genome.fa.s1525.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001525.1 Hibiscus syriacus cultivar Beakdansim tig00002991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86539

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2977--3055	40	2.0	41	92	2	133	36	21	21	20	1.95
2971--3053	20	4.2	20	85	3	114	37	24	20	18	1.94
3027--3122	33	2.8	33	88	3	129	41	19	23	14	1.89
3060--3128	19	3.8	19	73	21	76	44	18	21	14	1.85
3137--3232	33	2.9	34	88	3	140	13	23	20	41	1.88
3334--3368	13	2.7	13	86	0	52	51	22	0	25	1.48
5309--5415	20	5.3	20	95	0	178	39	20	19	20	1.93
5480--5585	20	5.6	20	78	13	125	17	19	21	40	1.91
5441--5580	74	1.9	74	88	2	210	17	19	20	42	1.90
7451--7505	20	2.8	20	80	0	65	49	21	14	14	1.79
7564--7619	20	2.8	20	88	0	85	21	19	23	35	1.96
7919--7980	18	3.0	22	69	26	62	17	16	38	27	1.91
8175--8227	20	2.7	20	93	0	88	24	20	18	35	1.95
8215--8269	21	2.7	20	82	5	65	36	18	25	20	1.94
11116--11266	82	1.8	82	85	2	214	30	19	19	30	1.97
11110--11298	41	4.6	41	74	9	136	30	18	19	31	1.96
11150--11507	82	4.4	82	78	12	287	29	20	19	30	1.97
11232--11507	41	6.8	41	85	5	330	28	21	19	29	1.98
11248--11484	76	3.0	76	85	6	296	29	21	19	29	1.98
11905--11943	19	2.0	20	90	5	62	5	15	25	53	1.62
14520--14580	22	2.8	23	82	9	74	22	4	19	52	1.65
15863--15919	21	2.7	21	83	0	69	24	3	21	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16056--16154	44	2.2	44	82	7	121	32	23	20	24	1.98
16170--16326	43	3.7	42	86	5	190	34	21	19	24	1.96
20016--20055	12	3.3	12	89	0	62	7	25	15	52	1.68
22036--22113	38	2.1	38	95	0	138	34	17	14	33	1.90
22087--22204	42	2.8	41	78	8	105	31	18	16	33	1.94
22224--22348	40	3.1	40	78	10	128	31	20	14	33	1.93
30378--30430	27	2.0	27	84	0	70	49	1	9	39	1.46
32171--32343	85	2.0	85	97	0	328	28	15	16	39	1.89
33453--33573	11	11.7	11	71	18	66	58	1	1	38	1.18
33488--33573	30	2.9	30	96	0	154	60	1	0	38	1.04
33488--33574	19	4.4	18	73	19	68	59	1	0	39	1.05
34033--34071	7	5.6	7	87	0	60	48	33	0	17	1.48
36294--36338	11	4.1	11	82	0	63	24	15	24	35	1.94
36296--36340	22	2.0	22	91	0	72	24	15	24	35	1.94
41157--41206	22	2.2	23	85	3	75	54	28	0	18	1.44
42712--42759	24	2.0	25	84	11	66	31	10	4	54	1.53
43142--43214	23	3.3	22	73	7	76	24	23	26	26	2.00
46895--46934	20	2.0	21	85	5	55	25	17	10	47	1.78
48928--48975	20	2.3	21	92	3	80	31	25	22	20	1.98
54519--54575	29	2.0	29	86	6	80	50	0	1	47	1.11
54804--54839	18	1.9	18	88	5	54	50	0	0	50	1.00
56236--56262	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56399--57114	76	9.4	76	96	0	1288	34	22	19	23	1.97
57792--57846	22	2.5	22	93	0	101	40	14	10	34	1.81
59172--59347	74	2.4	74	82	4	212	28	21	18	32	1.96
60303--60638	114	2.9	113	91	0	528	31	19	15	33	1.93
67279--67328	13	3.6	14	74	17	50	68	2	0	30	1.01
67816--67872	29	2.0	29	86	6	80	50	0	1	47	1.11
68101--68136	18	1.9	18	88	5	54	50	0	0	50	1.00
68159--68186	13	2.2	13	100	0	56	64	7	0	28	1.20
71868--71913	17	2.7	17	96	0	83	67	2	4	26	1.21
71903--72175	137	2.0	135	92	1	447	31	21	19	28	1.97
72448--72484	3	12.7	3	94	5	67	67	0	0	32	0.91
72808--72944	60	2.3	60	80	9	154	32	17	16	32	1.93
73162--73307	59	2.5	59	92	2	240	30	16	17	34	1.92
80163--80290	54	2.4	54	96	3	233	28	17	22	31	1.96
80442--80479	20	1.9	20	94	0	67	18	15	34	31	1.92
82343--82424	23	3.6	22	76	14	87	25	21	26	25	2.00
82321--82443	44	2.8	42	75	16	117	24	19	27	28	1.99

Tables:   1

The End!