Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001526.1 Hibiscus syriacus cultivar Beakdansim tig00002992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102155

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10825--10928
45
2.3
45
100
0
208
33
11
21
33
1.89
12477--12686
106
2.0
106
91
1
341
41
10
4
43
1.57
12623--12679
28
2.0
28
89
0
87
49
10
3
36
1.55
16992--17263
80
3.4
81
90
2
433
21
21
26
30
1.98
20394--20429
17
2.1
17
100
0
72
44
19
0
36
1.51
22679--22725
20
2.3
20
100
0
94
17
29
29
23
1.97
26573--26612
21
1.9
21
85
10
55
35
10
2
52
1.48
29240--29347
35
3.2
34
68
7
94
39
11
16
32
1.84
29205--29399
67
2.9
65
81
5
212
37
13
17
30
1.89
30730--30759
15
1.9
16
93
6
53
76
0
0
23
0.78
31241--31287
24
2.0
24
83
8
60
57
12
2
27
1.47
34591--34638
14
3.4
14
76
2
51
72
2
14
10
1.19
34939--34963
11
2.3
11
100
0
50
84
0
0
16
0.63
40105--40150
15
2.7
18
80
19
71
19
4
4
71
1.20
41194--41240
2
23.5
2
95
0
85
48
2
0
48
1.13
42053--42192
70
2.0
71
94
1
246
36
17
15
30
1.91
44181--44225
20
2.2
21
84
7
58
20
6
2
71
1.20
47548--47606
11
4.8
12
71
17
50
32
16
0
50
1.46
47534--47629
38
2.6
38
91
3
142
29
14
1
55
1.47
48037--48062
2
13.0
2
100
0
52
50
0
0
50
1.00
49648--49940
148
2.0
149
99
0
579
49
14
10
25
1.75
50326--50472
60
2.5
60
82
6
156
35
17
15
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52457--52498
19
2.3
19
87
4
59
40
0
0
59
0.97
53444--53739
141
2.2
132
83
15
348
37
13
13
35
1.84
55220--55309
29
3.1
29
91
0
153
31
5
16
46
1.70
55936--55987
2
26.0
2
86
0
68
46
3
1
48
1.31
56906--56948
20
2.0
20
86
8
59
39
0
25
34
1.56
57114--57272
64
2.5
63
84
6
212
32
19
23
24
1.98
57260--57317
20
2.7
20
84
10
71
29
20
24
25
1.99
58617--58691
2
36.5
2
94
5
132
48
0
2
49
1.15
58679--58738
31
2.0
29
84
12
77
33
0
16
50
1.46
65024--65071
20
2.4
20
92
0
78
12
18
22
45
1.83
65349--65392
6
7.5
6
97
2
81
0
15
52
31
1.44
66632--66730
29
3.3
29
79
5
99
35
10
16
38
1.82
88794--88897
45
2.3
45
100
0
208
33
11
21
33
1.89
89877--89924
21
2.3
21
88
0
69
14
33
22
29
1.94
90468--90677
106
2.0
106
91
1
341
41
10
4
43
1.57
90614--90670
28
2.0
28
89
0
87
49
10
3
36
1.55
94988--95253
81
3.3
80
89
3
401
21
20
25
31
1.98
98360--98396
17
2.2
17
100
0
74
43
18
0
37
1.51
100623--100669
20
2.3
20
100
0
94
17
29
29
23
1.97
100607--100710
43
2.6
40
75
15
90
19
27
30
22
1.98

Tables:   1

The End!