Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001530.1 Hibiscus syriacus cultivar Beakdansim tig00002999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78241

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
864--921
10
5.6
10
84
8
71
24
5
1
68
1.19
858--921
21
3.0
21
82
8
76
25
4
1
68
1.17
11198--11260
26
2.4
26
94
0
108
65
9
3
22
1.37
13124--13275
60
2.6
59
79
9
184
29
23
5
41
1.76
13446--13563
60
2.0
61
81
8
143
44
3
16
34
1.65
13637--13666
13
2.3
13
100
0
60
63
16
13
6
1.50
15268--15552
30
9.7
30
71
18
140
36
7
1
55
1.36
15346--15388
21
2.0
21
90
0
68
32
11
2
53
1.50
15269--15445
81
2.1
83
80
6
189
34
10
1
54
1.42
16629--16674
20
2.3
20
85
7
58
45
2
6
45
1.41
18886--19122
117
2.0
117
86
4
327
47
6
15
30
1.70
19550--19587
14
2.6
14
91
4
58
73
5
2
18
1.14
19691--19739
2
24.5
2
95
0
89
51
2
0
46
1.12
19828--19869
18
2.4
18
88
4
59
73
0
2
23
0.94
21137--21174
19
2.0
19
89
0
58
47
0
2
50
1.15
21553--22151
251
2.4
249
86
1
831
26
16
21
35
1.94
23226--23270
13
3.4
13
87
3
63
4
11
2
82
0.91
23227--23271
20
2.3
20
84
3
56
4
13
2
80
0.97
31536--31572
19
1.9
19
94
0
65
18
18
0
62
1.34
45897--46032
57
2.4
55
82
8
166
71
5
9
13
1.29
45934--46028
14
6.6
14
73
12
59
70
6
7
15
1.30
46089--46166
2
39.5
2
97
2
149
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46159--46197
17
2.3
17
91
8
62
76
0
0
23
0.78
46164--46269
24
4.5
22
67
15
61
70
0
5
22
1.14
46218--46245
3
9.3
3
100
0
56
67
0
0
32
0.91
54324--54361
18
2.1
19
85
14
53
31
26
21
21
1.98
55866--55890
5
5.0
5
100
0
50
40
0
0
60
0.97
55754--55953
102
1.9
104
93
3
350
32
2
9
56
1.42
56116--56150
18
1.9
18
88
0
52
25
0
5
68
1.11
63307--63435
54
2.4
54
96
2
233
31
22
17
28
1.96
68789--68870
23
3.6
23
73
17
82
25
26
21
25
2.00
70719--70756
20
1.9
20
94
0
67
31
34
15
18
1.92
70908--71034
54
2.4
54
94
5
224
31
22
17
29
1.96
77816--77955
57
2.5
59
86
11
204
35
18
17
29
1.94

Tables:   1

The End!