGATTTTCAAAGTTTCTTACCCAGTAGACTATTTCCAAAATTGGT
* *
622284 AAGTCCTTCGGGCCATCAATAAGCCTTTCGAGCAAGATGATTAAATCCTTTGGGTCATCTGTAAG
1 AAGTCCTTCGGGCCATCAATAAGCCTTTCAAGCAAGATGATTAAATCCTTCGGGTCATCTGTAAG
* * * *
622349 TCTTTCGAGAAAGATGATAAGTCCTTCGGGCCATCTATAATACCTTCGGGCATGATGTTTCCAAA
66 TCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTT-CACA
* * *
622414 TGATTTTAAAAAAAATGAGAAAGCGATTTCCAAAGTTTCTGATTTTGTGTTTTCAGAAAATGAAA
130 TGATTTT--AAAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTGTTTTCAGAAAATGAAA
* * * *
622479 TTTTTGAAAAGTAGGAAAGCGATTTTCAAAGTTTCTTAGCCAGTAGACTATTTCTAAAGTTGGT
193 TTTTTGAAAAGTAAGAAAGCGATTTTCAAAGTTTCTTACCCAGTAGACTATTTCCAAAATTGGT
* * *
622543 AAGTCCTTCGGG-CATTAGTAAGCCTTTCAAGCATGATGATTAAATCCTTCGGGTCATCTGTAAG
1 AAGTCCTTCGGGCCATCAATAAGCCTTTCAAGCAAGATGATTAAATCCTTCGGGTCATCTGTAAG
* *
622607 TCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTTGGGCAGGATGTTTTCACG
66 TCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGCAGGATG-TTTCACA
* ** * * *
622672 TAATTTTCAAAAAATGAGAAAATGATTTTCAAAGCTTCTCATTTAGTGTTTCCAAAAAATGAAAT
130 TGATTTT-AAAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTGTTTTCAGAAAATGAAAT
* * * * *
622737 TTTTGAAAAGTAAGAAAGAGATTTCCAAAGTTTCTTACCCAATAAAATATTTCCAAAATTGGT
194 TTTTGAAAAGTAAGAAAGCGATTTTCAAAGTTTCTTACCCAGTAGACTATTTCCAAAATTGGT
* * *
622800 AAGTCCTTCGGGCCATCAATAAGTCTTTCGAA-CAAGATGATTAAATCCTTTGGGTCATCTGTCA
1 AAGTCCTTCGGGCCATCAATAAGCCTTTC-AAGCAAGATGATTAAATCCTTCGGGTCATCTGTAA
* * * * * * ** *
622864 GTCTTTCGAGCAAGATAATAAGTCTTTCGAGCCGTCTATAAGACCTTTGGGGAATATGCTTTCAT
65 GTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGCAGGATG-TTTCAC
* *
622929 ATGGTATTTGTAAGAAAATGAGAAAGTGATTTTCAAAATTTCTCATTTA
129 AT-G-ATTT-TAA-AAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTA
622978 AATTATTTTA
Statistics
Matches: 600, Mismatches: 82, Indels: 18
0.86 0.12 0.03
Matches are distributed among these distances:
255 4 0.01
256 94 0.16
257 131 0.22
258 207 0.34
259 125 0.21
260 6 0.01
261 33 0.05
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (256 bp):
AAGTCCTTCGGGCCATCAATAAGCCTTTCAAGCAAGATGATTAAATCCTTCGGGTCATCTGTAAG
TCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTCACAT
GATTTTAAAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTGTTTTCAGAAAATGAAATTT
TTGAAAAGTAAGAAAGCGATTTTCAAAGTTTCTTACCCAGTAGACTATTTCCAAAATTGGT
Found at i:622632 original size:41 final size:41
Alignment explanation
Indices: 622542--622653 Score: 129
Period size: 41 Copynumber: 2.7 Consensus size: 41
622532 CTAAAGTTGG
*
622542 TAAGTCCTTCGGGCAT-TAGTAAGCCTTTCAAGCATGATGAT
1 TAAGTCCTTCGGGCATCT-GTAAGCCTTTCAAGCAAGATGAT
* * *
622583 TAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGA-
1 TAAGTCCTTCGGG-CATCTGTAAGCCTTTCAAGCAAGATGAT
*
622624 TAAGTCCTTCGGGCCATCTATAAGACCTTT
1 TAAGTCCTTCGGG-CATCTGTAAG-CCTTT
622654 GGGCAGGATG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
41 33 0.55
42 26 0.43
43 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (41 bp):
TAAGTCCTTCGGGCATCTGTAAGCCTTTCAAGCAAGATGAT
Found at i:623347 original size:50 final size:51
Alignment explanation
Indices: 623293--623430 Score: 163
Period size: 51 Copynumber: 2.7 Consensus size: 51
623283 TCTTGTGATT
*
623293 CTTGACTTTCTCAGAAAGAGGAGTCAACCTTTT-AGT-GATGTCATTGTCAA
1 CTTGACTTTCTCACAAAGAGGAGTCAA-CTTTTGAGTAGATGTCATTGTCAA
* * * *
623343 CTTGACTTTCTCACAGAGAGGAGTCAACTTTTGAGTAGATGTCATTCTTAC
1 CTTGACTTTCTCACAAAGAGGAGTCAACTTTTGAGTAGATGTCATTGTCAA
* * * * *
623394 CTTGATTTTCTCGCAAAGGGGAGTCGACTTTTCAGTA
1 CTTGACTTTCTCACAAAGAGGAGTCAACTTTTGAGTA
623431 ATACATTGCA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
49 5 0.07
50 28 0.37
51 42 0.56
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (51 bp):
CTTGACTTTCTCACAAAGAGGAGTCAACTTTTGAGTAGATGTCATTGTCAA
Found at i:623989 original size:135 final size:135
Alignment explanation
Indices: 623713--624300 Score: 670
Period size: 135 Copynumber: 4.5 Consensus size: 135
623703 GTTCGATCTT
* * * * * * * *
623713 TGAAACAAATCA-AGTTCGATTCAGTCTTCCCTGAAAAACAGTGAAGTGGATCAAAGTTTTTCTT
1 TGAAGCAAATCACA-TTCGATTCAATCTTCCCTGAAGAGCAGCGAAGTGAATCAAA-ATTTTCTC
* * * * * * *
623777 GAGTCTGACATCCCCTAAAGAGTAGCGGAGCA-A------ATTATTTGAAATTTGGTCTTCCTAA
64 GAGTCTGACCTCCCCTAAAGAGTAGTGGAGCAGATTCTTTCTTCTTTCAGATTTGGTCTTCCTGA
*
623835 AGAGTAG
129 AGAGAAG
* * *
623842 TGAACCAAATCACATTCGATTCAATCTTCCCTGAAGAGAAACGAAGTGAATCAAAATTTTCTCGA
1 TGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGCAGCGAAGTGAATCAAAATTTTCTCGA
* * *** * *
623907 GTTTGACCTCCCCTAAATAGTAACAGAGCAGATTCTTTGTTCTCTCAGATTTGGTCTTCCTGAAG
66 GTCTGACCTCCCCTAAAGAGTAGTGGAGCAGATTCTTTCTTCTTTCAGATTTGGTCTTCCTGAAG
623972 AGAAG
131 AGAAG
*
623977 TGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGCAGTGAAGTGAATCAAAATTTTCTCGA
1 TGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGCAGCGAAGTGAATCAAAATTTTCTCGA
* *
624042 GTCTGACCTCCCCTAAAGAGTAGTGGAGCATATTATTTCTTCTTTCAGATTTGGTCTTCCTGAAG
66 GTCTGACCTCCCCTAAAGAGTAGTGGAGCAGATTCTTTCTTCTTTCAGATTTGGTCTTCCTGAAG
*
624107 AGCAG
131 AGAAG
* * * *
624112 TGAAACAAATCACATTCGATTTAATCTTCTC-GAAGAGCAGCAAAGTGAATCAAAATTTTCTCGA
1 TGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGCAGCGAAGTGAATCAAAATTTTCTCGA
*
624176 GTCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTC-TTCTTCTTTCAGATTTGGTCTTCCT-AA-
66 GTCTGACCTCCCCTAAAGAGTAGTGGAGCAGATTCTTTCTTCTTTCAGATTTGGTCTTCCTGAAG
624238 A-AA-
131 AGAAG
* * * *
624241 --ACAGCAAATCA-AGTTTGATTCAATCTTCTCTGAAGAGCAGCGAAGTGAATTAAATTTTTC
1 TGA-AGCAAATCACA-TTCGATTCAATCTTCCCTGAAGAGCAGCGAAGTGAATCAAAATTTTC
624301 AGATCTAGTT
Statistics
Matches: 397, Mismatches: 51, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
127 2 0.01
128 56 0.14
129 72 0.18
130 2 0.01
131 1 0.00
132 2 0.01
133 25 0.06
134 63 0.16
135 174 0.44
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (135 bp):
TGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGCAGCGAAGTGAATCAAAATTTTCTCGA
GTCTGACCTCCCCTAAAGAGTAGTGGAGCAGATTCTTTCTTCTTTCAGATTTGGTCTTCCTGAAG
AGAAG
Found at i:624263 original size:263 final size:261
Alignment explanation
Indices: 623718--624300 Score: 730
Period size: 263 Copynumber: 2.2 Consensus size: 261
623708 ATCTTTGAAA
* * * * *
623718 CAAATCAAGTTCGATTCAGTCTTCCCTGAAAAACAGTGAAGTGGATCAAAGTTTTTCTTGAGTCT
1 CAAATCAAGTTCGATTCAATCTTCCCTGAAGAGCAGTGAAGTGAATCAAA-TTTTTCTCGAGTCT
* * *
623783 GACATCCCCTAAAGAGTAGCGGAGCAAATTATTTGAAATTTGGTCTTCCTAAAGAGTAGTGAACC
65 GACATCCCCTAAAGAGTAGCGGAGCAAATTATTTCAAATTTGGTCTTCCTAAAGAGCAGTGAAAC
* *
623848 AAATCACATTCGATTCAATCTTCCCTGAAGAGAAACGAAGTGAATCAAAATTTTCTCGAGTTTGA
130 AAATCACATTCGATTCAATCTTCCCTGAAGAGAAACAAAGTGAATCAAAATTTTCTCGAGTCTGA
* *
623913 CCTCCCCTAAATAGTAACAGAGCAGATTCTTTGTTCTCTCAGATTTGGTCTTCCTGAAGAGAAGT
195 CCTCCCCTAAAGAGTAACAGAGCAGATTCTTTCTTCTCTCAGATTTGGTCTTCCTGAAGAGAA--
623978 GAAG
258 GAAG
*
623982 CAAATCACA-TTCGATTCAATCTTCCCTGAAGAGCAGTGAAGTGAATCAAAATTTTCTCGAGTCT
1 CAAATCA-AGTTCGATTCAATCTTCCCTGAAGAGCAGTGAAGTGAATCAAATTTTTCTCGAGTCT
* * * * *
624046 GACCTCCCCTAAAGAGTAGTGGAGCATATTATTTCTTCTTTCAGATTTGGTCTTCCTGAAGAGCA
65 GACATCCCCTAAAGAGTAGCGGAGCA-A--A----TTATTTCAAATTTGGTCTTCCTAAAGAGCA
* * * *
624111 GTGAAACAAATCACATTCGATTTAATCTTCTC-GAAGAGCAGCAAAGTGAATCAAAATTTTCTCG
123 GTGAAACAAATCACATTCGATTCAATCTTCCCTGAAGAGAAACAAAGTGAATCAAAATTTTCTCG
* *** *
624175 AGTCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTC-TTCTTCTTTCAGATTTGGTCTTCCT-AA
188 AGTCTGACCTCCCCTAAAGAGTAACAGAGCAGATTCTTTCTTCTCTCAGATTTGGTCTTCCTGAA
624238 -A-AA-ACAG
253 GAGAAGA-AG
* * * *
624245 CAAATCAAGTTTGATTCAATCTTCTCTGAAGAGCAGCGAAGTGAATTAAATTTTTC
1 CAAATCAAGTTCGATTCAATCTTCCCTGAAGAGCAGTGAAGTGAATCAAATTTTTC
624301 AGATCTAGTT
Statistics
Matches: 277, Mismatches: 32, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
262 2 0.01
263 87 0.31
264 45 0.16
265 3 0.01
266 2 0.01
267 2 0.01
268 23 0.08
269 59 0.21
270 54 0.19
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (261 bp):
CAAATCAAGTTCGATTCAATCTTCCCTGAAGAGCAGTGAAGTGAATCAAATTTTTCTCGAGTCTG
ACATCCCCTAAAGAGTAGCGGAGCAAATTATTTCAAATTTGGTCTTCCTAAAGAGCAGTGAAACA
AATCACATTCGATTCAATCTTCCCTGAAGAGAAACAAAGTGAATCAAAATTTTCTCGAGTCTGAC
CTCCCCTAAAGAGTAACAGAGCAGATTCTTTCTTCTCTCAGATTTGGTCTTCCTGAAGAGAAGAA
G
Found at i:633265 original size:17 final size:17
Alignment explanation
Indices: 633225--633265 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
633215 ACTGTTGATT
633225 GTTGACCGTTGACCTGC
1 GTTGACCGTTGACCTGC
*
633242 GTGGACCGTTGACC-GTC
1 GTTGACCGTTGACCTG-C
633259 GTTGACC
1 GTTGACC
633266 ACCATTGACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 1 0.05
17 20 0.95
ACGTcount: A:0.12, C:0.29, G:0.32, T:0.27
Consensus pattern (17 bp):
GTTGACCGTTGACCTGC
Found at i:636853 original size:16 final size:15
Alignment explanation
Indices: 636803--636849 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
636793 TTTGAATTGT
*
636803 TTTTAATTTGAGTTA
1 TTTTAATTTGGGTTA
*
636818 TTTTCAGTTTGGGTTTA
1 TTTT-AATTTGGG-TTA
636835 TTTTAATTTGGGTTA
1 TTTTAATTTGGGTTA
636850 ATTTCAGTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 7 0.26
16 13 0.48
17 7 0.26
ACGTcount: A:0.19, C:0.02, G:0.19, T:0.60
Consensus pattern (15 bp):
TTTTAATTTGGGTTA
Found at i:637801 original size:3 final size:3
Alignment explanation
Indices: 637793--637863 Score: 106
Period size: 3 Copynumber: 23.7 Consensus size: 3
637783 GTCATGGTTC
* * * *
637793 ATT ATT ATT ATT GTT GTT GTT GTT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
637841 ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT AT
637864 AGAGTACTAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:641595 original size:20 final size:20
Alignment explanation
Indices: 641551--641793 Score: 127
Period size: 20 Copynumber: 12.2 Consensus size: 20
641541 AATGACCAAC
641551 AAAATCGCAACGCGATATC--
1 AAAATCGCAACGCGAT-TCAG
*
641570 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTCAG
* **
641590 AAAATCGCAACGTTGA-AAAG
1 AAAATCGCAACG-CGATTCAG
641610 AAAATCGCAACG-G--TCAAAAG
1 AAAATCGCAACGCGATTC---AG
641630 AAAATCGCAACGCGATATTCCA-
1 AAAATCGCAACGCG--ATT-CAG
* ** *
641652 AGAATCGCAATACGATTAAG
1 AAAATCGCAACGCGATTCAG
*
641672 AGAATCGCAACGCGATCTTCCA-
1 AAAATCGCAACGCGA--TT-CAG
* * *
641694 AGAATCGCAATGCGATTCAA
1 AAAATCGCAACGCGATTCAG
*
641714 AAAATTGCAACGC----CA-
1 AAAATCGCAACGCGATTCAG
* *
641729 AGAATCGCAATGCGATTCAG
1 AAAATCGCAACGCGATTCAG
641749 AAAATCGCAACGCGATTCCA-
1 AAAATCGCAACGCGATT-CAG
* *
641769 AGAATCGCAATGCGATTCAG
1 AAAATCGCAACGCGATTCAG
641789 AAAAT
1 AAAAT
641794 GAGTAAATTC
Statistics
Matches: 175, Mismatches: 25, Indels: 47
0.71 0.10 0.19
Matches are distributed among these distances:
15 10 0.06
16 2 0.01
18 2 0.01
19 23 0.13
20 102 0.58
21 5 0.03
22 27 0.15
23 2 0.01
25 1 0.01
26 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (20 bp):
AAAATCGCAACGCGATTCAG
Found at i:641660 original size:22 final size:22
Alignment explanation
Indices: 641632--641709 Score: 81
Period size: 22 Copynumber: 3.6 Consensus size: 22
641622 GTCAAAAGAA
641632 AATCGCAACGCGATATTCCAAG
1 AATCGCAACGCGATATTCCAAG
** *
641654 AATCGCAATACG--ATT-AAGAG
1 AATCGCAACGCGATATTCCA-AG
*
641674 AATCGCAACGCGATCTTCCAAG
1 AATCGCAACGCGATATTCCAAG
*
641696 AATCGCAATGCGAT
1 AATCGCAACGCGAT
641710 TCAAAAAATT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
19 1 0.02
20 15 0.34
22 27 0.61
23 1 0.02
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.19
Consensus pattern (22 bp):
AATCGCAACGCGATATTCCAAG
Found at i:641678 original size:42 final size:40
Alignment explanation
Indices: 641551--641793 Score: 202
Period size: 40 Copynumber: 6.1 Consensus size: 40
641541 AATGACCAAC
* *
641551 AAAATCGCAACGCGATAT-CAA-AATCGCAACGCGATTTAG
1 AAAATCGCAACGCGAT-TCCAAGAATCGCAATGCGATTAAG
* **** * *
641590 AAAATCGCAACGTTGAAAAGAA-AATCGCAA--CGGTCAAAAG
1 AAAATCGCAACG-CGATTCCAAGAATCGCAATGCGAT--TAAG
*
641630 AAAATCGCAACGCGATATTCCAAGAATCGCAATACGATTAAG
1 AAAATCGCAACGCG--ATTCCAAGAATCGCAATGCGATTAAG
*
641672 AGAATCGCAACGCGATCTTCCAAGAATCGCAATGCGATTCAA-
1 AAAATCGCAACGCGA--TTCCAAGAATCGCAATGCGATT-AAG
* *
641714 AAAATTGCAA--CG---CCAAGAATCGCAATGCGATTCAG
1 AAAATCGCAACGCGATTCCAAGAATCGCAATGCGATTAAG
*
641749 AAAATCGCAACGCGATTCCAAGAATCGCAATGCGATTCAG
1 AAAATCGCAACGCGATTCCAAGAATCGCAATGCGATTAAG
641789 AAAAT
1 AAAAT
641794 GAGTAAATTC
Statistics
Matches: 166, Mismatches: 20, Indels: 35
0.75 0.09 0.16
Matches are distributed among these distances:
34 1 0.01
35 29 0.17
37 2 0.01
38 3 0.02
39 13 0.08
40 57 0.34
41 3 0.02
42 53 0.32
43 2 0.01
44 3 0.02
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (40 bp):
AAAATCGCAACGCGATTCCAAGAATCGCAATGCGATTAAG
Found at i:641737 original size:35 final size:37
Alignment explanation
Indices: 641648--641793 Score: 161
Period size: 35 Copynumber: 3.8 Consensus size: 37
641638 AACGCGATAT
* * *
641648 TCCAAGAATCGCAATACGATTAAGAGAATCGCAACGCG
1 TCCAAGAATCGCAATGCGATTCAGAAAATCGCAAC-CG
* *
641686 ATCTTCCAAGAATCGCAATGCGATTCAAAAAATTGCAA-CG
1 ----TCCAAGAATCGCAATGCGATTCAGAAAATCGCAACCG
641726 -CCAAGAATCGCAATGCGATTCAGAAAATCGCAACGCG
1 TCCAAGAATCGCAATGCGATTCAGAAAATCGCAAC-CG
641763 ATTCCAAGAATCGCAATGCGATTCAGAAAAT
1 --TCCAAGAATCGCAATGCGATTCAGAAAAT
641794 GAGTAAATTC
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
35 31 0.34
37 2 0.02
40 30 0.33
42 29 0.32
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.18
Consensus pattern (37 bp):
TCCAAGAATCGCAATGCGATTCAGAAAATCGCAACCG
Found at i:641745 original size:77 final size:75
Alignment explanation
Indices: 641649--641793 Score: 236
Period size: 77 Copynumber: 1.9 Consensus size: 75
641639 ACGCGATATT
*
641649 CCAAGAATCGCAATACGATTAAGAGAATCGCAACGCGATCTTCCAAGAATCGCAATGCGATTCAA
1 CCAAGAATCGCAATACGATTAAGAAAATCGCAACGCGA--TTCCAAGAATCGCAATGCGATTCAA
641714 AAAATTGCAACG
64 AAAATTGCAACG
* * *
641726 CCAAGAATCGCAATGCGATTCAGAAAATCGCAACGCGATTCCAAGAATCGCAATGCGATTCAGAA
1 CCAAGAATCGCAATACGATTAAGAAAATCGCAACGCGATTCCAAGAATCGCAATGCGATTCAAAA
641791 AAT
66 AAT
641794 GAGTAAATTC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
75 29 0.45
77 35 0.55
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.18
Consensus pattern (75 bp):
CCAAGAATCGCAATACGATTAAGAAAATCGCAACGCGATTCCAAGAATCGCAATGCGATTCAAAA
AATTGCAACG
Found at i:641900 original size:6 final size:6
Alignment explanation
Indices: 641889--641931 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
641879 GACACGTATT
641889 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
641932 GACGAGACGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.35, C:0.49, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:642442 original size:6 final size:6
Alignment explanation
Indices: 642431--642511 Score: 162
Period size: 6 Copynumber: 13.5 Consensus size: 6
642421 TCTCGTCTCG
642431 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
642479 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
642512 AATACGTGTC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 75 1.00
ACGTcount: A:0.00, C:0.16, G:0.51, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:642700 original size:2 final size:2
Alignment explanation
Indices: 642693--642727 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
642683 TTTATTTATC
642693 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
642728 CCACCGGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:647414 original size:39 final size:38
Alignment explanation
Indices: 647309--647445 Score: 145
Period size: 39 Copynumber: 3.6 Consensus size: 38
647299 CCAAGAAAAT
* * **
647309 ATCCAACAATTTATTTCTTTTTTCAAAATAGGAAATTAA
1 ATCCAACGATTTATTTC-TTTTACAAAATAGGAAACCAA
* * *
647348 ATCCAATG-TTTTTTTCCTTTTACAAAATA-TAAACACAA
1 ATCCAACGATTTATTT-CTTTTACAAAATAGGAAAC-CAA
647386 ATCCAACGATTTATTTACTTTTACAAAATAGGAAACCAA
1 ATCCAACGATTTATTT-CTTTTACAAAATAGGAAACCAA
647425 ATCCAAC-ATTTTATTTCTTTT
1 ATCCAACGA-TTTATTTCTTTT
647446 TTTTCCATAA
Statistics
Matches: 82, Mismatches: 11, Indels: 11
0.79 0.11 0.11
Matches are distributed among these distances:
37 3 0.04
38 32 0.39
39 43 0.52
40 4 0.05
ACGTcount: A:0.39, C:0.17, G:0.04, T:0.40
Consensus pattern (38 bp):
ATCCAACGATTTATTTCTTTTACAAAATAGGAAACCAA
Found at i:647624 original size:58 final size:58
Alignment explanation
Indices: 647544--647808 Score: 304
Period size: 58 Copynumber: 4.5 Consensus size: 58
647534 AAGGAAATAA
*
647544 TTTCCTAACAA-AGTTAGAATCATTTAAGATTCTCAAGGAAATAAACTC-ATAAATTTAT
1 TTTCCTTACAATA-TTAGAATCATTTAAGATTCTCAAGGAAATAAACTCAAT-AATTTAT
* * * **
647602 TTTCTTTACAATATTAGAATCATTTAAAATTCTCAAGGAAATAAACTAAACGATTTAT
1 TTTCCTTACAATATTAGAATCATTTAAGATTCTCAAGGAAATAAACTCAATAATTTAT
* *
647660 TTTCCTTACAATGTTAGAATCTCTAACATTTAAGATTCTCAAGGAAATAAACTCAATGATTTA-
1 TTTCCTTACAATATTAGAA----T--CATTTAAGATTCTCAAGGAAATAAACTCAATAATTTAT
* * *
647723 TTTCCTTACAATGTTAGAATCATTTAAGATTCTCAAGGAAATAAATTCAATGATTTAT
1 TTTCCTTACAATATTAGAATCATTTAAGATTCTCAAGGAAATAAACTCAATAATTTAT
**
647781 TTTTTTTACAA-AGTTAGAATCATTTAAG
1 TTTCCTTACAATA-TTAGAATCATTTAAG
647809 GTTCCCTTAC
Statistics
Matches: 182, Mismatches: 15, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
57 36 0.20
58 89 0.49
59 3 0.02
62 1 0.01
63 19 0.10
64 34 0.19
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (58 bp):
TTTCCTTACAATATTAGAATCATTTAAGATTCTCAAGGAAATAAACTCAATAATTTAT
Found at i:647766 original size:121 final size:122
Alignment explanation
Indices: 647564--647801 Score: 363
Period size: 121 Copynumber: 2.0 Consensus size: 122
647554 AAGTTAGAAT
*
647564 CATTTAAGATTCTCAAGGAAATAAACTCATAAATTTATTTTCTTTACAATATTAGAATCATTTAA
1 CATTTAAGATTCTCAAGGAAATAAACTCATAAATTTATTTTCCTTACAATATTAGAATCATTTAA
*
647629 AATTCTCAAGGAAATAAACTAAACGATTTATTTTCCTTACAATGTTAGAATCTCTAA
66 AATTCTCAAGGAAATAAACTAAACGATTTATTTTCCTTACAAAGTTAGAATCTCTAA
* *
647686 CATTTAAGATTCTCAAGGAAATAAACTCA-ATGATTTA-TTTCCTTACAATGTTAGAATCATTTA
1 CATTTAAGATTCTCAAGGAAATAAACTCATA-AATTTATTTTCCTTACAATATTAGAATCATTTA
* * * * **
647749 AGATTCTCAAGGAAATAAATTCAATGATTTATTTTTTTTACAAAGTTAGAATC
65 AAATTCTCAAGGAAATAAACTAAACGATTTATTTTCCTTACAAAGTTAGAATC
647802 ATTTAAGGTT
Statistics
Matches: 105, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
121 71 0.68
122 34 0.32
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (122 bp):
CATTTAAGATTCTCAAGGAAATAAACTCATAAATTTATTTTCCTTACAATATTAGAATCATTTAA
AATTCTCAAGGAAATAAACTAAACGATTTATTTTCCTTACAAAGTTAGAATCTCTAA
Found at i:650285 original size:17 final size:17
Alignment explanation
Indices: 650265--650312 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
650255 GTAAAAACAT
650265 ATTAAATAATAAATATA
1 ATTAAATAATAAATATA
* *
650282 ATT-ATTATATAATTATA
1 ATTAAATA-ATAAATATA
*
650299 ATTAAAAAATAAAT
1 ATTAAATAATAAAT
650313 TTGGGGCTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
16 3 0.12
17 19 0.79
18 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTAAATAATAAATATA
Found at i:653054 original size:3 final size:3
Alignment explanation
Indices: 653046--653089 Score: 52
Period size: 3 Copynumber: 13.7 Consensus size: 3
653036 CTTAAAACTC
*
653046 TCT TCT TCT TATT TCT TCT TCTT TCT TCT TCTT TCT TCT TCT TC
1 TCT TCT TCT T-CT TCT TCT TC-T TCT TCT TC-T TCT TCT TCT TC
653090 CTCTCCTCCC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
3 28 0.78
4 8 0.22
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:653063 original size:10 final size:10
Alignment explanation
Indices: 653048--653088 Score: 73
Period size: 10 Copynumber: 4.1 Consensus size: 10
653038 TAAAACTCTC
*
653048 TTCTTCTTAT
1 TTCTTCTTCT
653058 TTCTTCTTCT
1 TTCTTCTTCT
653068 TTCTTCTTCT
1 TTCTTCTTCT
653078 TTCTTCTTCT
1 TTCTTCTTCT
653088 T
1 T
653089 CCTCTCCTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (10 bp):
TTCTTCTTCT
Found at i:653064 original size:13 final size:12
Alignment explanation
Indices: 653046--653089 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
653036 CTTAAAACTC
653046 TCTTCTTCTTATT
1 TCTTCTTCTT-TT
653059 TCTTCTTC--TT
1 TCTTCTTCTTTT
653069 TCTTCTTCTTTCT
1 TCTTCTTCTTT-T
653082 TCTTCTTC
1 TCTTCTTC
653090 CTCTCCTCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 10 0.36
12 1 0.04
13 17 0.61
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (12 bp):
TCTTCTTCTTTT
Found at i:656269 original size:19 final size:19
Alignment explanation
Indices: 656245--656293 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
656235 ATTACTGTTC
656245 ATAATACTATTCATACAAT
1 ATAATACTATTCATACAAT
* * **
656264 ATAATATTGTTCATACCGT
1 ATAATACTATTCATACAAT
*
656283 ATATTACTATT
1 ATAATACTATT
656294 TATAAAAACG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.43
Consensus pattern (19 bp):
ATAATACTATTCATACAAT
Found at i:657217 original size:19 final size:19
Alignment explanation
Indices: 657188--657236 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
657178 CTGTTCATAG
*
657188 TACTTTTCATACAGTAATA-
1 TACTGTTCATACAGT-ATAC
* *
657207 TATTGTTCATACCGTATAC
1 TACTGTTCATACAGTATAC
657226 TACTGTTCATA
1 TACTGTTCATA
657237 AAAATGTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 3 0.12
19 22 0.88
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (19 bp):
TACTGTTCATACAGTATAC
Found at i:658184 original size:19 final size:19
Alignment explanation
Indices: 658157--658199 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
658147 CTGTTCACAG
*
658157 TACTTTTCATACAGTATAA
1 TACTGTTCATACAGTATAA
* *
658176 TACTGTTCATACATTATAT
1 TACTGTTCATACAGTATAA
658195 TACTG
1 TACTG
658200 CCCATGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (19 bp):
TACTGTTCATACAGTATAA
Found at i:659156 original size:19 final size:19
Alignment explanation
Indices: 659129--659177 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
659119 CTGTTCATAG
659129 TACTGTTCATACAATATAA
1 TACTGTTCATACAATATAA
* * *
659148 TATTGTTCATACCATATAT
1 TACTGTTCATACAATATAA
659167 TACTGTTCATA
1 TACTGTTCATA
659178 TAAACGTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (19 bp):
TACTGTTCATACAATATAA
Found at i:661880 original size:935 final size:953
Alignment explanation
Indices: 655272--663878 Score: 10947
Period size: 972 Copynumber: 9.0 Consensus size: 953
655262 CATAGTACTA
* * * * * * * * **
655272 TTCACGGTACTATTCATAAAGTACAATAATATTCATATCGTATATTACTGTTCATAAAAACATTT
1 TTCACAGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTT
* * *
655337 TTGACTTAATTTTTTATAATGAAACATAATTTAATCGTATATTAATGTATTTTCTTAATATATGT
66 TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGT
* * * * *
655402 CCAAATTATCTGTTATTTTGTAAAACTTAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGT
131 CCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGT
* * * * * * *
655467 A-ACCGGGTCGGATATGGGTTGGGGTGTTACATTTAATGGCATCAGAGCTA-AATTTAGCAGATT
196 ATA-CGGGTCGAATACGAGTTGGGGTGTTACATTTAATGGTATCAAAGCTACGATTTAGCCGATT
*
655530 CTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTG-AAAAAAA
260 CTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAATGAAAAAAAA
* *
655594 TCTGATCTGATAGTGTAAGGAGTGTACTGTCTTGTAAATAGAGTTAAATTGTTATGTTATATTAG
325 T-AGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAG
* * *
655659 AGGTATGATCATGAGAGTTTCCAAAGTGAAGCACAAGGTGATAGACTGAAGGTAACAGCAATTCA
389 AGGTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCA
* * * *
655724 CCTGCCCTGGCCAGGCAGAGAGAAGAGCGAACACCTCAAGGAGAGTCTGTATAAGATTAGAGAAT
454 CCTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAAT
* **
655789 GTTTTCATGAT-GTTGAATGATATTCTCATGTGTTTCCAATTTTATTCTTCTTCAACTCATAGAA
519 GTTTTCATGATAG-TGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAGAA
* * *
655853 TGAATGTTTGAAAATAGTTAAAAGAGTTAGGAGCACCCAAGCTCAAGAGTGAATTTGAGGAAGGT
583 TGAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGT
* * * * * *
655918 TTTGTTGTTCCAGACCTTTGGATAAATGATATTAAGATAATATCAGAAGGTTCTCATTTCTCCAA
648 TTTGTTGTTACAGACCTTTAGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAA
* * *
655983 AGTGGATAAGTTAAATTGAGTAGTTTTGTTACTACGTGGGCAAGCTATAGTATGGTGGACAAATG
713 AGTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATG
* * *
656048 CCACTATAAGAATGTTAAAAGATCAAGTGATGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAG
778 TCACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAG
* *
656113 TACATCGATGATCAGTTTATAAGACAAATGAAGCTAGAATATATGAGCTTGAAGCAAGGGAATTA
843 TACATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTA
* * *
656178 CATATGCATGTGTATGAATGTAAGTTTAATAAGTTAAGCAGATTTGTTGTTGAGTTGATTACTG
908 C--ACGCA--TGTAT--ATAT-AG-TT-AT-AGTT----AGA--TGTT-CTGAGTTGATTA-TG
* * * * * * * * *
656242 TTCATAATACTATTCATACAATATAATATTGTTCATACCGTATATTACTATTTATAAAAACGTTT
1 TTCACAGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTT
* **
656307 TTGACTTAAAGTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTCTTATAAGT
66 TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGT
* * *
656372 CCAAATGATCTGCTATTTTGTAAAAGTAAAGTTTTTGAAATGTCAATGTGACATCTCGAACTCGT
131 CCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGT
* * * * * * * * * ** *
656437 ATCCAGGTCGGATACGGGTTAGGGTGTTATATTTAATGGTATTATAGATACGGCTTAGCTGATTC
196 ATACGGGTCGAATACGAGTTGGGGTGTTACATTTAATGGTATCAAAGCTACGATTTAGCCGATTC
* * * * *
656502 TAGGCTTAAAATGAAGTCAGAAGTGTTTTAAAAAGTATACATGCCAGCACAAAGTGAAGAAAAAT
261 TAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAATGAAAAAAAAT
* * * * *
656567 CTGATTTGATACTGTCAGGAGTGTACTGTCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGA
326 -AGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGA
* * *
656632 GGTATGATCATGAGAGATTCCAAAGTGAAGAACAAGACGATAGACTGAAGGTAATAGCAATTCAC
390 GGTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCAC
*
656697 CTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTATATAAGATTAGAGAATG
455 CTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATG
* * *
656762 TTTTCATGAT-GTTGAATGATATTCTGATGTGTTTCTAATTTTATGATTCTTCAAATCATGGAAT
520 TTTTCATGATAG-TGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAGAAT
656826 GAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTT
584 GAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTT
* * *
656891 TTGTTGTTACAGACCTTTGGCTAAATGATATTAAGATAATGTTAGAAGGTTTTCATTTCTCCAAA
649 TTGTTGTTACAGACCTTTAGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAA
*
656956 GTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGTAAGCTAGAGTATGGTGGACAAATGT
714 GTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGT
* *
657021 CACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTATTTGTAGAAGAGTTCAAGAATAATT
779 CACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGT
* * * * * * *
657086 ACATCGATGACCAATTTATAAGACCAAT-----T-TAA-A-A-GATCATG-AG-TA-TGAATGTA
844 ACATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAAT-TA
* * *
657139 -A-G--TTTA-ATA-AGTTA-AG-CAGATTTATTGCTGAGTTGATTACTG
908 CACGCATGTATATATAGTTATAGTTAGA--TGTT-CTGAGTTGATTA-TG
* * * *
657181 TTCATAGTACTTTTCATACAGTA-ATATATTGTTCATACCGTATACTACTGTTCATAAAAATGTT
1 TTCACAGTACTTTTCATACAGTATA-ATACTGTTCATACCGTATATTATTGTTCATAAAAATGTT
* **
657245 TTTGACTTAAATCTTTATAATGAAACATAATTTAATCAAATATTATTGTATTTTCTTAATATAAG
65 TTTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAG
* *
657310 TCCAAATGATATGATATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATTTCGGACTCG
130 TCCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCG
* * ** * * * * * *
657375 TATCCGGATCGGGTATGGGTTGGAGTGTTATATTTAATGGTATCAGAGCTACGGTTTAGCCGATT
195 TATACGGGTCGAATACGAGTTGGGGTGTTACATTTAATGGTATCAAAGCTACGATTTAGCCGATT
* *
657440 CTAGGCCTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTG-AAAAAAA
260 CTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAATGAAAAAAAA
* * *
657504 T-GATCTGATAGTGTAAGAAGTGTACTGTCTTGTAAATAGAGTTAAATTGTTTTGTTATATTAGA
325 TAGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGA
* * * * * *
657568 AGTATAATCATGAGAGCTTCCAAAGTGAAACACAAGGTGATAGACTGATGGTAAAAGCAATTCAC
390 GGTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCAC
* * * * * *
657633 CTGCCCTGTCTAAGTAGGGAGAAGAGCGAACACCTCAGAGAGTGCATGTATAAGATTAGAGAATG
455 CTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATG
* * * * * * *
657698 TTTTCAAGAT-GTTAAATGACATTCTGATTTGTTCCCAAATTTATGCTTCTTCAACTCATAGAAT
520 TTTTCATGATAG-TGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAGAAT
* *
657762 GAATGTATGAAAATAGTTAAAAGAGTTAGGATCACCCGAGCTCAAGAGTGAATTTGGGGATGGTT
584 GAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTT
* * *
657827 TTGTTGTTACAGACCTTTGGATAAATGATAT-ATAGATAATGTTAGAATGTTTTCATTTCACCAA
649 TTGTTGTTACAGACCTTTAGATAAATGATATGA-AGATAATGTTAGAAGGTTTTCATTTCTCCAA
* *
657891 AGTGGAGAAGCTGAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATG
713 AGTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATG
*
657956 TCACCATAAGAATGTTAAAAGCTCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAG
778 TCACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAG
* *
658021 TACATCGATGACCAATTTATAAGACAAATGAAGCTAGAATATACGAGCCTGAAGCAAGGGAATTA
843 TACATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTA
* * *
658086 CACGTGCATATGTATGAATGTAAGTTTAATAAGTTAAGCAGATTTGTTCCCGAGTTAATTACTG
908 CAC--GC--ATGTAT--ATAT-AG-TT-AT-AGTT----AGA--TGTT-CTGAGTTGATTA-TG
** * ** * **
658150 TTCACAGTACTTTTCATACAGTATAATACTGTTCATACATTATATTACTGCCCATGAAAACATTT
1 TTCACAGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTT
*
658215 TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATATGT
66 TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGT
* * * *
658280 CCAAATGATCTGCTATTTTATAAAAGTAAAGGTTTTGAAATGTCAATGTGACACCTCAGACTCGT
131 CCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGT
* * * *
658345 ATATGGGTCGGAA-ACGGGTTGGGGTGTTACATTTAATGGTATCAGAGCT-CTAATTTAGCCGAT
196 ATACGGGTC-GAATACGAGTTGGGGTGTTACATTTAATGGTATCAAAGCTAC-GATTTAGCCGAT
* * *
658408 TCTAGGCTTAAAACGAAGTCTAAAGTGTTATAAAAAGTATACATGCCAACACAAAGTGAAAAAAA
259 TCTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAATGAAAAAAA
* *
658473 ATCTGATCTGATAGTGTAAGGAGTGTGA-TGTCTTGTAAATAGAGTTAAATTGTTATGTTATATT
324 AT-AGATCTGATAGTGTAAGGAGTGT-ACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATT
* * * * *
658537 AGAGGTATGATCATGAGAGATTCTAAAGTGAAGAACAAGACGATAGACTGAAGGTAATAGTAATT
387 AGAGGTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATT
* * * * *
658602 CACCTACTCTGGCTAGGCAGGGAGAAGAGCGAACACCTCAAGGAATGCCTGTATAAGATTAGAGA
452 CACCTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGA
* * *
658667 TTTTTTTCATGAT-GTTGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAAATCATAG
517 ATGTTTTCATGATAG-TGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAG
*
658731 AATTAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAG
581 AATGAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAG
* * * *
658796 GTTTTGTTGTTATAGACCTTTGGCTAAATGATATTAAGATAATGTTAGAAGGTTTTCATTTCTCC
646 GTTTTGTTGTTACAGACCTTTAGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCC
* * *
658861 AAAGTGGAGAAGTTAAATTCAGTAGTTTCGTTACTATGTGGGCAAGCTAGAGTATAGTGGACAAA
711 AAAGTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAA
* *
658926 TGTCATCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTATTTGTAGAAGAGTTCAAGAATA
776 TGTCACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATA
* *
658991 ATTACATCGATGACCAGTTTATAAGACAAATGAAGATAGAATATACGAGCTTGAAGCAAGGGAAT
841 AGTACATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAAT
* * *
659056 TACACGTGCATGTGTATGAATGTAAGTTTAATAAGTTAAGCAGATTTGTTGTTAAGTTGATTACT
906 TACAC--GCA--TGTAT--ATAT-AG-TT-AT-AGTT----AGA--TGTT-CTGAGTTGATTA-T
659121 G
953 G
* * * * * * * *
659122 TTCATAGTACTGTTCATACAATATAATATTGTTCATACCATATATTACTGTTCATATAAACGTTT
1 TTCACAGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTT
*
659187 TTGACTTAAAGTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGT
66 TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGT
*
659252 CCAAATGATCTGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGT
131 CCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGT
* * * * * * *
659317 ATTCAGGTCGGATACGGGTTAGGGTGTTACATTTAATGGTATTAGAGCTACG-TCTTAGCCGATT
196 ATACGGGTCGAATACGAGTTGGGGTGTTACATTTAATGGTATCAAAGCTACGAT-TTAGCCGATT
*
659381 CTAGGC--CAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACA-AAAACTGAAGAAAA
260 CTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAA-TGAA-AAAA
* * * * *
659443 ATTTGATCTGATAGTGTCAA-GAGTGTACTGTCTTGTAAATAAAGTTAAATTGCTATGTTATATT
323 AATAGATCTGATAGTGT-AAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATT
* * * * *
659507 AGAGGTATGATAATGAGAGCTTCAAAAGTGAAGCACAAGGTGATAGACTGAAGGTAAAAGCTATT
387 AGAGGTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATT
* * * * * ** *
659572 AACCTGCCCTGTCTAGGCAGGGAGAAGAGCGAACACCTCAAGAAGTGATTGTAAAAGATTAGAGA
452 CACCTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGA
* * * * * * * *
659637 ATGTTTTCAAGAT-GTTAAATGATATTATGATTTGTTCCCAAATTTAGGCTTCTTCAACTCAT-G
517 ATGTTTTCATGATAG-TGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAG
* *
659700 ATATGAATGTATGAAAATAGTTAAAAGAGTTAGGATCACCCGAGCTCAAGAGTGAATTTGGGGAT
581 A-ATGAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAA
* *
659765 GGTTTTGTTGTTACAGACCTTTGGATAAATGATAT-ATAGATAATGTTAGAATGTTTTCATTTCT
645 GGTTTTGTTGTTACAGACCTTTAGATAAATGATATGA-AGATAATGTTAGAAGGTTTTCATTTCT
* *
659829 CCAAAGTGGAGAAGCTAAATTGAGTAGTTTCATTACTACGTGGGCAAGCTAGAGTATGGTGGACA
709 CCAAAGTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACA
* * * * * *
659894 AATGTCAACATAAGAATGTTAATAGCTCAAGTGACGTGTTTATTGTTTATTGAAGAGTTCAAGAA
774 AATGTCACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAA
* * *
659959 TAAGTACATCGATGACCAATTTATAAGACAAATGAAGCTAGAATATACGAGCCTGAAGTAAGGGA
839 TAAGTACATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGA
* * * *
660024 ATTACACATGGATGTGTACGAATGTAAGTTTAATAAGTTAAGCAGATTTTGTTGGTGAGTTGATT
904 ATTACAC--GCA--TGTA--TATAT-AG-TT-AT-AGTT----AGA---TGTT-CTGAGTTGATT
660089 ACTG
951 A-TG
* * * * * *
660093 TTCACAGTACTATTT-ATACTGTATTATATTGTTCGTACCGTATATTACTGTTCAAAAAAATGTT
1 TTCACAGTACT-TTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTT
* *
660157 TCTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATGATTGTATTTTCTTAATATAAG
65 TTTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAG
*
660222 TCCAAATGATCTGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCG
130 TCCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCG
* * * * * *
660287 TAT-CTGGGTCGGATACGAGTTAGGGTGTTAAATTTAATGGTATCAGAGATAC-AGTTTAGCCGC
195 TATAC-GGGTCGAATACGAGTTGGGGTGTTACATTTAATGGTATCAAAGCTACGA-TTTAGCCGA
* *
660350 TTCTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAATACAAAGTGAAAACA
258 TTCTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAATGAAAA-A
* *
660415 AAATCTGATCTAATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATAT
322 AAAT-AGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATAT
* * * * * * * * *
660480 TAGAGGTATGATCATGATAGCTTCGAAAGTCAAGTATAAGGTGATAAACGGAAGTTAATAGCAAT
386 TAGAGGTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAAT
* * * * *
660545 TCACCTGCTCTGGCCAGGCAGGGAGAAGAGCGAACACCTTAGGGAAT-CTTGTATAAGATTAGAT
451 TCACCTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAG
* * * * *
660609 AATGCTTTCATGATATTGAATGATATTCTAATGTGTTTCCAATTTTATGCTTCTTCAACTCATAT
516 AATGTTTTCATGATAGTGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAG
* *
660674 AATGAATGTATGAAAATAGTTAAAAGAGTTAGAAGCACCCGAGCTAAAGAGTGAATTTGGGGAAG
581 AATGAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAG
* * * * *
660739 GTTTTATTGTTACAGACCTTTGGATAAATGATATAAAGATAATGTTATAATGTTTTCATTTCTCC
646 GTTTTGTTGTTACAGACCTTTAGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCC
* * *
660804 AAAGTTGAGAAGTAAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTAAGGTGGACAAA
711 AAAGTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAA
* * *
660869 TGTCACCATAAGAATGTTAAAAGATCAAGTGACATGGTTATTGTTTATAGAAGAATTCAAGAATA
776 TGTCACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATA
*
660934 AGTACATCGATGACCAG-TTACAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAAT
841 AGTACATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAAT
660998 TA-A-GCA-G-AT-T-T-G-T-T-GTT-GA-G-T-TGA-TT-A-T-TG
906 TACACGCATGTATATATAGTTATAGTTAGATGTTCTGAGTTGATTATG
* * * *
661028 TTCACAGTACTTTTCATACAATATAATACTATTCATACCGTATAGTATTATTCATAAAAATGTTT
1 TTCACAGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTT
**
661093 TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTAT-TTAATATGTG
66 TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTT-TCTTAATATAAG
* * * *
661157 TCCAAATGATATGCAATTTTGTAAAAGTAAAGGTTTTGAAATGTTAATGTGACACCTCAGACTCG
130 TCCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCG
* * * * * * **
661222 TATACGGGTCAAAAACGGGTTGCGGTGTTACATTTAATGGTATTAAATCTACGATTTAGTTGATT
195 TATACGGGTCGAATACGAGTTGGGGTGTTACATTTAATGGTATCAAAGCTACGATTTAGCCGATT
* * * *
661287 CTAGGTTTAAAACGAAGTCTACAGTGTTTTAAAAAGTATACATGCCAACACAAAACGAAAAAAAA
260 CTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAATGAAAAAAAA
** *
661352 TCAGATCTGATAGTGTAAGGAGTGTGTTGTCTTGTAAATAGAGTTAAATTGTTATGTTATATTAG
325 T-AGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAG
* * *
661417 AGTTATGATCAATG-GAGCTTCCAAAGTGAAGCATAAGGCGATAGACTGAAGGTAATAGAAATTC
389 AGGTATGATC-ATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTC
* * * *
661481 ACCTGCCATGGCCAGGAAGGGAGAAGAGCGAACACCTCAGGGAGTGCATGTATTAGATTAGAGAA
453 ACCTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAA
* * *
661546 TGTTTTCATGATAGTGAATGATATTCTGACGTGTTTCCTATTTTATGATTCTTTAACTCATAGAA
518 TGTTTTCATGATAGTGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAGAA
* *
661611 TGAATGTATGGAAATAGTTAAAAGAGTTTGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGT
583 TGAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGT
*
661676 TTGGTTGTTACAGACCTTTAGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAA
648 TTTGTTGTTACAGACCTTTAGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAA
* *
661741 AGTGGATAAGTTAAATTGAGTAGTTTCTTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATG
713 AGTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATG
*
661806 TCACCATAAGAATGTTAAAAGATCAAGTGATGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAG
778 TCACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAG
* *
661871 TACATCGATGACCGGTTTATAAGACAAATTAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTA
843 TACATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTA
* *
661936 CACGTGCATGTGTATGAATGTAAGTTTCATAAGTTAAACAGATTTGTTGCTGAGTTGATTACTT
908 CAC--GCA--TGTAT--ATAT-AG-TT-AT-AGTT----AGA--TGTT-CTGAGTTGATTA-TG
* * * ** *
662000 TTCACAGTATTTTTCATACAGTATAATTCTGTTTATATAGTATATTATTGTTCATAAAAACGTTT
1 TTCACAGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTT
* * *
662065 TTGACTTAAAGTTTTATAATAAAACATAATTTAATCGTATATTATTGTAATTTCTTAATATAAGT
66 TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGT
* * * * *
662130 CCAAATGATATGCTATTTAGTAAAAGTAAAGGCTTTGAAATGTCAATGTCACATCTTGGACTCTT
131 CCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGT
* * *
662195 ATAAGGGTCGAATATGAGTTGGGGTGTTACATTTAATGGTATCAGAA-CTACGATTTATCCGATT
196 ATACGGGTCGAATACGAGTTGGGGTGTTACATTTAATGGTATCA-AAGCTACGATTTAGCCGATT
*** * *
662259 CTAAATTTAAAACGAAGTCAAATGTGTTTTACAAAGTATACATGCCAACA-AAAAGTGAAAAAAA
260 CTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAA-TG-AAAAAA
* *
662323 AATTGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTAAGTTATATTA
323 AATAGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTA
* * *
662388 GAGGTATGATCATGAGAGATTCCAAAGTGAAGAACAAGACGATAGACTGAAGGTAATAGCAATTC
388 GAGGTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTC
* * *
662453 ACCTGCCCTGGCCAGGCAGGGAGAAGAACGAACACCTCAGGGTGTGCCTATATAAGATTAGAGAA
453 ACCTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAA
* * * *
662518 TGTTTTCATGATATTGAATGATATTCTGATGTGTTTCCAATTGTATGCTTCTTCAACTCATACAA
518 TGTTTTCATGATAGTGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAGAA
* ** *
662583 TGAATGTATGAAAATAGTTAAAAGAGTTTGGAGCACCCGAGAACAAGAGTGAATTTGGGGAAGAT
583 TGAATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGT
* *
662648 TTTGTTGTTACAGACCTTTGGAAAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAA
648 TTTGTTGTTACAGACCTTTAGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAA
* * *
662713 ATTGGATAAGTTAAATTGAGTAGTTTTGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATG
713 AGTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATG
* * * *
662778 TCACTATAAAAATGTAAAAAGATCAAGTGACGTAGTTATTGTTTGTAGAAGAGTT-AAGAATAAG
778 TCACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAG
* * *
662842 TATATTGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGATGCAAGGGAATTA
843 TACATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTA
*
662907 CACGTGCATGTGTATGAATATAAGTTTAATAAGTTAAAAAGATTTGTTGCTGAGTTGATTACTA
908 CAC--GCA--TGTAT--ATAT-AG-TT-AT-AGTT----AGA--TGTT-CTGAGTTGATTA-TG
* * *
662971 TTCACAGTACTATTCATACAGTATAATACTTTTCATTCCGTATATTATTGTTCATAAAAATGTTT
1 TTCACAGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTT
* **
663036 TTGACTTAAATATTTATAATGAAACATAATTTAATCAAATATTATTGTATTTTCTTAATATAAGT
66 TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGT
* * *
663101 CCAAATGATATGCTATTTTGTAAAAGTAAAAG-TTTGAAAAGTCAATGTGACATTTCGGACTCGT
131 CCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGT
* * * * * * * * *
663165 ATCCGGATCGGATATGGGTTGGGGTGTTATATTTAATGGTATCAGAGCTACGGTTTAGCCGTTTC
196 ATACGGGTCGAATACGAGTTGGGGTGTTACATTTAATGGTATCAAAGCTACGATTTAGCCGATTC
* * * * * *
663230 TAGGCCTGAAACGAAGTCAAAATTGTTTTAAAAAGTATACATGCCAACATAAAGTGAAAAAATAT
261 TAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAATGAAAAAAAAT
* * * *
663295 A-ATCTGATAATGTAAGGAGTGTACTGTCTTGTAAATAGAGTTAAATTGTTTTGTTATATTAGAA
326 AGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAG
* * *
663359 GTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGTGATAGACTGATGGTAAAAGCAATTCACC
391 GTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACC
* ** *
663424 TGCCCTGTCTTGGCAGGGAGAAGAGCAAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGT
456 TGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGT
* * * * * * *
663489 CTTCATGAT-GTTAAATGACATTCTGATTTGTTCCCAAATTTATGATTCTTCTACTCATAGAATG
521 TTTCATGATAG-TGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAGAATG
* * *
663553 AATATATGAAAATAGTTAAAAGAGTTAGGATCA-CCGAGCTCAAGAGTGAATTTGGGGATGGTTT
585 AATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTT
* * *
663617 TGTTGTTACAGACCTTTAGATAAATGATAT-ATAGATAATATTAGAATGTTTTCATTTCACCAAA
650 TGTTGTTACAGACCTTTAGATAAATGATATGA-AGATAATGTTAGAAGGTTTTCATTTCTCCAAA
* * *
663681 GTGGAGAAGCTAAATTGAGTAATTTCGTTACTGCGTGGGCAAGCTAGAGTATGGTGGACAAATGT
714 GTGGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGT
*
663746 CACCATAAGAATGTTAAAAGCTCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGT
779 CACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGT
* * * *
663811 ACATCGATGACCAATTTATAAGACAAATGAAGCTAGAATATACAAGCCTAAAGCAAGGGAATTAC
844 ACATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTAC
663876 ACG
909 ACG
663879 TGCATGTGTA
Statistics
Matches: 6785, Mismatches: 724, Indels: 260
0.87 0.09 0.03
Matches are distributed among these distances:
934 157 0.02
935 605 0.09
936 550 0.08
937 2 0.00
938 9 0.00
939 306 0.05
940 6 0.00
941 1 0.00
942 3 0.00
943 3 0.00
944 5 0.00
945 5 0.00
946 3 0.00
947 8 0.00
948 8 0.00
950 3 0.00
951 1 0.00
952 4 0.00
953 3 0.00
954 2 0.00
955 3 0.00
956 4 0.00
957 1 0.00
958 4 0.00
960 7 0.00
961 8 0.00
962 3 0.00
963 5 0.00
964 5 0.00
965 3 0.00
966 4 0.00
967 196 0.03
968 332 0.05
969 315 0.05
970 945 0.14
971 618 0.09
972 2112 0.31
973 385 0.06
974 151 0.02
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (953 bp):
TTCACAGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTT
TTGACTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGT
CCAAATGATATGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGT
ATACGGGTCGAATACGAGTTGGGGTGTTACATTTAATGGTATCAAAGCTACGATTTAGCCGATTC
TAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAATGAAAAAAAAT
AGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAG
GTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACC
TGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGT
TTTCATGATAGTGAATGATATTCTGATGTGTTTCCAATTTTATGATTCTTCAACTCATAGAATGA
ATGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTT
GTTGTTACAGACCTTTAGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGT
GGAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCA
CCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTAC
ATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACAC
GCATGTATATATAGTTATAGTTAGATGTTCTGAGTTGATTATG
Found at i:664622 original size:773 final size:769
Alignment explanation
Indices: 663133--664670 Score: 2348
Period size: 773 Copynumber: 2.0 Consensus size: 769
663123 AAAGTAAAAG
* ** * * * * * *
663133 TTTGAAAAGTCAATGTGACATTTCGGACTCGTATCCGGATCGGATATGGGTTGGGGTGTTATATT
1 TTTGAAAACTCAATGTGACACCTAGGACTCGTATACGGATCGAAAACGGGTTGGGGTGTTACATT
** * * * *
663198 TAATGGTATCAGAGCTACGGTTTAGCCGTTTCTAGGCCTGAAACGAAGTCAAAATTGTTTTAAAA
66 TAATGGTATCAGAGCTACAATTTAGCCGATTCTAGGCCTAAAACGAAGTCAAAAGTGTTATAAAA
*
663263 AGTATACATGCCAACATAAAGTGAAAAAATATAATCTGATAATGTAAGGAGTGTACTGTCTTGTA
131 AGTATACATGCCAACACAAAGTGAAAAAATATAATCTGATAATGTAAGGAGTGTACTGTCTTGTA
* * *
663328 AATAGAGTTAAATTGTTTTGTTATATTAGAAGTATGATCATGAGAGCTTCCAAAGTGAAGCACAA
196 AATAGAGTTAAATTGTTATGTTATATTAGAAGTATGATCATGAGAGATTCCAAAGTGAAGAACAA
* * * * * ** *
663393 GGTGATAGACTGATGGTAAAAGCAATTCACCTGCCCTGTCTTGGCAGGGAGAAGAGCAAACACCT
261 GATGATAGACTGAAGGTAAAAGAAATTCACCTACCCTGGCCAGGCAAGGAGAAGAGCAAACACCT
* *
663458 CAGGGAGTGCCTGTATAAGATTAGAGAATGTCTTCATGATGTTAAATGACATTCTGATTTGTTCC
326 CAGGGAGTGCCTGTATAAGATTAGAGAATGTCTTCATGATGTAAAATGACATTCTGATGTGTTCC
* * *
663523 CAAATTTATGATTCTTCTACTCATAGAATGAATATATGAAAATAGTTAAAAGAGTTAGGATCACC
391 CAAATTTATGATTCTTCAAATCATAGAATGAATATATGAAAATAGTTAAAAGAGTTAGGAGCACC
663588 GAGCTCAAGAGTGAATTTGGGGATGGTTTTGTTGTTACAGACCTTTAGATAAATGATATATAGAT
456 GAGCTCAAGAGTGAATTTGGGGATGGTTTTGTTGTTACAGACCTTTAGATAAATGATATATAGAT
*
663653 AATATTAGAATGTTTTCATTTCACCAAAGTGGAGAAGCTAAATTGAGTAATTTCGTTACTGCGTG
521 AATATTAGAAGGTTTTCATTTCACCAAAGTGGAGAAGCTAAATTGAGTAATTTCGTTACTGCGTG
* *
663718 GGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAAAGCTCAAGTGACGTGGTTA
586 GGCAAGCTAGAGTATAGTGGACAAATGTCACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTA
*
663783 TTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAATTTATAAGACAAATGAAGCTAGA
651 TTATTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAATTTATAAGACAAATGAAGCTAGA
*
663848 ATATACAAGCCTAAAGCAAGGGAATTACACGTGCATGTGTATGAATGTAAAGGT
716 ATATACAAGCCTAAAGCAAGGGAATTACACGTGCATGTGAATGAATGTAAAGGT
* *
663902 TTTGAAATCTCAATGTGACACCTAGGACTCGTATACGGGTCGAAAACGGGTTGGGGTGTTACATT
1 TTTGAAAACTCAATGTGACACCTAGGACTCGTATACGGATCGAAAACGGGTTGGGGTGTTACATT
* * * *
663967 TAATTGTATCAGAGCTACAATTTAGTCGATTCTAGGCTTAAAACGAAGTCTAAAGTGTTATAAAA
66 TAATGGTATCAGAGCTACAATTTAGCCGATTCTAGGCCTAAAACGAAGTCAAAAGTGTTATAAAA
*
664032 AGTATACATGCCAACACAAATTGAAAAAA-A-AATCTGATTTGATAGTGTAAGGAGTGTGA-TGT
131 AGTATACATGCCAACACAAAGTGAAAAAATATAATCTGA--T-A-A-TGTAAGGAGTGT-ACTGT
*
664094 CTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGATTCCAAAGTGAA
190 CTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAAGTATGATCATGAGAGATTCCAAAGTGAA
* *
664159 GAACAAGATGATAGACTGAAGGTAATAGAAATTCACCTACCCTGGCCAGGCAAGGAGAAGAGCGA
255 GAACAAGATGATAGACTGAAGGTAAAAGAAATTCACCTACCCTGGCCAGGCAAGGAGAAGAGCAA
* *
664224 ACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATGTAAAATGATATTCTGATG
320 ACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTCTTCATGATGTAAAATGACATTCTGATG
* * * *
664289 TGTTTCCAATTTTATGATTCTTCAAATCATAGAATTAATGTATGAAAATAGTTAAAAGAGTTAGG
385 TGTTCCCAAATTTATGATTCTTCAAATCATAGAATGAATATATGAAAATAGTTAAAAGAGTTAGG
* *
664354 AGCACCCGAGCTCAAGAGTGAATTTGGGGAAT-GTTTTGTTGTTACAGACCTTTGGCTAAATGAT
450 AGCA-CCGAGCTCAAGAGTGAATTTGGGG-ATGGTTTTGTTGTTACAGACCTTTAGATAAATGAT
* * * * *
664418 AT-TAAGATAATGTTAGAAGGTTTTTATTTCTCCAAAGTGGAGAAGTTAAATTGAGTAGTTTCGT
513 ATAT-AGATAATATTAGAAGGTTTTCATTTCACCAAAGTGGAGAAGCTAAATTGAGTAATTTCGT
* *
664482 TACTGCGTGGGCAAGCTAGAGTATAGTGGACAAATGTCATCATAATAATGTTAAAAGATCAAGTG
577 TACTGCGTGGGCAAGCTAGAGTATAGTGGACAAATGTCACCATAAGAATGTTAAAAGATCAAGTG
* * *
664547 ACGTGGTTATTATTTGTAGAAGAGTTCAAGAATAATTACGTCGATGACCAGTTTATAAGACAAAT
642 ACGTGGTTATTATTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAATTTATAAGACAAAT
* * *
664612 GAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGAATGAATGTAA
707 GAAGCTAGAATATACAAGCCTAAAGCAAGGGAATTACACGTGCATGTGAATGAATGTAA
664671 GTTTAATAAC
Statistics
Matches: 692, Mismatches: 68, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
767 7 0.01
768 1 0.00
769 137 0.20
770 1 0.00
771 1 0.00
772 255 0.37
773 288 0.42
774 2 0.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (769 bp):
TTTGAAAACTCAATGTGACACCTAGGACTCGTATACGGATCGAAAACGGGTTGGGGTGTTACATT
TAATGGTATCAGAGCTACAATTTAGCCGATTCTAGGCCTAAAACGAAGTCAAAAGTGTTATAAAA
AGTATACATGCCAACACAAAGTGAAAAAATATAATCTGATAATGTAAGGAGTGTACTGTCTTGTA
AATAGAGTTAAATTGTTATGTTATATTAGAAGTATGATCATGAGAGATTCCAAAGTGAAGAACAA
GATGATAGACTGAAGGTAAAAGAAATTCACCTACCCTGGCCAGGCAAGGAGAAGAGCAAACACCT
CAGGGAGTGCCTGTATAAGATTAGAGAATGTCTTCATGATGTAAAATGACATTCTGATGTGTTCC
CAAATTTATGATTCTTCAAATCATAGAATGAATATATGAAAATAGTTAAAAGAGTTAGGAGCACC
GAGCTCAAGAGTGAATTTGGGGATGGTTTTGTTGTTACAGACCTTTAGATAAATGATATATAGAT
AATATTAGAAGGTTTTCATTTCACCAAAGTGGAGAAGCTAAATTGAGTAATTTCGTTACTGCGTG
GGCAAGCTAGAGTATAGTGGACAAATGTCACCATAAGAATGTTAAAAGATCAAGTGACGTGGTTA
TTATTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAATTTATAAGACAAATGAAGCTAGA
ATATACAAGCCTAAAGCAAGGGAATTACACGTGCATGTGAATGAATGTAAAGGT
Found at i:664746 original size:19 final size:19
Alignment explanation
Indices: 664719--664767 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
664709 CTGTTCATAG
664719 TACTGTTCATACAATATAA
1 TACTGTTCATACAATATAA
* * *
664738 TAGTGTTCATACCATATAT
1 TACTGTTCATACAATATAA
664757 TACTGTTCATA
1 TACTGTTCATA
664768 AAAACGTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (19 bp):
TACTGTTCATACAATATAA
Found at i:665714 original size:19 final size:19
Alignment explanation
Indices: 665690--665736 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
665680 CTGTTCACAG
* *
665690 TACTGTTTATACTATATAA
1 TACTGTTCATACCATATAA
* *
665709 TACTGTTCGTACCATATAT
1 TACTGTTCATACCATATAA
665728 TACTGTTCA
1 TACTGTTCA
665737 AAAAAACGGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.45
Consensus pattern (19 bp):
TACTGTTCATACCATATAA
Found at i:666366 original size:13 final size:13
Alignment explanation
Indices: 666348--666372 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
666338 GTTACAGAGC
666348 AGTAAAATTGAGA
1 AGTAAAATTGAGA
666361 AGTAAAATTGAG
1 AGTAAAATTGAG
666373 TAGTTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (13 bp):
AGTAAAATTGAGA
Found at i:666534 original size:21 final size:21
Alignment explanation
Indices: 666510--666552 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
666500 ATAAGACAAA
666510 TGAAGCTAGAATATACGAGCT
1 TGAAGCTAGAATATACGAGCT
666531 TGAAGCTAGAATATACGAGCT
1 TGAAGCTAGAATATACGAGCT
666552 T
1 T
666553 ATGTATGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (21 bp):
TGAAGCTAGAATATACGAGCT
Found at i:668585 original size:19 final size:19
Alignment explanation
Indices: 668558--668606 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
668548 CTATTCGTAG
*
668558 TACTATTCATACAGTATAA
1 TACTGTTCATACAGTATAA
* * *
668577 TACTGTTCATTCCGTATAT
1 TACTGTTCATACAGTATAA
668596 TACTGTTCATA
1 TACTGTTCATA
668607 AAAACATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (19 bp):
TACTGTTCATACAGTATAA
Found at i:668731 original size:970 final size:972
Alignment explanation
Indices: 666357--670044 Score: 5296
Period size: 970 Copynumber: 3.8 Consensus size: 972
666347 CAGTAAAATT
* * *
666357 GAGAAGTAAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTAAGGTGGACAAATTTCAC
1 GAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCAC
* * * *
666422 CATAAGAATGTTAAAAGATCAAATGACATGGTTATTATTTATAGAAGAGTTCAAGAATAAGTACA
66 CATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACA
* *
666487 TCGATGACCAG-TTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCTA--GAA-TATACG
131 TCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACG
* * * * * *
666548 AGCTTATGTATGAATGTAAGTTTAATAAATTAAGCAGATTTGTTGTTGAGTTGATTATTATTCAC
196 TGCATGTGTATGAATGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTATTCAC
* * * * *
666613 AGTACTTTTCATACAGTATAAAACTATTCATACCATATAGTATTGTTCATAAAAATGTTTTTGAC
261 AGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAACGTTTTTGAC
* * **
666678 TTAAATTTTTATAATGAAACTTAATTTAATCGTATATTATTGTATTTTTTTAATATGTGTCCAAA
326 TTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAA
* * ** * ** *
666743 AGATATGAAATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACACCTTAGACTCGTATACG
391 TGATCTGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGTATCCG
* * * * * * **
666808 GGTCGGAAACGGGTTGAGGTGGTACATTTAATGGTATTAAATCTACGATTTAGATGATTCTAGGC
456 GGTCGGATACGGGTTGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGC
* * *
666873 TGAAAACGAAGTCTAAAGTGTTTTAAAAAGTATACATGCCAACACAAAA-TGAAAAAAAAATCAG
521 TTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACA-AAAAGTG-AAAAAAAATCTG
* ** *
666937 ATCTGATGGTGTAAGGAGTGGGTTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGTT
584 ATCTGATAGTGTAAGGAGTGTATTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGT
* *
667002 ATGATCAATG-GAGCTTCCAAAGTGAAGCATAAGGCGATAGACTGAAGGTAATAGAAATTCACCT
649 ATGATC-ATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCT
* * * *
667066 GCCCTGGCCAAGAAGGGAGAAGAGCGAACACCTCAGGGAGTGCATGTATTAGATTAGAGAATGTT
713 GCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTT
* * * * *
667131 TTCAAGATAGTGAATGATATTCTGACGTGTTTCCTATTTTATGATTCTTTAACTCATAGAATGAA
778 TTCATGATATTGAATGATATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAA
* * *
667196 TGAATGGAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTGG
843 TGTATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTG
*
667261 TTGTTACAGACCTTTAGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTG
908 TTGTTACAGACCTTTGGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTG
* *
667326 GATAAGTTAAATTGAGTAGTTTCTTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCAC
1 GAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCAC
*
667391 CATAAGAATGTTAAAAGATCAAGTGATGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACA
66 CATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACA
* *
667456 TCGATGACCGGTTTATAAGACAAATTAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACG
131 TCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACG
* * *
667521 TGCATGTGTATGAATGTAAGTTTAATAAGTTAAACAGATTTGTTGCTGAGTTGATTATTGTTCAC
196 TGCATGTGTATGAATGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTATTCAC
* * * * **
667586 AGTAATTTTCATACTGTATAATTCTGTTTATATGGTATATTATTGTTCATAAAAACGTTTTTGAC
261 AGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAACGTTTTTGAC
* * *
667651 TTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTAATTTCTCAATACAAGTCCAAA
326 TTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAA
* * * * **
667716 TGATATGCTATTTAGTAAAAGTAAAGGCTTTGAAATGTCAATGTGACATCTTGGACTCGTATAAG
391 TGATCTGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGTATCCG
* * * * * * *
667781 GGTCGAATATGAGTTGGGGTGTTACATTTAATGGTATTAGAACTACGATTTATCCGATTCTAGGT
456 GGTCGGATACGGGTTGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGC
* *
667846 TTAAAACGAAGTCAAATGTGTTTTACAAAGTATACATGCCAACAAAAAGTGAAAAAAAAT-TGAT
521 TTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACAAAAAGTGAAAAAAAATCTGAT
* *
667910 CTGATAGTGTAATGAGTGTATTATCTTGTAAATAGAGTTAAATTGTTAAGTTATATTAGAGGTAT
586 CTGATAGTGTAAGGAGTGTATTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTAT
* * *
667975 GATCATGAGAGATTCCAAAGTGAAGAACAAGACGATAGACTGAAGGTAATAGCAATTCACCTGCC
651 GATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCC
* *
668040 CTGGCCAGGCAGGGAGAAGAACGAACACCTCAGGGTGTGCCTGTATAAGATTAGAGAATGTTTTC
716 CTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTC
* * * *
668105 ACGATATTGAATGATATTCTGATGTGTTTCCAATTGTATGCTTCTTCAACTCATATAATGAATGT
781 ATGATATTGAATGATATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGT
* * * *
668170 GTGAAAATAGTTAAAAGAGTTTGGAGCACCCGAGCAT-AAGAGTGAATTGGGGGAAGATTTTGTT
846 ATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGC-TCAAGAGTGAATTTGGGGAAGGTTTTGTT
* * *
668234 GTTACAAACCTTTGGAAAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAATTG
910 GTTACAGACCTTTGGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTG
*
668297 GAGAAGTTAAATTGAGTAGTTT-ATTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCAC
1 GAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCAC
* * * **
668361 CATAAAAATGTTAAAAGATCAAGTGACGTAGTTATTGTTTGTAGAAGAGTTCAAGAGTAAGTATT
66 CATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACA
* * *
668426 TTGATGACCAGTTTATAAGATAAATGAAGCTAGAATATACGAGCTTGATGCAAGGGAATTACACG
131 TCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACG
* * * **
668491 TGCATGTGTATGAATGTAAGTTGAATAAGTTAAGAAGAGTTGTTGCTGAGTTGATTACTATTCGT
196 TGCATGTGTATGAATGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTATTCAC
* * * *
668556 AGTACTATTCATACAGTATAATACTGTTCATTCCGTATATTACTGTTCATAAAAACATTTTTGAC
261 AGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAACGTTTTTGAC
* * * * *
668621 TTAAATTTTTCTAATGAAACATATTTTAATTGTATATTATTTTATTTTTTTAATATAAGTCCAAA
326 TTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAA
* * * *
668686 TGATCTTCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGTAATCGTATACG
391 TGATCTGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGTATCCG
* * * * * *
668751 GGTCAGATACGGGTTGGAGTCTTATATTTAATGGTATCAGAGCTACGGTTTAACCGATTCTAGGC
456 GGTCGGATACGGGTTGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGC
* *
668816 TTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGGCAACACAAAGTG-AAAAAAATCTGAT
521 TTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACAAAAAGTGAAAAAAAATCTGAT
* * * * *
668880 CTGATAGTGTAAGGAGTGTGTTGTCTTGTATATAGAGTTAAATTGTTATGTTATATTGGAGTTAT
586 CTGATAGTGTAAGGAGTGTATTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTAT
* *
668945 GATCACGAGAGCTTCCAAAGTGAAGCACAAGACGATAGACTGAAGGTAATAGCAATTCACCTGCC
651 GATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCC
* * * **
669010 CTGGCCAGGCAGGGAGAAGAACGAACACCTTAGAGAGAACCTGTATAAGATTAGAGAATGTTTTC
716 CTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTC
* ** *
669075 ATGATGTTGAATGATATTCTGGTGTGTTTCCAATTTTATGCTTCATT-AACTCATAGAATAAATG
781 ATGATATTGAATGATATTCTGACGTGTTTCCAATTTTATGCTTC-TTCAACTCATAGAATGAATG
* * *
669139 TATGGAAATAGTTAAAAGAGTTAGGAGCACTCGAGCTCAAGAGTGAATTTAGGGAAGGTTTTGTT
845 TATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTT
* * * *
669204 GTTATAGACCTTTGGATAAATAATATGAAGATAATGTTAGAAGGTTTTCATTTTTCCAAAGTT
910 GTTACAGACCTTTGGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTG
* ** *
669267 GAGAAGTTAAATTGAGTAGTTTC-TTCACTACGTGGGCAAGATAGAGTATGGCAGACAAATATCA
1 GAGAAGTTAAATTGAGTAGTTTCGTT-ACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCA
* * * * *
669331 CCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTATTTATAGAAGAGTTCAAAAATAAGCAT
65 CCATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTAC
669396 ATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACAC
130 ATCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACAC
* * * * *
669461 GTGCATGTGTATGAATGTATGTTTAATAAGTTAAACAGATTTGTTGTTGAGATGATTACTGTTCA
195 GTGCATGTGTATGAATGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTATTCA
* * * * *
669526 CGGTACTTTTCATACAGTATAATACTGTTCTTATCGTATATTACTGTTCATAAAAACATTTTTGA
260 CAGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAACGTTTTTGA
*
669591 CTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATTAGTCCAA
325 CTTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAA
* * * ** * * * *
669656 ATGTTATGTTATTTTGTAAAAGTAAACATTTTCAAATGTCAATGTGACATCTCAGACTCATATAC
390 ATGATCTGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGTATCC
* *
669721 GGGTCGGATACGGGTTGGGGTGTTATATTTAATGGTATCAGAACTACGGA-TTAGCCGATTCTAG
455 GGGTCGGATACGGGTTGGGGTGTTACATTTAATGGTATCAGAGCTAC-GATTTAGCCGATTCTAG
* * *
669785 GCTTAAAACGAAGTGAAAAGTGCTTTAAAAAGTATACATGCCAACATAAAGTGAAAAAAGAAATC
519 GCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACAAAAAGTG-AAAAA-AAATC
*
669850 TGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAG
582 TGATCTGATAGTGTAAGGAGTGTATTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAG
* * * *
669915 GTATGTTCATGAGAGCTTCGAAAGTGAAGCACAAGGCGATGGACTGAAGGAAATAGCAATTCACC
647 GTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACC
* **
669980 TGCCCTGGCCAGGCAGGGAGAATAGCGAACACCTCAGAAAGTGCCTGTATAAGATTAGAGAATGT
712 TGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGT
670045 GTTTACAAAT
Statistics
Matches: 2430, Mismatches: 273, Indels: 27
0.89 0.10 0.01
Matches are distributed among these distances:
969 139 0.06
970 903 0.37
971 857 0.35
972 18 0.01
973 331 0.14
974 182 0.07
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (972 bp):
GAGAAGTTAAATTGAGTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCAC
CATAAGAATGTTAAAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACA
TCGATGACCAGTTTATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACG
TGCATGTGTATGAATGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTATTCAC
AGTACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAACGTTTTTGAC
TTAAATTTTTATAATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAA
TGATCTGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCGGACTCGTATCCG
GGTCGGATACGGGTTGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGC
TTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACAAAAAGTGAAAAAAAATCTGAT
CTGATAGTGTAAGGAGTGTATTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTAT
GATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCC
CTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTC
ATGATATTGAATGATATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGT
ATGAAAATAGTTAAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTG
TTACAGACCTTTGGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTG
Found at i:670488 original size:19 final size:19
Alignment explanation
Indices: 670464--670514 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
670454 TACTGTTCAC
*
670464 AATACTGTTTATACAGTAT
1 AATACTGTTCATACAGTAT
* *
670483 AATACTATTCATACCGTAT
1 AATACTGTTCATACAGTAT
*
670502 ATTACTGTTCATA
1 AATACTGTTCATA
670515 AAAACATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (19 bp):
AATACTGTTCATACAGTAT
Found at i:671470 original size:19 final size:19
Alignment explanation
Indices: 671419--671472 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
671409 GATTACTTTT
*
671419 CATAGTACTATTCATACAG
1 CATAATACTATTCATACAG
* * *
671438 CATAATATTGTTCATACCG
1 CATAATACTATTCATACAG
* *
671457 TATATTACTATTCATA
1 CATAATACTATTCATA
671473 AAAACGTTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (19 bp):
CATAATACTATTCATACAG
Found at i:672426 original size:19 final size:19
Alignment explanation
Indices: 672402--672445 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
672392 CACATTACTT
672402 TTCATACAATATAATATTG
1 TTCATACAATATAATATTG
** *
672421 TTCATACCTTATAGTATTG
1 TTCATACAATATAATATTG
672440 TTCATA
1 TTCATA
672446 AAAATGTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (19 bp):
TTCATACAATATAATATTG
Found at i:675316 original size:19 final size:19
Alignment explanation
Indices: 675292--675340 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
675282 CTATTCACAG
*
675292 TACTGTTTATACAGTATAA
1 TACTGTTCATACAGTATAA
* *
675311 TACTGTTCATACCGTATAT
1 TACTGTTCATACAGTATAA
675330 TACTGTTCATA
1 TACTGTTCATA
675341 AAAATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (19 bp):
TACTGTTCATACAGTATAA
Found at i:677048 original size:970 final size:971
Alignment explanation
Indices: 670089--682284 Score: 17516
Period size: 971 Copynumber: 12.6 Consensus size: 971
670079 TTAATGTTTG
* * * * * *
670089 AAAATAGTTATGAGCGCCCGAGCTCATGAGTGAATTTGGGGAAGATTTTGTTGTTACAGACTTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
*
670154 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTTGAGAAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* *
670219 GTAGTTTCGTTACTACATGGGCAAGCTAGAGTATGGTAGACAAATGTCACCATAAGAATGTTAAA
131 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
* * * * *
670284 AGATCAAGTGATGTAGTTCTTTTTTGTAGAAGAGTTCAAGAATAAGTACATCGATAACCAGTTTA
196 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
* * *
670349 TAAGAAAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGGATGTGTGTGAAT
261 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAAT
*
670414 GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTTAGTTGATTACTGTTCACAATACTGTTT-ATAC
326 GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACT-TTTCATAC
* * ** *
670478 AGTATAATACTATTCATACCGTATATTACTGTTCATAAAAACATTTTTGACTTAAATTTTTAAAA
390 AGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAA
* * * * *
670543 TAAAACATAATTTAATCATATATTATTGTATTTTCTTAATATAAATCAAAATGATATGCTATTTT
455 TGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTTT
* ** *
670608 GTAAATGTAAATATTTTGAAATGTCAATGTGACATCTCGGACTCGTA------TC-----CGGGT
520 GTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGGT
** * * * *
670662 TGGGGACTTACATTTAATGGTATCATAGTTACGATTTAGCCGATTCTAGGCTTAAAATGAAGTTA
585 TGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTCA
* * * * *
670727 AAAGTGTTTTAACAAGTATACATGTCAACACAAAGTG-AAAAAATCTAATCTAATAGTGTAAAGA
650 AAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAAAAAATCTGATCTGATAGTGTAAGGA
* * * *
670791 GTGTATTATATTGTAAATAGAGTTAAATTGTTATGTTATTTTAGAGGTATGATCATGAGAGCCTC
715 GTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCTTC
* * * *
670856 CATAGTGAAGCACAAGGTGATAGATTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGTGA
780 CAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGGGA
* * * *
670921 GAAGAGTGAACACCTCAGGGAGTACATGTATAAGATTAGAGAATGTTTTCATGATGTTGAATGAT
845 GAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGAT
*
670986 ATTCTGACGTGTTTCCAATTTTATGCTTCTTTAACTCATAGAATGAATGTATGAAAATAGTT
910 ATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
* *
671048 AAAAGAGTTAGGAGCATCCGAGCTCACGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
*
671113 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTTA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* *
671178 GTAG-TTCGTTACTACATGGGCAAGCTAAAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
131 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
*
671242 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCAATGACCAGTTTA
196 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
* * * * *
671307 TAAGACAAATGAAGCTAGAATACACAAGCTTGAAGCAAGGTACTCACACGTGCATGTGTATGAAT
261 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAAT
* * * * * *
671372 GTAAGTTTAATAAGTTAAACAGATTTGTTGATGAGTTGATTACTTTTCATAGTACTATTCATACA
326 GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATACA
* * * * * *
671437 GCATAATATTGTTCATACCGTATATTACTATTCATAAAAACGTTTTTGACTTAAAATTTTATAAT
391 GTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAAT
* * * *
671502 GAAACATAATTTTATCGAATATTATTGTCTTTCCTTAATATAAGTCCAAATGATCTGCTATTTTG
456 GAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTTTG
* * *
671567 TAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCT-AGGACTCGTATCAGAGTCAGATACGGGT
521 TAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCA-GACTCGTATCCGGGTCGGATACGGGT
* * * * *
671631 TAGTGTGTTACATTTAATGGTATCAGAGCTACGGTTTAGCCAATTCTAGGCTTAAAACTAAGTCA
585 TGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTCA
* * * *
671696 AAAGTGTTTTAAAAAGTATACATGTCAACACAAAGTGAAAGCAAAATATGATATGAGAGTGTAAG
650 AAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAA--AAAATCTGATCTGATAGTGTAAG
*
671761 GAGTGTACTATCTTGTAAATAGAGTGAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCT
713 GAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCT
* * * * * * *
671826 TTCAAAGTGAAGCACAAGGTGATAGACGGAAGTTAATAGCAATTCATCTGCTCTGGCCAGGCAAG
778 TCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGG
* * *
671891 GAGAAGAGCGAACACCTCAGGGAGTGCTTGTATAAGATTAGATAATGCTTTCATGATATTGAATG
843 GAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATG
* *
671956 ATATTCTGATGTGTTTCCAATTTTATGCTTCTTCAACTCATACAATGAATGTATGAAAATAGTT
908 ATATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
*
672020 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAAACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
* *
672085 GGATAAATGATATGATGATAATGTTAGAATGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
*
672150 GTAGTGTT-GTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCATCATAAGAATGTTAA
131 GTAGT-TTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAA
* * *
672214 AAGATCAAGTGACGTGGTTATTGCTTATAGAAGAGTTCAAGAATAAGTACATCGATAACCAGTTT
195 AAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTT
* * *
672279 ATAAGACAAATGAAACTAGAATATACAAGCTTGAAGAAAGGGAATTACACGTGCATGTGTATGAA
260 ATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAA
* * * * * *
672344 TGTAAGTTTAATAAGTTAAGCAGATTTATTACTGTGTTGGTTATTGTTCACATTACTTTTCATAC
325 TGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATAC
* * * *
672409 AATATAATATTGTTCATACCTTATAGTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAA
390 AGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAA
* * *
672474 TGAAACACAATTTAATCGTATATTATTGTATTTTCTTAATATATGTCCAAATGATCTGCTATTTA
455 TGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTTT
* * * * *
672539 GTAAAAGTAAAGGTTTTAAAATGTCAATGTGATACCTCAGACTCGTATACGGGTCGGAAACGGGT
520 GTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGGT
* * * * * *
672604 TGGGATGTTACTTTTAATGGTATCAGAGCTACAATTTAGCCGATTCTAGGCCTAAAATGAAGTCT
585 TGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTCA
* *
672669 AAAGTGTTTTAAAAAGTATACATGCTAACACAAAATGAAAAAAATCTGATCTGATAGTGTAAGGA
650 AAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAAAAAATCTGATCTGATAGTGTAAGGA
* * *
672734 GTGTATTGTCTTGTATAA-AGAGTTAAATTGTTATGTTATATTAGAGTTATGATCATGAGAGCTT
715 GTGTACTATCTTGTA-AATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCTT
* * * * * *
672798 CCAAGGTGAAGCATAAGGCGATAGACTGAAGGTAATAGAAATTAACCTGCCCTGGCAAGGAAGGG
779 CCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGGG
* * * * * * *
672863 AGAAGGGTGAACACCTCAGGGAATGCCTGTATAAGATCAGAGAATATTTTCGTGATAGTGAATGA
844 AGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGA
* * * *
672928 TATTCTGACGTGTTTCCAATTTTATGCTTCTTTAACTTATATAATGAATGTATGGAAATAGTT
909 TATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
672991 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
* * *
673056 GGATAAATGATATGAAAATAATGTTAGAAGTTTTTCATTTCTCCAAAGTGGAGGAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* *
673121 GTAGTGTT-GTTTACCACGTGGGCAAGCTAGAGTATGGTGGAAAAATGTCACCATAAGAATGTTA
131 GTAGT-TTCG-TTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTA
* * *
673185 AAATATCAAGTGATGTGGTTATTGTTTGTAGAAGAGTTCAAAAATAAGTACATCGATGACCAGTT
194 AAAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTT
* * * *
673250 TATAAGACAAATGAAACTAGAATTTACAAGCTTGAAGAAAGGGAATTACACGTGCATGTGTATGA
259 TATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGA
* *
673315 ATGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTATTGTTCACAATAATTTTCATA
324 ATGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATA
* * * * * *
673380 CAGTATAATACTGTTTATATCGTATATTATTGTTCATAAAAATGCTTTTGACTTAACTCTCTATA
389 CAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATA
*
673445 ATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAGTATAAGTCCAAATGATCTGCTATTT
454 ATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTT
* ** **
673510 TGTAAAAGTAAAGGCTTTGAAATGTCAATGTGACATCTCAGACTCGTATAAGGGTCGGATAATGG
519 TGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGG
* * * * *
673575 TTGGGGTGTTACATTTAAAGGTATCAGAACTATGATTTAGCCGATTTTAGGCTTAACACGAAGTC
584 TTGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTC
* * * *
673640 AAAAGTTTTTTACAAAGTATACATGCCAACAAAAAGTGAAAAAAATATGATCTGATAGTGTAAGG
649 AAAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAAAAAATCTGATCTGATAGTGTAAGG
* * *
673705 AGTGTACTATCTTGTAAATAGAGTCAAGTTGTTAAGTTATATTAGAGGTATGATCATGAGAGCTT
714 AGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCTT
* *
673770 CCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTAGCCAGGCAGGA
779 CCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGGG
673835 AGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGA
844 AGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGA
* * *
673900 TATTCTGATGTGTTTCCAATTGTATGCTTCTTCAACTCATACAATGAATGTATGAAAATAGTT
909 TATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
* *
673963 AAAAGAGTTAGGAGCACCTGAGCTCAAGAGTGAATTTGGGGAAGGATTTGTTGTTACAGACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
* * * * *
674028 CGATAAATTATATGAAGATAATGTTAAAAGGTTTTCATTTCTCCAAAGTAGAGAAGTTAAATTAA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* * * * *
674093 GTAGTTTCGTTACTA-GATGAGCAAGCTACAGTATGGTAGAGAAATGTCACCATAAAAATGTTAA
131 GTAGTTTCGTTACTACG-TGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAA
* * * * *
674157 AAGATTAAGTGACATAGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATTGGTGACCAGTTT
195 AAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTT
*
674222 ATAAGACAAATGAAGCTAAAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAA
260 ATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAA
* * * * * *
674287 TATAAGTTTAACAAGTTAAGCAGATTTCTTGCTGAGTTGATTACTGGTCACAGTACTTTTCATAT
325 TGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATAC
* * * * *
674352 AGTATAATAATGTTCATATCGTATATCACTATTCATAAAAATGTTTTTGACTTAAATTTTTATAA
390 AGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAA
* * * * *
674417 TGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATTAGGCTAAAT-ATTATGTTATTT
455 TGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGA-TCTGCTATTT
* * *
674481 TGTAAAAGTAAACGTTTTCAAATATCAATGTGACATCTCAGACTC--A------T---ATACGGG
519 TGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGG
* * *
674535 TTGGGGTGTTACATTTAATGGTATCAAAACTACAATTTAGCCGATTCTAGGCTTAAAACGAAGTC
584 TTGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTC
* * * * *
674600 AAAAGTGTTTTAAAGAGTATAAATGCTAACATAAAGTGAAAAAAAAT-TAGATATGATAGTGTAA
649 AAAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTG-AAAAAAATCT-GATCTGATAGTGTAA
* * *
674664 GGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGTTCATGATAGT
712 GGAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGC
* ** * *
674729 TTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGAAATAGCAATTCAATTACCCTGCCCAGGCAG
777 TTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAG
* ** *
674794 GGAGAAGAGCAAACACCTCAGAAAGTGCCTGTATAAGATTAGAGAATCTTTTCATGATATTGAAT
842 GGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAAT
* * ** *
674859 GATATTCTGATGTGTTTCCAATTTTATGTTTCTTCAACTCATTCAATGATTGTATG-AAA-A--T
907 GATATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
* *
674920 -----AGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGATGGTTTTGTTGTTACATACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
* *
674980 AGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTTGAGAAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
*
675045 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTAGACAAATGTCACCATAAGAATGTTAAA
131 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
* * * *
675110 AGATCAAGTGACGTAGTTCTTGTTTGTAGAAGAGTTCAAGAATAAGTACATCAATAACCA-TGTT
196 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGT-TT
* * *
675174 ATAAGAAAAATGAAGCTAGAATATACGAGCTTGAAACAAGGGAATTAAACGTGCATGTGTATGAA
260 ATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAA
* * * * * * *
675239 TGAAAGTTTAATAAATTAAGCAAATTTGTTTCTTAGTTGATTACTATTCACAGTACTGTTT-ATA
325 TGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACT-TTTCATA
* * * *
675303 CAGTATAATACTGTTCATACCGTATATTACTGTTCATAAAAATATTTTTGACTTAATTTTTTAAA
389 CAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATA
* * * * *
675368 ATGAAACATAATTTAATCGTATTTTATTTTATTTTCTTAATATAAATCCAAATGATATACTATTT
454 ATGAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTT
* * *
675433 TGTAAATGTAAAGGTTTTGAAATGTCAATGTGACATCTCATACTCGTATCCGGGTTGGATACGGG
519 TGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGG
**
675498 TTGGGGACTTACATTTAATGGTATCAGA-CTATCGATTTAGCCGATTCTAGGCTTAAAACGAAGT
584 TTGGGGTGTTACATTTAATGGTATCAGAGCTA-CGATTTAGCCGATTCTAGGCTTAAAACGAAGT
* * *
675562 TAAAATTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAAAAAATCTAATCTGATAGTGTAAG
648 CAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAAAAAATCTGATCTGATAGTGTAAG
* * * *
675627 AAGTGTACCATATTCTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCT
713 GAGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCT
*
675692 TCCCAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGG
778 TCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGG
* * * *
675757 AAGAAGAGCGAACACCTCAGGGAGTGCTTGTATAAGATTAAAGAATGTTTTCATGATAGTGAATG
843 GAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATG
* * *
675822 ATATTCTGACGTGTTTCCAATTTTATACTTCTTTAACTCATAGAATGAATGTATGGAAATAGTT
908 ATATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
*
675886 AAAATAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
* * *
675951 GGATAAATGATATTAAGATAACGTTAGAAGTTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* *
676016 GTAGTTTCTTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATATCACCATAAGAATGTTAAA
131 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
*
676081 AGATCAAGTGATGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
196 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
* * * *
676146 TAAGATAAATTAAGCTAGAATATAAGAGCTTGAAGTAAGGGAATTACACGTGCATGTGTATGAAT
261 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAAT
* * *
676211 ATAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATAATTTTCATATA
326 GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATACA
* * *
676276 GTATAATACTGTTTATATCGTATATTATTGTTCATAAAAATGCTTTTGACTTAAATTTTTATAAT
391 GTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAAT
* * *
676341 GAAACATAATTTAATCATATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTACTATTTCG
456 GAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTTTG
* * * **
676406 TAAAAGTAAAAGCTTTGAAATGTCAATGTGACATATCAGACTCGTATAAGGGTCGGATACGGGTT
521 TAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGGTT
* * * * * * *
676471 GGGGTTTTACATTTAAAGATATCAAAACTACGATTTAGCCGATTTTAGGCTTAAAACAAAGTCAA
586 GGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTCAA
* * * *
676536 AAGCGTTTTACAAAGTATACATGCCAACAAAAAGTGAAAAAAAT-TGATATGATAGTGTAAGGAG
651 AAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAAAAAATCTGATCTGATAGTGTAAGGAG
*
676600 TGTACTATCTTGTAAATAGAGTTAAATTGTTAAGTTATATTAGAGGTATGATCATGAGAGCTTCC
716 TGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCTTCC
* **
676665 AAACTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGAAAG
781 AAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGGGAG
*
676730 AATAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGATA
846 AAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGATA
* * * *
676795 TTCTGATGTGTTTCCAATTTTATGCTTATTCAACTCATACAATGAATGTATGAAAAGAGTT
911 TTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
676856 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
* * * *
676921 GGCTAAATGATATTAAGATAATGTTAGAAGATTTTTATTTCTCCAAAGTGGAGAAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* * * *
676986 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATAGTGGAGAAATGTCATCATAATAATGTTAAA
131 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
* *
677051 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAATTACGTCGATGACCAGTTTA
196 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
677116 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTG--T--A-
261 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAAT
*
677176 -T--G------AA--T------A---------GAGTTGATTACTGTTCACAATACTATTCATACA
326 GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATACA
* * * * ** *
677215 GTATAATATTGTTCATTCCATATAATATTGTTCATAAAAACATTTTTGAATTAAATTTTTATAAT
391 GTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAAT
* * * **
677280 GAAACATATTTTAATCGTATATTTTTTTTATTTTCTTAATATAAGTCCAAATGATCTTTTATTTT
456 GAAACATAATTTAATCGTATA-TTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTTT
* * * *
677345 GTAAAAGTAAAGGTTTTGCAATGTCAATGTGACATCTC-GTACTCCTATCCGGGTCAGATACAGG
520 GTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAG-ACTCGTATCCGGGTCGGATACGGG
* ** * *
677409 TTGGGGTCTTACATTTAATGGTATTGGAGCTACGATTTAGCCGATTATAGGCTTAAAATGAAGTC
584 TTGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTC
*
677474 AAAAGTGTTTTAAAAAGTATACATGCCAAAACAAAGTGAAAAAAATCTGATCTGATAGTGTAAGG
649 AAAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAAAAAATCTGATCTGATAGTGTAAGG
* * * *
677539 AGTG-ACTTGTCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGTTATGATCACGAAAGCT
714 AGTGTAC-TATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCT
* *
677603 TCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAAGAAGG
778 TCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGG
* * * * **
677668 GAGAAGAGCGAACACCTAAGGGAGTACCTATATAAGATAAGAGAATGTTTTCATGACGTTGAATG
843 GAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATG
* *
677733 ATATTCTGACGTGTTTCCAATTTTATGCTTCTTTAACTCATAGAATAAATGTATG-AAATAGTT
908 ATATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
* *
677796 AAAAGAGTTAGGAGCACCCGAGCTCAATAGTGAATTTGGGGAAGGTTTTGTTGTTATAGACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
* *
677861 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTTATTTCTCCAAAGTTGAGAAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* *
677926 GTAG-TTC-TTCACTACGTGGGCAAGATAGAGTATGGTAGACAAATGTCACCATAAGAATGTTAA
131 GTAGTTTCGTT-ACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAA
* *
677989 AAGATCAAGTGACGTGGTTGTTGTTTGTAGAAGAGTTCAAGAATAAGTACACCGATGACCAGTTT
195 AAGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTT
* * *
678054 ATAAGACAAATGAAGCTAGAATATACTAGCTTGAAGCAAGAGAATTACAAGTGCATGTGTATGAA
260 ATAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAA
*
678119 TGTATGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACGGTACTGTTCATAT
325 TGTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTT--C---A-----C----
* * *
678184 AGTATAATACTATTCATATATTATAATACTGTTCATACCGTATATTATTGTTCAT-AAAATGTTT
376 -----AATACTTTTCATACAGTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTT
* *
678248 TTGACTTAAATTTTTATAATAAAACATAATTTAATCGTATAGTATTGTATTTTCTTATTTTCTTA
436 TTGACTTAAATTTTTATAATGAAACATAATTTAATCG--TA-TA-T-TA--TT-GTATTTTCTTA
* * * *
678313 ATATACGTCCAAATGATCTGTTATTTTGTAAAATTAATGGTTTTGAAATGTCAATGTGACATCTC
493 ATATAAGTCCAAATGATCTGCTATTTTGTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTC
* * * * *
678378 ATATTCGTGTCCGGATCGGGTACGGGTTGGGGTGTTACATTTAATGGTATCAGAGCTAC-AGTTT
558 AGACTCGTATCCGGGTCGGATACGGGTTGGGGTGTTACATTTAATGGTATCAGAGCTACGA-TTT
* * * * * *
678442 AGCCGATTCTAGGATTAAAACGAAGTCAAAAGTATCTTAAAAAATATATATGCCAACAAAAAGTG
622 AGCCGATTCTAGGCTTAAAACGAAGTCAAAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTG
* * * *
678507 AAAAAAAAATTTGAACTTATAGTGTAAGGAGTGTACTGTCTTGTAAATCA-AGTTAAATTGTTAT
687 --AAAAAAATCTGATCTGATAGTGTAAGGAGTGTACTATCTTGTAAAT-AGAGTTAAATTGTTAT
* * *
678571 GTTACATTAGGGGTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACCGAAGGTAA
749 GTTATATTAGAGGTATGATCATGAGAGCTTCCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAA
* ** * * * * *
678636 CATAAATTCACCTGCCCTTGCCAGGAAGAGAGAAGAGAGAACACCTCAGAGAGTGCCTGTATAAG
814 TAGCAATTCACCTGCCCTGGCCAGGCAGGGAGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAG
* * *
678701 ATTCGAAAATGTTTTCATGATGTTGAATGATATTCTGACGTGTTTCCAATTTTATGCTTCTTCAA
879 ATTAGAGAATGTTTTCATGATATTGAATGATATTCTGACGTGTTTCCAATTTTATGCTTCTTCAA
*
678766 CTCAAAGAATGAAAT-TATGAAAATAGTT
944 CTCATAGAATG-AATGTATGAAAATAGTT
*
678794 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAAACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
** *
678859 ATATAAATGATATGAAGATAATGTTAGAAGATTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* * *
678924 GTAGTTTCGTTACAATGTGGGCAAGCTAGAGTATGGTGGACAAATGTCAGCATAAGAATGTTAAA
131 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
* * * *
678989 AGATCAAGTGATGAGGTTATTGTTTGTAGAAGAGTTGAAGAATAAGTACATCGATGAACAGTTTA
196 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
* * * *
679054 TAAGATAAATGAAGCTAGAATATACTAGCTTGAAGCAAGGGTATTACACGTGCATATGTATGAAT
261 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAAT
** * * *
679119 GTAAGTTTAATAAGTTAAAAAGATTTGTTGCTGAGTTTATTACTGTTCACAGTACTTTTCATATA
326 GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATACA
679184 GTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAAT
391 GTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAAT
* *
679249 AAAACATAATTTAATCGTATATTATTGTATTTTCTTAATA-AATGTCCAAATGATATGCTATTTT
456 GAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAA-GTCCAAATGATCTGCTATTTT
* *
679313 GTAAAAGTAAAGGTTTTGAAATGTTAATGTGACATCTCGGACTCGTATCCGGGTCGGATACGGGT
520 GTAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGGT
* * * *
679378 TGGGGTGTTACATTTAATGGTATCAGAGCTACGGTTTAGCCGATTCTAGACTTAAAACAAAGTTA
585 TGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTCA
*
679443 AAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAACAAAATCTGATCTGATAGTCTAAGG
650 AAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAA-AAAATCTGATCTGATAGTGTAAGG
* * *
679508 AGTGTATTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAAGTATGATCATTAGAGCTT
714 AGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCTT
* * *
679573 CCAAAGTGAAGCACAAGCCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAAGTAGGG
779 CCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGGG
* * *
679638 AGAAGAGCGAACACCTCAAGGAGTGCATGTATAAGATTAGAGAATGTTTTCATGATGTTGAATGA
844 AGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGA
* *
679703 TATTCTGACATGTTTCCAATTTTATTCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
909 TATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
*
679766 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACATACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
* * * * *
679831 TGATAAATGATATGAATATAATATTAGAAGGTTTTCATTTCTCCAAAGTAGAGAAGTTAAACTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
*
679896 GTAGTTTCGTTACTACCTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
131 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
* * *
679961 AGATCAAGTGATGTGGTTATTATTTGTAGAAGAGTTCAATAATAAGTACATCGATGACCAGTTTA
196 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
* * *
680026 TAAGACAAATGAATCTAGAATTTACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTACGAAT
261 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAAT
* * * * * * * * *
680091 GTAAGTGTAA-AAGATATGTAGATTTGTTGTTGAGTTGATTAGTATTCACAATACTGTTCATATA
326 GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATACA
* * * ** *
680155 GTATAATACTGTTCATACCATATATTACTATTCATAAAAACATTTTTTACTTAAATTTTTATAAT
391 GTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAAT
* *
680220 GAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGGTCTGTTATTTTG
456 GAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTTTG
* *
680285 TAAAAATAAAGGTTTTGAAATGTCAAAGTGACATCTC-GAACTCGTATCCGGGTCGGATACGGGT
521 TAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAG-ACTCGTATCCGGGTCGGATACGGGT
* * * *
680349 TGGGGTGTTACATTTAATAGTATCAGAGCTAGGGTTTAGCCAATTCTAGGCTTAAAACGAAGTCA
585 TGGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTCA
* * * *
680414 AAAGCGTTTTAAAAACTATAAATGCCAACACAAAGTGAAAAAAAATCTGATTTGATAGTGTAAGG
650 AAAGTGTTTTAAAAAGTATACATGCCAACACAAAGTG-AAAAAAATCTGATCTGATAGTGTAAGG
* * * * *
680479 AGTGTATTGTTTTGTAAATAGAGTTAAATTGTTGTGTTATATTAGAGGTATGATCAAGAGAGCTT
714 AGTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCTT
* * *
680544 CCAAAGTGAAGCACAAGGCGATAGACTTAAGGTAATAGAAATTCACCTGGCCTGGCCAGGCAGGG
779 CCAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGGG
* *
680609 AGAAAAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATG-TTTCATGATGTTGAATGA
844 AGAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGA
* * * * *
680673 TATTCTGATGTGTTTCTAATTTTATTCTTCTTCAACTCATAGAATGAATTTATGAAAATTGTT
909 TATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
*
680736 AAAAGAGTTAGGAGCACCTGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
* * *
680801 AGATAAATGATATAAAGATAATGTTAGAAGGTTTTCATTTCGCCAAAGTGGAGAAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* *
680866 GTAGTTTCGTTACTACGTGGGCAATCTAGAGTATGGTGGACAAATGTCACCATAAGAATATTAAA
131 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
* *
680931 AGTTCAAGTGACGTGGTTATTATTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
196 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
* *
680996 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGAGAAGTACACGTGCATGTGTATGAAT
261 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAAT
* * * * * *
681061 GTAAGTTTAATAAGTTAAACAGATTTGTTGTTGAGTTTATTACTATTCACAGTACTGTTCATACA
326 GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATACA
* *** * *
681126 GTATAATATTGTTCATACCGTATATTATTGTTCATAAAAAAAATTTTGACTTAAAGTTTTAGAAT
391 GTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAAT
* *
681191 GAAACATATTTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTACTATTTTG
456 GAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTTTG
* * * * *
681256 TAAAAGTAAAGGTTTTGAAATGTCAATATGACATCTCGGACTCGTATCCGGATCGGAAATGGGTT
521 TAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGGTT
* * * ** *
681321 GGGGTCTTATATTTAATGGTATCAGATCTATTATTTAGCCGATTCTAGGCTTATAACGAAGTCAA
586 GGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTCAA
*
681386 AAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAAAAAAATCTGATCTGATAGTGTAAGTA
651 AAGTGTTTTAAAAAGTATACATGCCAACACAAAGTG-AAAAAAATCTGATCTGATAGTGTAAGGA
* * * * *
681451 GTGTATTGTCTTGTAAATATAGTTAAATTGTTAAGTTATATTAGAGGTATGATCATGAGAGCTTA
715 GTGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCTTC
* **
681516 CAAAGTGAAGTACAAGGTAATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGGGA
780 CAAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGGGA
* * *
681581 GAAGAGCGAACACCTCAGGGAGTACATGTATAAGATTAGAGAATGTTTTCATGATGTTGAATGAT
845 GAAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGAT
*
681646 ATTCTGACGTGTTTCCAATTTTATGCTTCTTTAACTCATAGAATGAATGTATGAAAATAGTT
910 ATTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
681708 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
1 AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
*
681773 GAATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
66 GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
* * *
681838 GTAGTTTCATTACTATGTGGGCAAGCTAGAGTATGGTGGGCAAATGTCACCATAAGAATGTTAAA
131 GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
* *
681903 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGTTGACCAATTTA
196 AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
*
681968 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTTTATGAAT
261 TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAAT
* * * *
682033 GTAAGTTTTATAAGTTAGGCAGACTTGTTGCTTAGTTGATTACTG-------------T--T-CA
326 GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATACA
* * * *
682082 G---AATATTGTTCATACCGTATATTACTGTTCATTAAAACGTTTTTGACTTAAATTTTTATAAT
391 GTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAAT
*
682144 GAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAATCCAAATGATCTGCTATTTTG
456 GAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTTTG
* * * * *
682209 TAAAAGTAAAGGTTTTGAATTTTCAACGTGACATCTCGGACTCGTATCCGGGTCGGATACGGGTA
521 TAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGGTT
682274 GGGGTGTTACA
586 GGGGTGTTACA
682285 ACGCTTATAT
Statistics
Matches: 10085, Mismatches: 1012, Indels: 286
0.89 0.09 0.03
Matches are distributed among these distances:
938 2 0.00
939 272 0.03
940 325 0.03
941 242 0.02
943 1 0.00
945 1 0.00
947 1 0.00
948 1 0.00
951 1 0.00
952 493 0.05
953 189 0.02
954 2 0.00
955 1 0.00
956 5 0.00
957 4 0.00
958 384 0.04
959 127 0.01
960 101 0.01
961 253 0.03
962 248 0.02
963 101 0.01
964 4 0.00
966 2 0.00
968 1 0.00
969 96 0.01
970 968 0.10
971 2369 0.23
972 2246 0.22
973 667 0.07
974 5 0.00
975 1 0.00
976 2 0.00
977 1 0.00
978 2 0.00
979 2 0.00
980 48 0.00
981 46 0.00
988 41 0.00
989 45 0.00
990 2 0.00
991 4 0.00
992 1 0.00
994 4 0.00
995 177 0.02
997 241 0.02
998 140 0.01
999 214 0.02
1000 2 0.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (971 bp):
AAAAGAGTTAGGAGCACCCGAGCTCAAGAGTGAATTTGGGGAAGGTTTTGTTGTTACAGACCTTT
GGATAAATGATATGAAGATAATGTTAGAAGGTTTTCATTTCTCCAAAGTGGAGAAGTTAAATTGA
GTAGTTTCGTTACTACGTGGGCAAGCTAGAGTATGGTGGACAAATGTCACCATAAGAATGTTAAA
AGATCAAGTGACGTGGTTATTGTTTGTAGAAGAGTTCAAGAATAAGTACATCGATGACCAGTTTA
TAAGACAAATGAAGCTAGAATATACGAGCTTGAAGCAAGGGAATTACACGTGCATGTGTATGAAT
GTAAGTTTAATAAGTTAAGCAGATTTGTTGCTGAGTTGATTACTGTTCACAATACTTTTCATACA
GTATAATACTGTTCATACCGTATATTATTGTTCATAAAAATGTTTTTGACTTAAATTTTTATAAT
GAAACATAATTTAATCGTATATTATTGTATTTTCTTAATATAAGTCCAAATGATCTGCTATTTTG
TAAAAGTAAAGGTTTTGAAATGTCAATGTGACATCTCAGACTCGTATCCGGGTCGGATACGGGTT
GGGGTGTTACATTTAATGGTATCAGAGCTACGATTTAGCCGATTCTAGGCTTAAAACGAAGTCAA
AAGTGTTTTAAAAAGTATACATGCCAACACAAAGTGAAAAAAATCTGATCTGATAGTGTAAGGAG
TGTACTATCTTGTAAATAGAGTTAAATTGTTATGTTATATTAGAGGTATGATCATGAGAGCTTCC
AAAGTGAAGCACAAGGCGATAGACTGAAGGTAATAGCAATTCACCTGCCCTGGCCAGGCAGGGAG
AAGAGCGAACACCTCAGGGAGTGCCTGTATAAGATTAGAGAATGTTTTCATGATATTGAATGATA
TTCTGACGTGTTTCCAATTTTATGCTTCTTCAACTCATAGAATGAATGTATGAAAATAGTT
Found at i:677229 original size:19 final size:18
Alignment explanation
Indices: 677207--677250 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
677197 CACAATACTA
677207 TTCATACAGTATAATATTG
1 TTCATACA-TATAATATTG
*
677226 TTCATTCCATATAATATTG
1 TTCA-TACATATAATATTG
677245 TTCATA
1 TTCATA
677251 AAAACATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 1 0.05
19 18 0.82
20 3 0.14
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (18 bp):
TTCATACATATAATATTG
Found at i:678199 original size:19 final size:19
Alignment explanation
Indices: 678172--678239 Score: 82
Period size: 19 Copynumber: 3.6 Consensus size: 19
678162 CTGTTCACGG
678172 TACTGTTCATATAGTATAA
1 TACTGTTCATATAGTATAA
* *
678191 TACTATTCATATATTATAA
1 TACTGTTCATATAGTATAA
** *
678210 TACTGTTCATACCGTATAT
1 TACTGTTCATATAGTATAA
*
678229 TATTGTTCATA
1 TACTGTTCATA
678240 AAATGTTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.46
Consensus pattern (19 bp):
TACTGTTCATATAGTATAA
Found at i:679198 original size:19 final size:19
Alignment explanation
Indices: 679171--679219 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
679161 CTGTTCACAG
* *
679171 TACTTTTCATATAGTATAA
1 TACTGTTCATACAGTATAA
* *
679190 TACTGTTCATACCGTATAT
1 TACTGTTCATACAGTATAA
*
679209 TATTGTTCATA
1 TACTGTTCATA
679220 AAAATGTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (19 bp):
TACTGTTCATACAGTATAA
Found at i:680178 original size:19 final size:19
Alignment explanation
Indices: 680140--680190 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
680130 TAGTATTCAC
*
680140 AATACTGTTCATATAGTAT
1 AATACTGTTCATACAGTAT
680159 AATACTGTTCATACCA-TAT
1 AATACTGTTCATA-CAGTAT
* *
680178 ATTACTATTCATA
1 AATACTGTTCATA
680191 AAAACATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 27 0.96
20 1 0.04
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.41
Consensus pattern (19 bp):
AATACTGTTCATACAGTAT
Found at i:681140 original size:19 final size:19
Alignment explanation
Indices: 681116--681161 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
681106 TTCACAGTAC
681116 TGTTCATACAGTATAATAT
1 TGTTCATACAGTATAATAT
* *
681135 TGTTCATACCGTATATTAT
1 TGTTCATACAGTATAATAT
681154 TGTTCATA
1 TGTTCATA
681162 AAAAAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (19 bp):
TGTTCATACAGTATAATAT
Found at i:685723 original size:44 final size:44
Alignment explanation
Indices: 685646--685766 Score: 122
Period size: 44 Copynumber: 2.8 Consensus size: 44
685636 GCACAATTTT
* *
685646 ATCACAGAAGGAGTTAGATCATCATCAATATTTTGTTCGATTCA
1 ATCACAGAAGGAGGTAGATCAACATCAATATTTTGTTCGATTCA
** * **
685690 ATCACAGAAGGAGGTAGATCAACAT-TGTCATTTTGTTGGATTTT
1 ATCACAGAAGGAGGTAGATCAACATCAAT-ATTTTGTTCGATTCA
*
685734 ATCATAGAAGGAGGT-GAATCAACAT-AATCATTT
1 ATCACAGAAGGAGGTAG-ATCAACATCAAT-ATTT
685767 CACTCGATTT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 2 0.03
44 63 0.97
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (44 bp):
ATCACAGAAGGAGGTAGATCAACATCAATATTTTGTTCGATTCA
Found at i:689910 original size:151 final size:151
Alignment explanation
Indices: 689633--689910 Score: 380
Period size: 151 Copynumber: 1.8 Consensus size: 151
689623 TTCTTTTCTC
* *
689633 AAATATATTCAATATATGTATTTTATCTAAAAAATTAAAGCAATATTATTTCGTATGGGAAATCT
1 AAATATATTCAATATATGTATTTTATCTAAAAAATTAAAGCAATATTACTTCGTATAGGAAATCT
* * * * *
689698 ATGCAAGCACACCTTAATTAACAAGGAGTGTGCTTTTGAGGATTGTTCGTACAAAATAATACATT
66 ATGCAAACACACCTTAACTAACAAAGAGTGTGCTTTTAAGGATTGTTCGTACAAAAAAATACATT
689763 TTTTTATTCTAATGAATTTTA
131 TTTTTATTCTAATGAATTTTA
* *
689784 AAATATATTTAATATATGTA-TTTATCTAAAAAAATTAAGGCAATATTACTTCGTATAGGAAATC
1 AAATATATTCAATATATGTATTTTATCT-AAAAAATTAAAGCAATATTACTTCGTATAGGAAATC
* ** * * * *
689848 TATGGAAATGCGCCTTGACTGACAAAGAGTGTG-TTTTCAAGGATTGTTTGTACAAAAAAATAC
65 TATGCAAACACACCTTAACTAACAAAGAGTGTGCTTTT-AAGGATTGTTCGTACAAAAAAATAC
689911 TCTTTTAAAT
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
150 11 0.10
151 98 0.90
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (151 bp):
AAATATATTCAATATATGTATTTTATCTAAAAAATTAAAGCAATATTACTTCGTATAGGAAATCT
ATGCAAACACACCTTAACTAACAAAGAGTGTGCTTTTAAGGATTGTTCGTACAAAAAAATACATT
TTTTTATTCTAATGAATTTTA
Found at i:699725 original size:60 final size:60
Alignment explanation
Indices: 699621--699738 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 60
699611 CATTTGACAC
* * * * * *
699621 GATGCCTTCAAGTTCCAAGGGGAGGCATTCAACTACGAGCTTATTTGACCTCAATGTCGA
1 GATGACTTCAAGTTCCAAGGGGAGACATTCAAATACCAGCTTATTCGACCTAAATGTCGA
* *
699681 GATGACTTCAAGTT-CAAGGGGAAGATATTCAAATACCAGTTTATTCGACCTAAATGTC
1 GATGACTTCAAGTTCCAAGGGG-AGACATTCAAATACCAGCTTATTCGACCTAAATGTC
699739 AGCATCGTGG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 7 0.14
60 42 0.86
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (60 bp):
GATGACTTCAAGTTCCAAGGGGAGACATTCAAATACCAGCTTATTCGACCTAAATGTCGA
Found at i:702405 original size:3 final size:3
Alignment explanation
Indices: 702399--702498 Score: 92
Period size: 3 Copynumber: 33.0 Consensus size: 3
702389 TTTAATTTTA
* * * *
702399 AAT AAT AAT AAT ATT TAT AAT AAT AAT AAT AAT ATT TAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * ** *
702447 AAT AAT ACT AAT ATTT AAT TAT AAT AAT AAT AGT AAT TTT AAA AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
702493 AAT AAT
1 AAT AAT
702499 TTAAGTAAAA
Statistics
Matches: 74, Mismatches: 22, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
3 72 0.97
4 2 0.03
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (3 bp):
AAT
Found at i:702420 original size:18 final size:18
Alignment explanation
Indices: 702391--702450 Score: 79
Period size: 18 Copynumber: 3.3 Consensus size: 18
702381 ATTATTTTTT
702391 TAAT-TTTA-AATAATAA
1 TAATATTTATAATAATAA
702407 TAATATTTATAATAATAATAA
1 TAATA-TT-T-ATAATAATAA
702428 TAATATTTATAATAATAA
1 TAATATTTATAATAATAA
702446 TAATA
1 TAATA
702451 ATACTAATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.10
18 17 0.44
19 2 0.05
20 3 0.08
21 13 0.33
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TAATATTTATAATAATAA
Found at i:702425 original size:21 final size:21
Alignment explanation
Indices: 702399--702453 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
702389 TTTAATTTTA
702399 AATAATAATAATATTTATAAT
1 AATAATAATAATATTTATAAT
702420 AATAATAATAATATTTATAAT
1 AATAATAATAATATTTATAAT
702441 AATAATAATAATA
1 AATAATAATAATA
702454 CTAATATTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AATAATAATAATATTTATAAT
Done.