genome.fa.s1529.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001529.1 Hibiscus syriacus cultivar Beakdansim tig00002996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61166

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19--64	18	2.4	18	85	7	56	13	13	26	47	1.78
32--66	18	1.9	18	94	0	61	8	11	22	57	1.61
1904--2030	20	6.7	20	82	10	167	40	22	19	18	1.92
1904--2047	20	7.5	20	81	10	122	40	21	18	19	1.91
2075--2206	20	6.6	20	96	0	228	20	20	20	38	1.94
2689--2730	21	2.2	19	87	12	59	21	35	19	23	1.96
4136--4171	14	2.6	14	90	0	54	30	0	22	47	1.52
4277--4372	33	2.8	33	88	3	129	14	22	20	41	1.89
4344--4428	20	4.2	20	83	3	109	17	21	23	37	1.94
6230--6276	24	2.0	24	95	0	85	34	17	21	27	1.95
6234--6285	24	2.2	24	85	0	68	36	19	19	25	1.95
7133--7178	20	2.3	20	92	7	76	21	19	21	36	1.95
7174--7220	21	2.2	21	80	0	58	38	14	27	19	1.91
9289--9327	16	2.4	16	86	0	51	43	12	20	23	1.86
11548--11603	24	2.3	24	84	6	78	50	12	5	32	1.63
11548--11584	18	2.1	18	89	0	56	51	10	5	32	1.60
14570--14622	21	2.5	20	88	8	79	47	9	15	28	1.76
14365--15022	221	3.1	220	85	6	836	32	14	14	38	1.86
14590--15744	200	5.8	200	90	1	1696	32	14	12	40	1.85
14590--15749	399	2.9	399	89	2	1738	32	14	12	40	1.85
19420--19445	12	2.2	12	100	0	52	38	30	19	11	1.87
20284--20408	31	4.0	32	76	7	121	33	19	17	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25324--25972	183	3.6	183	86	3	868	28	14	13	43	1.84
27536--27593	26	2.2	26	100	0	116	31	6	34	27	1.83
46946--47003	21	2.8	21	78	0	62	50	22	1	25	1.59
46972--47014	21	2.1	20	82	4	50	44	18	2	34	1.63
47085--47138	7	7.7	7	79	6	56	44	33	0	22	1.53
49732--49774	17	2.5	17	88	0	59	27	16	27	27	1.97
50575--50625	14	3.7	14	81	2	68	25	15	17	41	1.89
50575--50646	14	5.3	13	75	14	58	27	15	16	40	1.89
50602--50646	20	2.2	20	80	7	56	31	13	15	40	1.86
51211--51429	52	4.2	51	79	6	217	12	19	19	48	1.80
51224--51429	104	2.0	104	87	1	297	12	18	20	48	1.80
52185--52250	29	2.3	29	91	0	105	33	13	21	31	1.92
55589--55635	3	15.7	3	91	8	78	68	0	2	29	1.02
55653--55718	21	3.1	21	78	10	80	78	0	6	15	0.93
55656--55720	25	2.7	25	77	17	66	80	0	4	15	0.88
55658--55720	19	3.3	19	84	10	67	79	0	4	15	0.90
55986--56020	16	2.2	16	100	0	70	20	42	0	37	1.52
56724--56771	19	2.5	20	93	3	80	45	6	12	35	1.67
56929--56983	22	2.3	25	78	18	80	27	18	23	30	1.97
56937--56990	22	2.5	22	93	0	90	27	18	24	29	1.98
57646--57697	24	2.2	24	82	6	61	44	9	19	26	1.81
58712--58757	9	5.1	9	79	10	58	73	0	4	21	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58712--58766	19	3.0	18	74	10	58	74	0	3	21	0.97
58766--58793	2	14.0	2	100	0	56	50	0	0	50	1.00
58777--59156	34	11.0	35	80	11	353	44	5	4	45	1.48
58807--59157	69	5.1	68	83	9	374	44	6	4	44	1.50
59217--59271	2	29.0	2	85	10	80	50	0	1	47	1.11
59209--59271	23	2.9	22	86	9	85	49	1	1	47	1.20
59859--60523	85	7.9	84	87	2	832	27	17	20	35	1.95

Tables:   1

The End!