Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001531.1 Hibiscus syriacus cultivar Beakdansim tig00003002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 134643
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:374 original size:39 final size:38
Alignment explanation
Indices: 298--396 Score: 105
Period size: 39 Copynumber: 2.6 Consensus size: 38
288 TGCTCTTCCT
* * *
298 CTTTGTGGTGTTCC-TCATCCTTTTTTTTTCTTTTTTTCC
1 CTTTGCGGTGTTCCTTC-TCCTTTCTTCTTCTTTTTTT-C
*
337 CTTTTCGGTGTTCCTTCTCCTTCTCTTCTTC-TTTTTTC
1 CTTTGCGGTGTTCCTTCTCCTT-TCTTCTTCTTTTTTTC
*
375 CTTTGCAGTG-TCCTTCTCCTTT
1 CTTTGCGGTGTTCCTTCTCCTTT
397 ACCCTCTTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
36 1 0.02
37 11 0.21
38 9 0.17
39 23 0.44
40 8 0.15
ACGTcount: A:0.02, C:0.28, G:0.10, T:0.60
Consensus pattern (38 bp):
CTTTGCGGTGTTCCTTCTCCTTTCTTCTTCTTTTTTTC
Found at i:389 original size:37 final size:37
Alignment explanation
Indices: 325--395 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
315 TCCTTTTTTT
* *
325 TTCTTTTTTTCCCTTTTCGGTGTTCCTTCTCCTTCTC
1 TTCTTTTTTTCCCTTTGCAGTGTTCCTTCTCCTTCTC
*
362 TTCTTCTTTTTTCCTTTGCAGTG-TCCTTCTCCTT
1 TTCTT-TTTTTCCCTTTGCAGTGTTCCTTCTCCTT
396 TACCCTCTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
37 16 0.53
38 14 0.47
ACGTcount: A:0.01, C:0.31, G:0.08, T:0.59
Consensus pattern (37 bp):
TTCTTTTTTTCCCTTTGCAGTGTTCCTTCTCCTTCTC
Found at i:408 original size:50 final size:51
Alignment explanation
Indices: 354--459 Score: 132
Period size: 51 Copynumber: 2.1 Consensus size: 51
344 GTGTTCCTTC
354 TCCTTCTC-TTCTTCTTTTTTCC-T-TTGCAGTGT-CCTTCTCCTTTAC-CCTCT
1 TCCTTCTCTTTC-T-TTTTTTCCGTCTT-CAGTGTCCCTTCTCCTTT-CTCCTCT
*
404 TCCTTTTCTTTCTTTTTTTCCGTCTTCAGTGTCCCTTCTCCTTTCTCCTCT
1 TCCTTCTCTTTCTTTTTTTCCGTCTTCAGTGTCCCTTCTCCTTTCTCCTCT
455 TCCTT
1 TCCTT
460 TTCAACAAGT
Statistics
Matches: 50, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
49 8 0.16
50 16 0.32
51 26 0.52
ACGTcount: A:0.03, C:0.36, G:0.06, T:0.56
Consensus pattern (51 bp):
TCCTTCTCTTTCTTTTTTTCCGTCTTCAGTGTCCCTTCTCCTTTCTCCTCT
Found at i:6153 original size:23 final size:23
Alignment explanation
Indices: 6127--6176 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
6117 AATACCCAAG
*
6127 ATAAA-CATAAATCTACCATTAAA
1 ATAAAGCATAAA-CAACCATTAAA
**
6150 ATAAAGTTTAAACAACCATTAAA
1 ATAAAGCATAAACAACCATTAAA
6173 ATAA
1 ATAA
6177 CCCCACCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26
Consensus pattern (23 bp):
ATAAAGCATAAACAACCATTAAA
Found at i:9420 original size:27 final size:26
Alignment explanation
Indices: 9379--9440 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 26
9369 ATGAAGAAAT
9379 AAGAGAGAAAAAAAAAGTTAAAAATGA
1 AAGAGA-AAAAAAAAAGTTAAAAATGA
9406 AAGAGAAAAAGAAAAAGTTAAAAATGA
1 AAGAGAAAAA-AAAAAGTTAAAAATGA
*
9433 GAGAGAAA
1 AAGAGAAA
9441 TGGGTGATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
26 4 0.12
27 29 0.88
ACGTcount: A:0.69, C:0.00, G:0.21, T:0.10
Consensus pattern (26 bp):
AAGAGAAAAAAAAAAGTTAAAAATGA
Found at i:18444 original size:9 final size:9
Alignment explanation
Indices: 18413--18604 Score: 81
Period size: 9 Copynumber: 21.4 Consensus size: 9
18403 CATAAAAAAT
18413 AAAAAGAGAG
1 AAAAAGA-AG
18423 AGAAAAGATAG
1 A-AAAAGA-AG
18434 AAAAAGAAG
1 AAAAAGAAG
*
18443 --AAGGAA-
1 AAAAAGAAG
18449 AAAATAGAA-
1 AAAA-AGAAG
18458 AAAATAGAA-
1 AAAA-AGAAG
18467 AAAGAA-AAG
1 AAA-AAGAAG
*
18476 AGAAAATATAG
1 A-AAAAGA-AG
18487 AAAAAGAAG
1 AAAAAGAAG
*
18496 AAGAATAAAAAG
1 -A-AA-AAGAAG
18508 AAAAA-AAG
1 AAAAAGAAG
18516 AAAAA-AAG
1 AAAAAGAAG
18524 AAAAA-AAG
1 AAAAAGAAG
18532 AAAAA-AAG
1 AAAAAGAAG
*
18540 AAAAAGAAT
1 AAAAAGAAG
* *
18549 AAGAATAAG
1 AAAAAGAAG
*
18558 AATAAGAA-
1 AAAAAGAAG
*
18566 TAAAA-AAG
1 AAAAAGAAG
18574 -AAAA-AAG
1 AAAAAGAAG
18581 AAAAA-AGAG
1 AAAAAGA-AG
18590 AAAAGAGAAAG
1 AAAA-AG-AAG
18601 AAAA
1 AAAA
18605 TAAATCAAGT
Statistics
Matches: 150, Mismatches: 13, Indels: 37
0.75 0.06 0.19
Matches are distributed among these distances:
7 14 0.09
8 44 0.29
9 45 0.30
10 20 0.13
11 21 0.14
12 6 0.04
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (9 bp):
AAAAAGAAG
Found at i:18458 original size:31 final size:30
Alignment explanation
Indices: 18423--18528 Score: 110
Period size: 31 Copynumber: 3.5 Consensus size: 30
18413 AAAAAGAGAG
18423 AGAAAAGATAGAAAAAGAAGAAGGAAAAAAT
1 AGAAAAGATAGAAAAAGAA-AAGGAAAAAAT
* *
18454 AGAAAAAATAGAAAAAGAAAAGAGAAAATAT
1 AGAAAAGATAGAAAAAGAAAAG-GAAAAAAT
* * *
18485 AGAAAAAGA-AGAAGAATAAAAAGAAAAAA-
1 AG-AAAAGATAGAAAAAGAAAAGGAAAAAAT
*
18514 AGAAAA-AAAGAAAAA
1 AGAAAAGATAGAAAAA
18529 AAGAAAAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
27 1 0.02
28 10 0.16
29 2 0.03
30 9 0.14
31 37 0.58
32 5 0.08
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (30 bp):
AGAAAAGATAGAAAAAGAAAAGGAAAAAAT
Found at i:18466 original size:22 final size:21
Alignment explanation
Indices: 18413--18530 Score: 67
Period size: 22 Copynumber: 5.8 Consensus size: 21
18403 CATAAAAAAT
* *
18413 AAAAAGAGAGAGAAAAGATAGA
1 AAAAATAGA-AGAAAAAATAGA
18435 AAAAGA-AGAAGGAAAAAATAGA
1 AAAA-ATAGAA-GAAAAAATAGA
18457 AAAAATAGAA-AAAGAAA-AGA
1 AAAAATAGAAGAAA-AAATAGA
* *
18477 GAAAATA-TAGAAAAAGA-AGA
1 AAAAATAGAAGAAAAA-ATAGA
18497 AGAATAA-A-AAGAAAAAA-AGA
1 A-AA-AATAGAAGAAAAAATAGA
18517 AAAAA-AGAA-AAAAA
1 AAAAATAGAAGAAAAA
18531 GAAAAAAAGA
Statistics
Matches: 82, Mismatches: 5, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
18 8 0.10
19 7 0.09
20 24 0.29
21 15 0.18
22 27 0.33
23 1 0.01
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (21 bp):
AAAAATAGAAGAAAAAATAGA
Found at i:18468 original size:8 final size:8
Alignment explanation
Indices: 18406--18593 Score: 100
Period size: 8 Copynumber: 22.4 Consensus size: 8
18396 ATAAATTCAT
*
18406 AAAAAATA
1 AAAAAAGA
*
18414 AAAAGAGA
1 AAAAAAGA
*
18422 GAGAAAAGA
1 -AAAAAAGA
18431 TAGAAAAAG-
1 -A-AAAAAGA
* *
18440 AAGAAGGA
1 AAAAAAGA
18448 AAAAATAGA
1 AAAAA-AGA
18457 AAAAATAG-
1 AAAAA-AGA
18465 -AAAAAG-
1 AAAAAAGA
*
18471 AAAAGAGA
1 AAAAAAGA
*
18479 AAATATAGAA
1 AAA-AAAG-A
18489 AAAGAAGAAGA
1 AAA-AA--AGA
18500 ATAAAAAGA
1 A-AAAAAGA
18509 AAAAAAGA
1 AAAAAAGA
18517 AAAAAAGA
1 AAAAAAGA
18525 AAAAAAGA
1 AAAAAAGA
18533 AAAAAAGA
1 AAAAAAGA
*
18541 AAAAGAATA
1 AAAA-AAGA
*
18550 AGAATAAGA
1 A-AAAAAGA
* *
18559 ATAAGAA-T
1 A-AAAAAGA
18567 AAAAAAG-
1 AAAAAAGA
18574 AAAAAAGA
1 AAAAAAGA
18582 AAAAAGAGA
1 AAAAA-AGA
18591 AAA
1 AAA
18594 GAGAAAGAAA
Statistics
Matches: 143, Mismatches: 21, Indels: 31
0.73 0.11 0.16
Matches are distributed among these distances:
6 2 0.01
7 24 0.17
8 55 0.38
9 42 0.29
10 12 0.08
11 4 0.03
12 4 0.03
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (8 bp):
AAAAAAGA
Found at i:18474 original size:6 final size:6
Alignment explanation
Indices: 18432--18604 Score: 85
Period size: 6 Copynumber: 29.0 Consensus size: 6
18422 GAGAAAAGAT
* *
18432 AGAAAA AGAAGAA GGAAAA A-ATAGAA A-AAAT AGAAAA AGAAAA GAGAAAA
1 AGAAAA AGAA-AA AGAAAA AGA-A-AA AGAAAA AGAAAA AGAAAA -AGAAAA
* * * * * *
18482 TATAGAA A-AAGA AGAAGA ATAAAA AGAAAA A-AAGA A-AAAA AGAAAA
1 -AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
* * * * *
18528 A-AAGA A-AAAA AGAAAA AGAATA AGAATA AGAATA AG-AAT A-AAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
*
18572 AGAAAAA AGAAAAA AGAGAAA AGAGAA AGAAAA
1 AG-AAAA AG-AAAA AGA-AAA AGAAAA AGAAAA
18605 TAAATCAAGT
Statistics
Matches: 133, Mismatches: 22, Indels: 24
0.74 0.12 0.13
Matches are distributed among these distances:
5 27 0.20
6 68 0.51
7 38 0.29
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.05
Consensus pattern (6 bp):
AGAAAA
Found at i:18487 original size:53 final size:54
Alignment explanation
Indices: 18421--18593 Score: 203
Period size: 53 Copynumber: 3.1 Consensus size: 54
18411 ATAAAAAGAG
18421 AGAGAAAAGATAGAAAAAGAAGAAGGAA-AAAATAGAAAAAATAG-AAAAAG-AAA
1 AGAGAAAA-ATAGAAAAAGAAGAA-GAATAAAATAGAAAAAATAGAAAAAAGAAAA
18474 AGAGAAAATATAGAAAAAGAAGAAGAATAAAA-AGAAAAAA-AGAAAAAAAGAAAA
1 AGAGAAAA-ATAGAAAAAGAAGAAGAATAAAATAGAAAAAATAG-AAAAAAGAAAA
* * * *
18528 AAAGAAAAAAAGAAAAAGAATAAGAATAAGAATAAGAATAAAAAAGAAAAAAGAAAAA
1 AGAGAAAAATAGAAAAAGAAGAAGAATAA-AAT-AGAA-AAAATAGAAAAAAG-AAAA
18586 AGAGAAAA
1 AGAGAAAA
18594 GAGAAAGAAA
Statistics
Matches: 105, Mismatches: 5, Indels: 15
0.84 0.04 0.12
Matches are distributed among these distances:
51 2 0.02
52 11 0.10
53 52 0.50
54 12 0.11
56 4 0.04
57 11 0.10
58 13 0.12
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (54 bp):
AGAGAAAAATAGAAAAAGAAGAAGAATAAAATAGAAAAAATAGAAAAAAGAAAA
Found at i:18599 original size:65 final size:67
Alignment explanation
Indices: 18434--18604 Score: 197
Period size: 65 Copynumber: 2.5 Consensus size: 67
18424 GAAAAGATAG
* * * *
18434 AAAAAGAAGAAGGAAAAAATAGAAAAAATAGAAAAAGAAAAGAGAAAATATAGAAAAAGAAGAAG
1 AAAAAGAAAAAAGAAAAAA-AGAAAAAAGAAAAAAAGAAAAGAG-AAATATAGAAAAAGAAGAAG
18499 AAT-
64 AATA
* *
18502 AAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAA-AG-AATA-AGAATAAGAATAAG
1 AAAAAG-AAAAAAGAAAAAAAG-AAAAAAGAAAAAAAGAAAAGAGAAATATAGAAAAAGAAGAAG
18564 AATA
64 AATA
*
18568 AAAAAGAAAAAAGAAAAAAGAGAAAAGAGAAAGAAAA
1 AAAAAGAAAAAAGAAAAAA-AGAAAAAAGAAA-AAAA
18605 TAAATCAAGT
Statistics
Matches: 91, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
65 37 0.41
66 16 0.18
68 10 0.11
69 28 0.31
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (67 bp):
AAAAAGAAAAAAGAAAAAAAGAAAAAAGAAAAAAAGAAAAGAGAAATATAGAAAAAGAAGAAGAA
TA
Found at i:19825 original size:44 final size:44
Alignment explanation
Indices: 19700--19908 Score: 242
Period size: 44 Copynumber: 4.8 Consensus size: 44
19690 AGAACTGATG
* * * * *
19700 AATGTTGGGGCACTTTTAAAGGCTCGTATCATCCAGAAATAATA
1 AATGTTGGGACATTTTTGAAGGCTCATATCATCAAGAAATAATA
* * *
19744 AATGTTAGGG-CA-TTTTGAAGACCCATATCAGCAAGAAATAATA
1 AATGTT-GGGACATTTTTGAAGGCTCATATCATCAAGAAATAATA
* *
19787 AATGTTGGGACATTTTTGAAGGCTCGTATCATCTAGAAATAATA
1 AATGTTGGGACATTTTTGAAGGCTCATATCATCAAGAAATAATA
** * * *
19831 AATGTTGGGGGATTTTTGAAGGCCCATATCAGCAAGAACTAATA
1 AATGTTGGGACATTTTTGAAGGCTCATATCATCAAGAAATAATA
*
19875 AATGTTGGGACATTTTTTGAAGGCTTATATCATC
1 AATGTTGGGACA-TTTTTGAAGGCTCATATCATC
19909 CACGAATACA
Statistics
Matches: 138, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
42 3 0.02
43 33 0.24
44 81 0.59
45 21 0.15
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (44 bp):
AATGTTGGGACATTTTTGAAGGCTCATATCATCAAGAAATAATA
Found at i:19832 original size:87 final size:88
Alignment explanation
Indices: 19686--19910 Score: 326
Period size: 87 Copynumber: 2.6 Consensus size: 88
19676 TCAGTGCTGG
* * * * *
19686 AGCAAGAACTGATGAATGTTGGGGCACTTTTAAAGGCTCGTATCATCCAGAAATAATAAATGTTA
1 AGCAAGAACTAATAAATGTTGGGACATTTTTGAAGGCTCGTATCATCCAGAAATAATAAATGTTA
19751 GGGCA-TTTTGAAGACCCATATC
66 GGGCATTTTTGAAGACCCATATC
* * *
19773 AGCAAGAAATAATAAATGTTGGGACATTTTTGAAGGCTCGTATCATCTAGAAATAATAAATGTTG
1 AGCAAGAACTAATAAATGTTGGGACATTTTTGAAGGCTCGTATCATCCAGAAATAATAAATGTTA
* *
19838 GGGGATTTTTGAAGGCCCATATC
66 GGGCATTTTTGAAGACCCATATC
**
19861 AGCAAGAACTAATAAATGTTGGGACATTTTTTGAAGGCTTATATCATCCA
1 AGCAAGAACTAATAAATGTTGGGACA-TTTTTGAAGGCTCGTATCATCCA
19911 CGAATACAAT
Statistics
Matches: 122, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
87 61 0.50
88 41 0.34
89 20 0.16
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (88 bp):
AGCAAGAACTAATAAATGTTGGGACATTTTTGAAGGCTCGTATCATCCAGAAATAATAAATGTTA
GGGCATTTTTGAAGACCCATATC
Found at i:22252 original size:137 final size:136
Alignment explanation
Indices: 21966--22384 Score: 409
Period size: 137 Copynumber: 3.1 Consensus size: 136
21956 GCAAATCAAA
* * * *
21966 CTCGATTCAATATTCCCTAAGT-AACAGTGGAATAAATCAACGTCCCCAAATCTGATTTTCCCTT
1 CTCGATTCAATTTTCCCT-AGTAAACAGTGGAATGAATCAACATCCCCAAATCTGATTTTCCCTC
* * * * * * * * ** *
22030 AG--GATA-AAGTGAAATAGATCCATCTCTTT-CAGTTTTCATATTCCCTAAGTAACAGCAGAAC
65 AGAAGA-AGAAGCGGAATATATCCCTCTCTTTCCAGATTTGATATTCTCTGAGTAACAGTGGAAA
22091 AAGTCTAC
129 AAGTCTAC
* * * * *
22099 CTCGATTCAATCTTCCCTGAGTAAAAAG-GGAATGAATCAACATCTCTATATCTGATTTTCCCTC
1 CTCGATTCAATTTTCCCT-AGTAAACAGTGGAATGAATCAACATCCCCAAATCTGATTTTCCCTC
22163 AAGAAGAAGAAGCGGAATATATCCCTCTCTTTCCAGATTTGATATTCTCTGAGTAACAGTGGAAA
65 -AGAAGAAGAAGCGGAATATATCCCTCTCTTTCCAGATTTGATATTCTCTGAGTAACAGTGGAAA
22228 AAGTCTAC
129 AAGTCTAC
* *
22236 CTCGATTCAATTTTCCCTAG-AGAACAGTGGAATGAATCAA-AGTCCCCAGATCTGACTTTCCCT
1 CTCGATTCAATTTTCCCTAGTA-AACAGTGGAATGAATCAACA-TCCCCAAATCTGATTTTCCCT
* * *
22299 C--AAGAAGAAGCAGAACATAT--CTCTCTTTCAAGATTTGATATTCAT-TGAGTGAA-AGTGGA
64 CAGAAGAAGAAGCGGAATATATCCCTCTCTTTCCAGATTTGATATTC-TCTGAGT-AACAGTGGA
22358 ACAAA-TCTAC
127 A-AAAGTCTAC
*
22368 CTTGATTCAATCTTTCC
1 CTCGATTCAAT-TTTCC
22385 TAAAGAATAG
Statistics
Matches: 243, Mismatches: 30, Indels: 26
0.81 0.10 0.09
Matches are distributed among these distances:
132 49 0.20
133 61 0.25
134 23 0.09
135 2 0.01
136 28 0.12
137 80 0.33
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (136 bp):
CTCGATTCAATTTTCCCTAGTAAACAGTGGAATGAATCAACATCCCCAAATCTGATTTTCCCTCA
GAAGAAGAAGCGGAATATATCCCTCTCTTTCCAGATTTGATATTCTCTGAGTAACAGTGGAAAAA
GTCTAC
Found at i:22587 original size:3 final size:3
Alignment explanation
Indices: 22579--22603 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
22569 GTCCAGACCG
22579 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
22604 ATTTTAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:22872 original size:12 final size:12
Alignment explanation
Indices: 22855--22894 Score: 80
Period size: 12 Copynumber: 3.3 Consensus size: 12
22845 CCCGTTCACT
22855 ATGCCTTGCGCC
1 ATGCCTTGCGCC
22867 ATGCCTTGCGCC
1 ATGCCTTGCGCC
22879 ATGCCTTGCGCC
1 ATGCCTTGCGCC
22891 ATGC
1 ATGC
22895 TCCTTACCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.10, C:0.40, G:0.25, T:0.25
Consensus pattern (12 bp):
ATGCCTTGCGCC
Found at i:23888 original size:2 final size:2
Alignment explanation
Indices: 23881--23908 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23871 TTTCTTAAGG
23881 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23909 CACATGTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25035 original size:16 final size:18
Alignment explanation
Indices: 25000--25037 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
24990 AGATATATTC
25000 TATGTGAAATATTATAAA
1 TATGTGAAATATTATAAA
*
25018 TATGTG-AATA-TGTAAA
1 TATGTGAAATATTATAAA
25034 TATG
1 TATG
25038 AAATAATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 9 0.47
17 4 0.21
18 6 0.32
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (18 bp):
TATGTGAAATATTATAAA
Found at i:25450 original size:23 final size:23
Alignment explanation
Indices: 25420--25468 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
25410 AGTCGAGGGT
25420 TCTATGTGGTCCTTCGGGACAAA
1 TCTATGTGGTCCTTCGGGACAAA
25443 TCTATGTGGTCCTTCGGGACAAA
1 TCTATGTGGTCCTTCGGGACAAA
25466 TCT
1 TCT
25469 GTGGCAGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (23 bp):
TCTATGTGGTCCTTCGGGACAAA
Found at i:26895 original size:15 final size:15
Alignment explanation
Indices: 26875--26904 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26865 ATTTTTTATC
*
26875 TCTTAAAATTATTTT
1 TCTTAAAAATATTTT
26890 TCTTAAAAATATTTT
1 TCTTAAAAATATTTT
26905 AAAATATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (15 bp):
TCTTAAAAATATTTT
Found at i:29774 original size:21 final size:21
Alignment explanation
Indices: 29726--29775 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
29716 ATGACTATCA
29726 CAATGCGATTTTCCAATTTCG
1 CAATGCGATTTTCCAATTTCG
**
29747 CGTTGCGATTTTCCCAA-TTCG
1 CAATGCGATTTT-CCAATTTCG
29768 CAATGCGA
1 CAATGCGA
29776 ATAAGTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (21 bp):
CAATGCGATTTTCCAATTTCG
Found at i:29790 original size:20 final size:21
Alignment explanation
Indices: 29765--29816 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
29755 TTTTCCCAAT
*
29765 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
29785 TCGCAATACGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
29806 TCGCAATGCGA
1 TCGCAATGCGA
29817 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:29830 original size:20 final size:19
Alignment explanation
Indices: 29805--29919 Score: 77
Period size: 20 Copynumber: 5.7 Consensus size: 19
29795 AATTTGGAAA
*
29805 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACT-ACT
* *
29825 ATCGCAACGCGATAATACAAA
1 ATCGCAACGCGATACTAC--T
29846 ATCGCAACGCGATACTAACT
1 ATCGCAACGCGATACT-ACT
* **
29866 TTCGCAACTAGATACTGACT
1 ATCGCAACGCGATACT-ACT
* * *
29886 TTCGCAACGAGATAATACAT
1 ATCGCAACGCGATACTAC-T
*
29906 AATCGCAATGCGAT
1 -ATCGCAACGCGAT
29920 TTTCAAAGCG
Statistics
Matches: 76, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
19 4 0.05
20 45 0.59
21 25 0.33
22 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (19 bp):
ATCGCAACGCGATACTACT
Found at i:30114 original size:22 final size:22
Alignment explanation
Indices: 30086--30129 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
30076 CACTCTCTCA
30086 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
30108 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
30130 TATCTCCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.45, G:0.14, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:30441 original size:20 final size:20
Alignment explanation
Indices: 30392--30450 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
30382 TTTATTCTCT
* **
30392 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTGTCATTTTCG
30412 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCATTTTCG
* *
30432 TGTTGCGATTTTCATTTTC
1 CGTTGCGATTGTCATTTTC
30451 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTGTCATTTTCG
Found at i:30641 original size:25 final size:24
Alignment explanation
Indices: 30587--30641 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
30577 TGTTTATTAT
* *
30587 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
30611 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
30637 TGTTT
1 TGTTT
30642 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:31791 original size:18 final size:18
Alignment explanation
Indices: 31770--31835 Score: 105
Period size: 18 Copynumber: 3.7 Consensus size: 18
31760 TCCACTTTGG
31770 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
* *
31788 GAGCTATCACCTTACCCA
1 GAGCCATCACCTCACCCA
*
31806 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
31824 GAGCCATCACCT
1 GAGCCATCACCT
31836 GATCGACCCG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.27, C:0.44, G:0.12, T:0.17
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:33808 original size:39 final size:38
Alignment explanation
Indices: 33765--33838 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 38
33755 TCTTTTGGTT
33765 GAAATGAAAATCGCAACGA-GAGAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAAC-ACGA-AATGAAAATCGCAACGC
33804 GAAATGAAAATCGCAACACGAAATGAAAATCGCAA
1 GAAATGAAAATCGCAACACGAAATGAAAATCGCAA
33839 TGCGGTTTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
38 15 0.44
39 19 0.56
ACGTcount: A:0.51, C:0.18, G:0.20, T:0.11
Consensus pattern (38 bp):
GAAATGAAAATCGCAACACGAAATGAAAATCGCAACGC
Found at i:33811 original size:19 final size:19
Alignment explanation
Indices: 33765--33838 Score: 121
Period size: 19 Copynumber: 3.8 Consensus size: 19
33755 TCTTTTGGTT
*
33765 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
33784 GAGAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
*
33804 GAAATGAAAATCGCAACAC
1 GAAATGAAAATCGCAACGC
33823 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
33839 TGCGGTTTTG
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
19 34 0.65
20 18 0.35
ACGTcount: A:0.51, C:0.18, G:0.20, T:0.11
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:33874 original size:14 final size:14
Alignment explanation
Indices: 33855--33911 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
33845 TTTGGTTTCG
33855 CGTTGCGATTATCT
1 CGTTGCGATTATCT
*
33869 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TT-A--TCT
33888 CGTTGCGATTATCT
1 CGTTGCGATTATCT
33902 CGTTGCGATT
1 CGTTGCGATT
33912 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.12, C:0.21, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTATCT
Found at i:33892 original size:33 final size:33
Alignment explanation
Indices: 33850--33930 Score: 162
Period size: 33 Copynumber: 2.5 Consensus size: 33
33840 GCGGTTTTGG
33850 TTTCGCGTTGCGATTATCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTATCTCGTTGCGATTTTCA
33883 TTTCGCGTTGCGATTATCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTATCTCGTTGCGATTTTCA
33916 TTTCGCGTTGCGATT
1 TTTCGCGTTGCGATT
33931 TTCATTTCCG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.11, C:0.21, G:0.22, T:0.46
Consensus pattern (33 bp):
TTTCGCGTTGCGATTATCTCGTTGCGATTTTCA
Found at i:33893 original size:19 final size:19
Alignment explanation
Indices: 33869--33956 Score: 123
Period size: 19 Copynumber: 4.8 Consensus size: 19
33859 GCGATTATCT
33869 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
33888 CGTTGCGA--TT-A--TCT
1 CGTTGCGATTTTCATTTCG
33902 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
33921 CGTTGCGATTTTCATTTCCG
1 CGTTGCGATTTTCATTT-CG
33941 CGTTGCGATTTTCATT
1 CGTTGCGATTTTCATT
33957 CTCGAAATTA
Statistics
Matches: 61, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
14 10 0.16
16 3 0.05
17 3 0.05
19 27 0.44
20 18 0.30
ACGTcount: A:0.11, C:0.22, G:0.20, T:0.47
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:34524 original size:20 final size:20
Alignment explanation
Indices: 34501--34574 Score: 112
Period size: 20 Copynumber: 3.6 Consensus size: 20
34491 CGATAGTCAG
34501 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* * *
34521 ATTCGTATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGT
34541 AATTCGCATTGCGATTTACGT
1 -ATTCGCATTGCGATTTACGT
34562 ATTCGCATTGCGA
1 ATTCGCATTGCGA
34575 ATTGGGAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 30 0.64
21 17 0.36
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:34589 original size:41 final size:40
Alignment explanation
Indices: 34503--34639 Score: 112
Period size: 41 Copynumber: 3.3 Consensus size: 40
34493 ATAGTCAGAT
* * *** *
34503 TCGCATTGCGATTTACGTATTCGTATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTATTCGCATTGCGA-ATTGGAAAA
34544 TCGCATTGCGATTTACGTATTCGCATTGCGAATTGGGAAAA
1 TCGCATTGCGATTTACGTATTCGCATTGCGAATT-GGAAAA
* * ** * * *
34585 TCGCAATGTGAATTTGGGAAAATCGCAATGCGAAATTGGAAAA
1 TCGCATTGCG-ATTTACG-TATTCGCATTGCG-AATTGGAAAA
34628 TCGCATTGCGAT
1 TCGCATTGCGAT
34640 AGTAATAATC
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
40 2 0.03
41 40 0.52
42 7 0.09
43 24 0.31
44 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (40 bp):
TCGCATTGCGATTTACGTATTCGCATTGCGAATTGGAAAA
Found at i:34604 original size:22 final size:22
Alignment explanation
Indices: 34564--34638 Score: 100
Period size: 21 Copynumber: 3.5 Consensus size: 22
34554 ATTTACGTAT
*
34564 TCGCATTGCG-AATTGGGAAAA
1 TCGCAATGCGAAATTGGGAAAA
* *
34585 TCGCAATGTGAATTTGGGAAAA
1 TCGCAATGCGAAATTGGGAAAA
34607 TCGCAATGCGAAATT-GGAAAA
1 TCGCAATGCGAAATTGGGAAAA
*
34628 TCGCATTGCGA
1 TCGCAATGCGA
34639 TAGTAATAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 24 0.51
22 23 0.49
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.24
Consensus pattern (22 bp):
TCGCAATGCGAAATTGGGAAAA
Found at i:35131 original size:22 final size:22
Alignment explanation
Indices: 35101--35142 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
35091 ACTATAGGTA
35101 AAATCTAACCAAAATAATTAAG
1 AAATCTAACCAAAATAATTAAG
* * *
35123 AAATTTAACCATATTAATTA
1 AAATCTAACCAAAATAATTA
35143 TCAAAAGAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (22 bp):
AAATCTAACCAAAATAATTAAG
Found at i:35935 original size:17 final size:17
Alignment explanation
Indices: 35896--35937 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
35886 GGTTTATGTC
35896 TAAATTTTAAGTTTTAT
1 TAAATTTTAAGTTTTAT
* *
35913 TTAATTTTAAATTTT-T
1 TAAATTTTAAGTTTTAT
35929 ATAAATTTT
1 -TAAATTTT
35938 GAATATTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 1 0.05
17 20 0.95
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (17 bp):
TAAATTTTAAGTTTTAT
Found at i:38464 original size:29 final size:30
Alignment explanation
Indices: 38390--38475 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
38380 TCTATTTAAA
* *
38390 TATTTAAAATATTTTTTTTATCGAAATAAG
1 TATTTAAAATATTTTTTTTGTCAAAATAAG
* * *
38420 TA-TTAAAGTTATTTTTTTGGTCAAAATAGG
1 TATTTAAA-ATATTTTTTTTGTCAAAATAAG
38450 TATTTAAAATA-TTTTTTTGTCAAAAT
1 TATTTAAAATATTTTTTTTGTCAAAAT
38476 GTGTACCTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
29 19 0.40
30 23 0.49
31 5 0.11
ACGTcount: A:0.37, C:0.03, G:0.09, T:0.50
Consensus pattern (30 bp):
TATTTAAAATATTTTTTTTGTCAAAATAAG
Found at i:38486 original size:29 final size:30
Alignment explanation
Indices: 38394--38491 Score: 76
Period size: 30 Copynumber: 3.3 Consensus size: 30
38384 TTTAAATATT
** * * *
38394 TAAAATATTTTTTTTATCGAAATAAGTA-T
1 TAAAATATTTTTTTGGTCAAAATAGGTACC
* **
38423 TAAAGTTATTTTTTTGGTCAAAATAGGTATT
1 TAAA-ATATTTTTTTGGTCAAAATAGGTACC
38454 TAAAATATTTTTTT-GTCAAAAT-GTGTACC
1 TAAAATATTTTTTTGGTCAAAATAG-GTACC
*
38483 TAAATTATT
1 TAAAATATT
38492 AAATTCATTT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
28 1 0.02
29 23 0.40
30 28 0.49
31 5 0.09
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.48
Consensus pattern (30 bp):
TAAAATATTTTTTTGGTCAAAATAGGTACC
Found at i:39137 original size:30 final size:29
Alignment explanation
Indices: 39090--39147 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
39080 AGTATAATTT
39090 TAAAAAATAATAAAATTTAAACATTAAAA
1 TAAAAAATAATAAAATTTAAACATTAAAA
*
39119 TAAACAAAT-ATAATAATTTAAATATTAAA
1 TAAA-AAATAATAA-AATTTAAACATTAAA
39148 CGTATAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (29 bp):
TAAAAAATAATAAAATTTAAACATTAAAA
Found at i:44435 original size:15 final size:16
Alignment explanation
Indices: 44409--44450 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
44399 ATTTAGTCAC
44409 TAAATTTATTTAATAAA
1 TAAA-TTATTTAATAAA
* *
44426 TAAA-TATTTATTACA
1 TAAATTATTTAATAAA
44441 TAAATTATTT
1 TAAATTATTT
44451 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 13 0.59
16 5 0.23
17 4 0.18
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
TAAATTATTTAATAAA
Found at i:45742 original size:12 final size:12
Alignment explanation
Indices: 45725--45749 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45715 CAAACAGAAG
45725 GGGAGAGAGAGA
1 GGGAGAGAGAGA
45737 GGGAGAGAGAGA
1 GGGAGAGAGAGA
45749 G
1 G
45750 AGAATTCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (12 bp):
GGGAGAGAGAGA
Found at i:58320 original size:25 final size:25
Alignment explanation
Indices: 58286--58354 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 25
58276 ATCCCCGCGG
58286 TTTTTTAAACGGGGACGGGTACCAA
1 TTTTTTAAACGGGGACGGGTACCAA
* *
58311 TTTTTTAAACGGGGATGGATACCAA
1 TTTTTTAAACGGGGACGGGTACCAA
58336 TTTTTTAAACGGGGACGGG
1 TTTTTTAAACGGGGACGGG
58355 AAGACCAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (25 bp):
TTTTTTAAACGGGGACGGGTACCAA
Found at i:58411 original size:13 final size:13
Alignment explanation
Indices: 58393--58427 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
58383 CGTTGCCATC
58393 CCTAATTCTAACA
1 CCTAATTCTAACA
58406 CCTAATTCTAACA
1 CCTAATTCTAACA
58419 CCTCAATTC
1 CCT-AATTC
58428 CTCTTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (13 bp):
CCTAATTCTAACA
Found at i:72237 original size:16 final size:16
Alignment explanation
Indices: 72218--72251 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
72208 AAAAAAAAGG
72218 AATGAAAAA-AATGAAA
1 AATGAAAAAGAA-GAAA
72234 AATGAAAAAGAAGAAA
1 AATGAAAAAGAAGAAA
72250 AA
1 AA
72252 ATAAATAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (16 bp):
AATGAAAAAGAAGAAA
Found at i:73335 original size:40 final size:41
Alignment explanation
Indices: 73291--73378 Score: 106
Period size: 43 Copynumber: 2.1 Consensus size: 41
73281 ACGCATGAGT
* * **
73291 CGTGTCATCCTTCG-ACCAGATTTCCTCATCACGTAGGAAC
1 CGTGTCACCCTTAGAACCAGACGTCCTCATCACGTAGGAAC
*
73331 CGTGTCACCCTTAGATAACCAGCCGTCCTCATCACGTAGGAAC
1 CGTGTCACCCTTAG--AACCAGACGTCCTCATCACGTAGGAAC
73374 CGTGT
1 CGTGT
73379 TATCACCTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
40 12 0.30
43 28 0.70
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.25
Consensus pattern (41 bp):
CGTGTCACCCTTAGAACCAGACGTCCTCATCACGTAGGAAC
Found at i:73464 original size:130 final size:132
Alignment explanation
Indices: 73167--73555 Score: 417
Period size: 130 Copynumber: 2.9 Consensus size: 132
73157 TCAACATCAG
*** * * *
73167 CTGACCAGATCTCCTCATCACGTAGGAGCAACGTCAACATTAGATAACCAGCCATCCTCATCGCG
1 CTGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCTTAGATAACCAGCCGTCCTCATCACG
**
73232 TAGGAACCAAGTTATCACCCTTCCTAAAGATGGCCAAGAACTCTTCATCACGCATGAGTCGTGTC
66 TAGGAACCAAGTTATCACCCTT-CT-AAGATGGCCAAGAACTCTTCATCACGCATGAGTAATGTC
73297 ATCC
129 ATCC
* * * *
73301 TTCGACCAGATTTCCTCATCACGTAGGAACCGTGTCACCCTTAGATAACCAGCCGTCCTCATCAC
1 CT-GACCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCTTAGATAACCAGCCGTCCTCATCAC
** * *
73366 GTAGGAACCGTGTTATCA-CCTT-T-AGATGGCCAAGAACTCTTCATCATGTATGAGTAATGTCA
65 GTAGGAACCAAGTTATCACCCTTCTAAGATGGCCAAGAACTCTTCATCACGCATGAGTAATGTCA
73428 TCCC
130 T-CC
* * * * * * *
73432 CTGACCAGAACTCTTCATCACGTATGAGCCGTGTCAACCTCAGATAACCAGCCGTCCCCAGCAGA
1 CTGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCTTAGATAACCAGCCGTCCTCATCA-C
* * * * * *
73497 GT-GGAACCATGTTATCATCTTTCCTAAAGATGGCCAAGATTCTCTTCATCGCGGATGAG
65 GTAGGAACCAAGTTATCACCCTT-CT-AAGATGGCCAAGA-ACTCTTCATCACGCATGAG
73556 CAGTGTCGTC
Statistics
Matches: 213, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
130 102 0.48
131 8 0.04
132 1 0.00
133 1 0.00
134 5 0.02
135 81 0.38
136 15 0.07
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (132 bp):
CTGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCTTAGATAACCAGCCGTCCTCATCACG
TAGGAACCAAGTTATCACCCTTCTAAGATGGCCAAGAACTCTTCATCACGCATGAGTAATGTCAT
CC
Found at i:91029 original size:22 final size:22
Alignment explanation
Indices: 91004--91050 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
90994 TATATTATTT
*
91004 AAATTATTTACATTTATGTGTA
1 AAATTATTTACATCTATGTGTA
*
91026 AAATTATTTACGTCTATGTGTA
1 AAATTATTTACATCTATGTGTA
91048 AAA
1 AAA
91051 ATTTTATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (22 bp):
AAATTATTTACATCTATGTGTA
Found at i:96797 original size:51 final size:51
Alignment explanation
Indices: 96720--96851 Score: 142
Period size: 51 Copynumber: 2.6 Consensus size: 51
96710 CCCCTACATG
* * * * * *
96720 GCATAAGGCGCGGCCCAT-GTACCGCGCCTTAGCCAACGTGTCTCCATGTCA
1 GCATAAGGCGCGGTCCATGGGA-CGCGCCTTACCCAACGTGGCGCCAGGTCA
* *
96771 GCATAAGGCGCGGTTCATGGGACGCGCCTTACCCCACGTGGCGCCAGGTCA
1 GCATAAGGCGCGGTCCATGGGACGCGCCTTACCCAACGTGGCGCCAGGTCA
* *
96822 GCGTAAGGCGCGGTGCATAGGG-CGCGCCTT
1 GCATAAGGCGCGGTCCAT-GGGACGCGCCTT
96852 CCTACAAAGG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
51 64 0.93
52 5 0.07
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (51 bp):
GCATAAGGCGCGGTCCATGGGACGCGCCTTACCCAACGTGGCGCCAGGTCA
Found at i:97049 original size:18 final size:18
Alignment explanation
Indices: 97026--97078 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
97016 TTATATCATA
* * *
97026 TCTTATCATTCTTGTTAG
1 TCTTATCAATCTTATCAG
97044 TCTTATCAATCTTATCAG
1 TCTTATCAATCTTATCAG
* *
97062 TCTTATTAATTTTATCA
1 TCTTATCAATCTTATCA
97079 ATCATATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.53
Consensus pattern (18 bp):
TCTTATCAATCTTATCAG
Found at i:97056 original size:9 final size:9
Alignment explanation
Indices: 97019--97081 Score: 54
Period size: 9 Copynumber: 6.9 Consensus size: 9
97009 AGAACAATTA
97019 TATCATATCT
1 TATCA-ATCT
*
97029 TATCATTCT
1 TATCAATCT
* * *
97038 TGTTAGTCT
1 TATCAATCT
97047 TATCAATCT
1 TATCAATCT
*
97056 TATCAGTCT
1 TATCAATCT
* *
97065 TATTAATTT
1 TATCAATCT
97074 TATCAATC
1 TATCAATC
97082 ATATATTAAA
Statistics
Matches: 40, Mismatches: 13, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
9 35 0.88
10 5 0.12
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (9 bp):
TATCAATCT
Found at i:97058 original size:27 final size:27
Alignment explanation
Indices: 97019--97081 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
97009 AGAACAATTA
* * *
97019 TATCATATCTTATCATTCTTGTTAGTCT
1 TATCA-ATCTTATCAGTCTTATTAATCT
*
97047 TATCAATCTTATCAGTCTTATTAATTT
1 TATCAATCTTATCAGTCTTATTAATCT
97074 TATCAATC
1 TATCAATC
97082 ATATATTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (27 bp):
TATCAATCTTATCAGTCTTATTAATCT
Found at i:97568 original size:60 final size:55
Alignment explanation
Indices: 97408--97547 Score: 200
Period size: 55 Copynumber: 2.6 Consensus size: 55
97398 ATAAAAAATA
97408 AAAAAATTCTAATAAATAAA-T-AATT-TTTTTAT--AATTATTTTTAAATGATT
1 AAAAAATTCTAATAAATAAATTAAATTATTTTTATACAATTATTTTTAAATGATT
*
97458 AAAAAATTCTAATAATTAAATTAAATTATTTTTATACAATTATTTTTAAATGATT
1 AAAAAATTCTAATAAATAAATTAAATTATTTTTATACAATTATTTTTAAATGATT
* * * *
97513 CAGAAATTTTAATAAATAAATTAAATTTTTTTTAT
1 AAAAAATTCTAATAAATAAATTAAATTATTTTTAT
97548 TGTTTACATT
Statistics
Matches: 79, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
50 19 0.24
51 1 0.01
52 4 0.05
53 7 0.09
55 48 0.61
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (55 bp):
AAAAAATTCTAATAAATAAATTAAATTATTTTTATACAATTATTTTTAAATGATT
Found at i:98520 original size:19 final size:19
Alignment explanation
Indices: 98496--98535 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
98486 ATATTGGAAT
*
98496 ATGCATTATTAACGTGTGC
1 ATGCATTATTAACGTGGGC
*
98515 ATGCATTGTTAACGTGGGC
1 ATGCATTATTAACGTGGGC
98534 AT
1 AT
98536 TGAGTGAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (19 bp):
ATGCATTATTAACGTGGGC
Found at i:99823 original size:36 final size:36
Alignment explanation
Indices: 99783--99853 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
99773 ACAAACTTTT
* *
99783 TTATTGTATCGTTTATCGACTCGTTTATAAGCTCGC
1 TTATTGGATCATTTATCGACTCGTTTATAAGCTCGC
* * *
99819 TTATTGGCTTATTTATTGACTCGTTTATAAGCTCG
1 TTATTGGATCATTTATCGACTCGTTTATAAGCTCG
99854 TTTACTCGAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (36 bp):
TTATTGGATCATTTATCGACTCGTTTATAAGCTCGC
Found at i:100085 original size:23 final size:23
Alignment explanation
Indices: 100049--100111 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
100039 TTGCCGAATA
*
100049 TTAAACAAATATGTTCATGAACG
1 TTAAACAAACATGTTCATGAACG
* *
100072 TTAAATAAACATGTTCATGAATG
1 TTAAACAAACATGTTCATGAACG
* *
100095 TTAGACGAACATGTTCA
1 TTAAACAAACATGTTCA
100112 AAAACATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (23 bp):
TTAAACAAACATGTTCATGAACG
Found at i:100742 original size:125 final size:125
Alignment explanation
Indices: 100582--100832 Score: 441
Period size: 125 Copynumber: 2.0 Consensus size: 125
100572 AGTTCAAGCA
*
100582 TCAATTTAGACAAAAAAAAAGGGTATAAATATCAATTTGAGCTATTAGAAAAGTTATTTTAGGAT
1 TCAATTTAGACAAAAAAAAAAGGTATAAATATCAATTTGAGCTATTAGAAAAGTTATTTTAGGAT
* *
100647 ATGAAATTGAATTTTGTCCATATTTTGATATTGAAGTAAAGTTCATATCCTAAAGTGTAT
66 ATGAAATTGAATTTTGTCCATATGTTGATATTGAAGTAAAGTTCATATCCTAAAATGTAT
*
100707 TCAATTTAGA-AAAAAAAGAAAGGTATAAATATCAATTTGAGCTATTAGGAAAGTTATTTTAGGA
1 TCAATTTAGACAAAAAAA-AAAGGTATAAATATCAATTTGAGCTATTAGAAAAGTTATTTTAGGA
*
100771 TATGAAATTGAATTTTGTCCATATGTTGATATTGAAGTCAAGTTCATATCCTAAAATGTAT
65 TATGAAATTGAATTTTGTCCATATGTTGATATTGAAGTAAAGTTCATATCCTAAAATGTAT
100832 T
1 T
100833 AACCTAACAA
Statistics
Matches: 120, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
124 7 0.06
125 113 0.94
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.37
Consensus pattern (125 bp):
TCAATTTAGACAAAAAAAAAAGGTATAAATATCAATTTGAGCTATTAGAAAAGTTATTTTAGGAT
ATGAAATTGAATTTTGTCCATATGTTGATATTGAAGTAAAGTTCATATCCTAAAATGTAT
Found at i:103608 original size:13 final size:13
Alignment explanation
Indices: 103590--103615 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103580 ATAAAGAAAA
103590 TTTTTGTTTTTTG
1 TTTTTGTTTTTTG
103603 TTTTTGTTTTTTG
1 TTTTTGTTTTTTG
103616 GTTGTATGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (13 bp):
TTTTTGTTTTTTG
Found at i:110729 original size:14 final size:14
Alignment explanation
Indices: 110712--110743 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
110702 GTATTGCACA
110712 GCAGCAGGTGCATG
1 GCAGCAGGTGCATG
*
110726 GCAGTAGGTGCATG
1 GCAGCAGGTGCATG
110740 GCAG
1 GCAG
110744 GCAGCAGGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.44, T:0.16
Consensus pattern (14 bp):
GCAGCAGGTGCATG
Found at i:110992 original size:2 final size:2
Alignment explanation
Indices: 110985--111033 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
110975 AATACATCAG
110985 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
111027 TA TA TA T
1 TA TA TA T
111034 TATTTATGCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:112178 original size:32 final size:32
Alignment explanation
Indices: 112141--112212 Score: 103
Period size: 32 Copynumber: 2.2 Consensus size: 32
112131 GCGTTTACCG
*
112141 TTGACCGGCGTTGACC-A-CTGTTAACCAGAACT
1 TTGACCGGCGTTGACCGAGC-GTTAAAC-GAACT
112173 TTGACCGGCGTTGACCGAGCGTTAAACGAACT
1 TTGACCGGCGTTGACCGAGCGTTAAACGAACT
112205 TTGACCGG
1 TTGACCGG
112213 GTATACCTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
32 29 0.78
33 7 0.19
34 1 0.03
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (32 bp):
TTGACCGGCGTTGACCGAGCGTTAAACGAACT
Found at i:114397 original size:24 final size:24
Alignment explanation
Indices: 114370--114427 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
114360 TATCTGATTT
* *
114370 CTGATTTGAATTCTGTTATGATAC
1 CTGATATGAATTCTGATATGATAC
* *
114394 CTGACATGGATTCTGATATGATAC
1 CTGATATGAATTCTGATATGATAC
* *
114418 TTGATCTGAA
1 CTGATATGAA
114428 CTATGTTTTG
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (24 bp):
CTGATATGAATTCTGATATGATAC
Found at i:114584 original size:57 final size:57
Alignment explanation
Indices: 114496--114667 Score: 254
Period size: 57 Copynumber: 3.0 Consensus size: 57
114486 GTTGGAGGAA
* *
114496 GAATACTTGCAGGTTCCTTGACTTTGTGCTGAGAGCCTTACTATTCGTGACAGGGTT
1 GAATACTTGCAGGTTCCTTGGCTTTGTGCTGAGAGCCTTACTATTCGTGACGGGGTT
* *
114553 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTATTCATGACGGGGTT
1 GAATACTTGCAGGTTCCTTGGCTTTGTGCTGAGAGCCTTACTATTCGTGACGGGGTT
* * * * * *
114610 GAATACTTACAAGTTCATTGGCTTTGTGCTTAGGGCCTTACTGTTCGTGACGGGGTT
1 GAATACTTGCAGGTTCCTTGGCTTTGTGCTGAGAGCCTTACTATTCGTGACGGGGTT
114667 G
1 G
114668 GATGGTTATG
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 103 1.00
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.35
Consensus pattern (57 bp):
GAATACTTGCAGGTTCCTTGGCTTTGTGCTGAGAGCCTTACTATTCGTGACGGGGTT
Found at i:115718 original size:69 final size:70
Alignment explanation
Indices: 115588--115726 Score: 217
Period size: 69 Copynumber: 2.0 Consensus size: 70
115578 TGTTAATGCA
*
115588 TTGATGAACAATGAATTCATGCCAAGTGACTTATATTTTTCTACATAATATAATCATCGAACTTG
1 TTGATCAACAATGAATTCATGCCAAGTGACTTATATTTTTCTACATAATATAATCATCGAACTTG
115653 AAAAG
66 AAAAG
* ** * *
115658 TTGATCAACAATGAATTCGTGTTAAGTGACTT-TATTTTTGTGCATAATATAATCATCGAACTTG
1 TTGATCAACAATGAATTCATGCCAAGTGACTTATATTTTTCTACATAATATAATCATCGAACTTG
115722 AAAAG
66 AAAAG
115727 ATAATTATCA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
69 35 0.56
70 28 0.44
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (70 bp):
TTGATCAACAATGAATTCATGCCAAGTGACTTATATTTTTCTACATAATATAATCATCGAACTTG
AAAAG
Found at i:128240 original size:20 final size:20
Alignment explanation
Indices: 128217--128304 Score: 104
Period size: 20 Copynumber: 4.3 Consensus size: 20
128207 GTTTCCAAAT
*
128217 TCGCAACGCGAATATGTAAA
1 TCGCAACGCGAATTTGTAAA
** * *
128237 TCGCATTGCGATTTTCTAAA
1 TCGCAACGCGAATTTGTAAA
* *
128257 TTCACAACGCGAATCTGTAAA
1 -TCGCAACGCGAATTTGTAAA
128278 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATTTGTAAA
128298 TCGCAAC
1 TCGCAAC
128305 ACAGAAGTCA
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
20 40 0.74
21 14 0.26
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (20 bp):
TCGCAACGCGAATTTGTAAA
Found at i:128298 original size:41 final size:41
Alignment explanation
Indices: 128208--128298 Score: 119
Period size: 41 Copynumber: 2.2 Consensus size: 41
128198 CGCAACCCAG
* * ** *
128208 TTTCCAAATTCGCAACGCGAATATGTAAATCGCATTGCGAT
1 TTTCTAAATTCACAACGCGAATATGTAAATCGCAACGCGAA
*
128249 TTTCTAAATTCACAACGCGAATCTGTAAATCGCAACGCGAA
1 TTTCTAAATTCACAACGCGAATATGTAAATCGCAACGCGAA
*
128290 TTTGTAAAT
1 TTTCTAAAT
128299 CGCAACACAG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (41 bp):
TTTCTAAATTCACAACGCGAATATGTAAATCGCAACGCGAA
Found at i:128321 original size:20 final size:20
Alignment explanation
Indices: 128298--128480 Score: 214
Period size: 20 Copynumber: 9.1 Consensus size: 20
128288 AATTTGTAAA
*
128298 TCGCAACACAGAAGTCAAAT
1 TCGCAACACTGAAGTCAAAT
* *
128318 TCGCAATACAGAAGTCAAAT
1 TCGCAACACTGAAGTCAAAT
*
128338 TCGCAACACTGAAGACAAAT
1 TCGCAACACTGAAGTCAAAT
128358 TCGCAACACTGAAGTCAAAT
1 TCGCAACACTGAAGTCAAAT
128378 TCGCAACAC-GAA-TCTGTAAA-
1 TCGCAACACTGAAGTC---AAAT
128398 TCGCAACACTGAAGTCAAAT
1 TCGCAACACTGAAGTCAAAT
*
128418 TCGCAACACTGAATTTCAAAT
1 TCGCAACACTGAA-GTCAAAT
*
128439 TCGCAACA-TAAAAGTCAAAT
1 TCGCAACACT-GAAGTCAAAT
*
128459 TCGCAACGC-GAAAGTCAAAT
1 TCGCAACACTG-AAGTCAAAT
128479 TC
1 TC
128481 ACAAAGCGTG
Statistics
Matches: 143, Mismatches: 10, Indels: 20
0.83 0.06 0.12
Matches are distributed among these distances:
18 2 0.01
19 6 0.04
20 111 0.78
21 22 0.15
22 2 0.01
ACGTcount: A:0.42, C:0.24, G:0.14, T:0.20
Consensus pattern (20 bp):
TCGCAACACTGAAGTCAAAT
Found at i:130123 original size:22 final size:22
Alignment explanation
Indices: 130109--130154 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
130099 TATTGAAAAA
130109 TAAATAAATAAATATTAAATAAT
1 TAAA-AAATAAATATTAAATAAT
* *
130132 TTAAAAATAAATA-TAAATTAT
1 TAAAAAATAAATATTAAATAAT
130153 TA
1 TA
130155 TTTATTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
21 8 0.40
22 9 0.45
23 3 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
TAAAAAATAAATATTAAATAAT
Found at i:131533 original size:3 final size:3
Alignment explanation
Indices: 131527--131570 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
131517 ATTATTTTTT
* *
131527 TAA TAA TAA TAA T-A TAA TAA TTA TAA TAA TTA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
131571 ATGGGTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:131940 original size:113 final size:113
Alignment explanation
Indices: 131790--132832 Score: 1271
Period size: 112 Copynumber: 9.3 Consensus size: 113
131780 TAGAGTCATT
* * * * * *
131790 CAAAAGGTTGAATAAGCTCTTATCATTATGAACTTCTTCTTTCTCCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
**** ** * *
131855 TTATGAACTTTCTCTGGAAAAACTGATCCATCAAGTGATGGATTTGAG
66 TTATGAACTCGAACTGGAAATGCTGATCCATCAAGTGATGAATTTAAG
* *
131903 CAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGATGAGTTCTTC
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
* * * * * * *
131968 TCATTATG-ACTCTACCTGGCAATGTTAATCCATCAAAT-ATG-ATTTAAA
63 TCATTATGAACTCGAACTGGAAATGCTGATCCATCAAGTGATGAATTTAAG
* *
132016 CAAAAGGTTG-A-AA-TTC-TCTCATTATGAACTTCTTTTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * ** * * *
132077 TTATGAACTTC--TCTTGAAAAACTGATCCATCAAATGATGAATTCAAT
66 TTATGAAC-TCGAACTGGAAATGCTGATCCATCAAGTGATGAATTTAAG
*
132124 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * *
132189 TTATGAACTCGAACTGGTAACGCTGATCCATTGAA-TGATGAATTCAAT
66 TTATGAACTCGAACTGGAAATGCTGATCCA-TCAAGTGATGAATTTAAG
* * *
132237 TAAAAAGTTGAACAACTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATG-GTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * * * *
132301 ATATGAACTCGAACTGGTAACGCTGATCTATTAA-TGATGAA-TTCAT
66 TTATGAACTCGAACTGGAAATGCTGATCCATCAAGTGATGAATTTAAG
* *
132347 CAAAAAGTTGAACACGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * *
132412 -TATGAACTCGAACTGGTAACGCTGATCCATTGAA-TCATGAATTCAAG
66 TTATGAACTCGAACTGGAAATGCTGATCCA-TCAAGTGATGAATTTAAG
**
132459 CAAAAAGTTGAGTAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * *
132524 TTATGAACTCGAACTGGAAATGTTGATCCACCGAGTGATGAATTTAAG
66 TTATGAACTCGAACTGGAAATGCTGATCCATCAAGTGATGAATTTAAG
132572 CAAAAAGTTGAAC-AGTTCTTCTCA-TATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * *
132635 TTATGAACTCGAACTGGAAATGTTGATCCACCGAGTGATG-ATTTAAG
66 TTATGAACTCGAACTGGAAATGCTGATCCATCAAGTGATGAATTTAAG
132682 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGATTCTTCTC
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG-TTCTTCTC
* * * * *
132747 ATTATGAACTCAAATTGGAAATGTTGATCCACCGAGTGATGAATTT-AG
65 ATTATGAACTCGAACTGGAAATGCTGATCCATCAAGTGATGAATTTAAG
132795 C-AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTC
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTC
132833 AGATGATGAG
Statistics
Matches: 833, Mismatches: 74, Indels: 47
0.87 0.08 0.05
Matches are distributed among these distances:
106 37 0.04
107 6 0.01
108 16 0.02
109 28 0.03
110 106 0.13
111 125 0.15
112 232 0.28
113 231 0.28
114 10 0.01
115 22 0.03
116 20 0.02
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (113 bp):
CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCGAACTGGAAATGCTGATCCATCAAGTGATGAATTTAAG
Found at i:132177 original size:24 final size:23
Alignment explanation
Indices: 132142--132186 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
132132 TGAACAAGTT
132142 CTTCTCATTATGAACTTCTTCTTC
1 CTTCTCATTATG-ACTTCTTCTTC
*
132166 CTTCTTCA-TATGAGTTCTTCT
1 CTTC-TCATTATGACTTCTTCT
132187 CATTATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.16, C:0.27, G:0.07, T:0.51
Consensus pattern (23 bp):
CTTCTCATTATGACTTCTTCTTC
Found at i:132179 original size:112 final size:112
Alignment explanation
Indices: 131790--132832 Score: 1242
Period size: 113 Copynumber: 9.3 Consensus size: 112
131780 TAGAGTCATT
* * * * * *
131790 CAAAAGGTTGAATAAGCTCTTATCATTATGAACTTCTTCTTTCTCCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* ** * **
131855 TTATGAACTTTC-TCTGGAAAAACTGATCCATC-AAGTGATGGATTTGAG
66 TTATGAAC--TCAACTGGAAATGCTGATCCATCGAA-TGATGAATTCAAG
* *
131903 CAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGATGAGTTCTTC
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
* * * * * * *
131968 TCATTATG-ACTCTACCTGGCAATGTTAATCCATCAAAT-ATG-ATTTAAA
63 TCATTATGAACTC-AACTGGAAATGCTGATCCATCGAATGATGAATTCAAG
* *
132016 CAAAAGGTTG-A-AA-TTC-TCTCATTATGAACTTCTTTTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * ** * *
132077 TTATGAACTTC-TCTTGAAAAACTGATCCATCAAATGATGAATTCAAT
66 TTATGAAC-TCAACTGGAAATGCTGATCCATCGAATGATGAATTCAAG
*
132124 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * *
132189 TTATGAACTCGAACTGGTAACGCTGATCCATTGAATGATGAATTCAAT
66 TTATGAACTC-AACTGGAAATGCTGATCCATCGAATGATGAATTCAAG
* * *
132237 TAAAAAGTTGAACAACTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATG-GTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * * *
132301 ATATGAACTCGAACTGGTAACGCTGATCTAT-TAATGATGAATTC-AT
66 TTATGAACTC-AACTGGAAATGCTGATCCATCGAATGATGAATTCAAG
* *
132347 CAAAAAGTTGAACACGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * *
132412 -TATGAACTCGAACTGGTAACGCTGATCCATTGAATCATGAATTCAAG
66 TTATGAACTC-AACTGGAAATGCTGATCCATCGAATGATGAATTCAAG
**
132459 CAAAAAGTTGAGTAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * *
132524 TTATGAACTCGAACTGGAAATGTTGATCCACCGAGTGATGAATTTAAG
66 TTATGAACTC-AACTGGAAATGCTGATCCATCGAATGATGAATTCAAG
132572 CAAAAAGTTGAAC-AGTTCTTCTCA-TATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * *
132635 TTATGAACTCGAACTGGAAATGTTGATCCACCGAGTGATG-ATTTAAG
66 TTATGAACTC-AACTGGAAATGCTGATCCATCGAATGATGAATTCAAG
132682 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGATTCTTCTC
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG-TTCTTCTC
* * * * *
132747 ATTATGAACTCAAATTGGAAATGTTGATCCACCGAGTGATGAATT-TAG
65 ATTATGAACTC-AACTGGAAATGCTGATCCATCGAATGATGAATTCAAG
132795 C-AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTC
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTC
132833 AGATGATGAG
Statistics
Matches: 837, Mismatches: 69, Indels: 49
0.88 0.07 0.05
Matches are distributed among these distances:
106 37 0.04
107 6 0.01
108 16 0.02
109 28 0.03
110 106 0.13
111 129 0.15
112 231 0.28
113 238 0.28
114 6 0.01
115 18 0.02
116 22 0.03
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (112 bp):
CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCAACTGGAAATGCTGATCCATCGAATGATGAATTCAAG
Found at i:132498 original size:335 final size:334
Alignment explanation
Indices: 131790--132832 Score: 1282
Period size: 335 Copynumber: 3.1 Consensus size: 334
131780 TAGAGTCATT
* * * * * *
131790 CAAAAGGTTGAATAAGCTCTTATCATTATGAACTTCTTCTTTCTCCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
**** * * * *
131855 TTATGAACTTTCTCTGGAAAAACTGATCCATCAAGTGATGGATTTGAGCAAAAAGTTGAACAAAT
66 TTATGAACTCGAACTGGAAAAGCTGATCCATGAA-TGATGAATTTAAGCAAAAAGTTGAACAAAT
* * *
131920 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGATGAGTTCTTCTCATTATG-ACTCTACC
130 TCTTCTCATTATGAACTTCTTCTTCCTTCTTC--AT-ATGAGTTCTTCTCATTATGAACTCGAAC
* * *
131984 TGGCAATGTTAATCCATCAAAT-ATGATTTAAACAAAAGGTTGAA-A-TTC-TCTCATTATGAAC
192 TGGAAATGTTGATCCAT-AAATGATGATTTAAACAAAAAGTTGAACAGTTCTTCTCATTATGAAC
* * * * * *
132045 TTCTTTTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTC-TCTTGAAAAACTGATCCATCA
256 TTCTTCTTCCTTCTTCAGATGAATTCTTCTCATTATGAAC-TCAACTGGAAAAGCTGATCCATCG
*
132109 AATGATGAATTCAAT
320 AATGATGAATTCAAG
*
132124 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * ** *
132189 TTATGAACTCGAACTGGTAACGCTGATCCATTGAATGATGAATTCAATTAAAAAGTTGAACAACT
66 TTATGAACTCGAACTGGAAAAGCTGATCCA-TGAATGATGAATTTAAGCAAAAAGTTGAACAAAT
*
132254 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATG-GTTCTTCTCAATATGAACTCGAACTGG
130 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACTCGAACTGG
* * * * * * * *
132318 TAACGCTGATCTATTAATGATGAATTCATCAAAAAGTTGAACACGTTCTTCTCATTATGAACTTC
195 AAATGTTGATCCATAAATGATGATTTAAACAAAAAGTTGAACA-GTTCTTCTCATTATGAACTTC
* * * *
132383 TTCTTCCTTCTTCAGATGACTTCTTCTCA-TATGAACTCGAACTGGTAACGCTGATCCATTGAAT
259 TTCTTCCTTCTTCAGATGAATTCTTCTCATTATGAACTC-AACTGGAAAAGCTGATCCATCGAAT
*
132447 CATGAATTCAAG
323 GATGAATTCAAG
**
132459 CAAAAAGTTGAGTAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * *
132524 TTATGAACTCGAACTGGAAATGTTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAAC-AGT
66 TTATGAACTCGAACTGGAAAAGCTGATCCA-TGAATGATGAATTTAAGCAAAAAGTTGAACAAAT
*
132588 TCTTCTCA-TATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGG
130 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACTCGAACTGG
** * *
132652 AAATGTTGATCCACCGAGTGATGATTTAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
195 AAATGTTGATCCA-TAAATGATGATTTAAACAAAAAGTTGAAC-AGTTCTTCTCATTATGAACTT
* * * *
132717 CTTCTTCCTTCTTCAGATGAGATTCTTCTCATTATGAACTCAAATTGGAAATGTTGATCCACCGA
258 CTTCTTCCTTCTTCAGATGA-ATTCTTCTCATTATGAACTC-AACTGGAAAAGCTGATCCATCGA
* *
132782 GTGATGAATT-TAG
321 ATGATGAATTCAAG
132795 C-AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTC
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTC
132833 AGATGATGAG
Statistics
Matches: 611, Mismatches: 84, Indels: 27
0.85 0.12 0.04
Matches are distributed among these distances:
330 17 0.03
331 39 0.06
332 3 0.00
333 29 0.05
334 191 0.31
335 285 0.47
336 13 0.02
337 34 0.06
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (334 bp):
CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCGAACTGGAAAAGCTGATCCATGAATGATGAATTTAAGCAAAAAGTTGAACAAATT
CTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACTCGAACTGGA
AATGTTGATCCATAAATGATGATTTAAACAAAAAGTTGAACAGTTCTTCTCATTATGAACTTCTT
CTTCCTTCTTCAGATGAATTCTTCTCATTATGAACTCAACTGGAAAAGCTGATCCATCGAATGAT
GAATTCAAG
Found at i:133790 original size:90 final size:92
Alignment explanation
Indices: 133637--134180 Score: 696
Period size: 90 Copynumber: 6.0 Consensus size: 92
133627 TCTACTATGA
* * *
133637 GCACATTCATCTTTCAAATCCAATGATT-GATTTTTGAGGTTCATACCAAACCAGATCAGATAAC
1 GCACATTCATCTTCCAAATTCAATGATTGGTTTTTTGAGGTTCATACCAAACCAGATCAGATAAC
133701 TCAAAGAACACTTCCAGAAGATG-TAT
66 TCAAAGAACACTTCCAGAAGATGCTAT
133727 GCACATTCATCTTCCAAATTC-ATGATTGGTTTTTTGAGGTTCATACCAAACCAGATCAGATAAC
1 GCACATTCATCTTCCAAATTCAATGATTGGTTTTTTGAGGTTCATACCAAACCAGATCAGATAAC
133791 TCAAAGAACACTTCCAGAAGATGCTAT
66 TCAAAGAACACTTCCAGAAGATGCTAT
** * *
133818 GATCACATTCATCTTATAAATTCAATGATTGATTTTTTGGGGTTCATACC-AACCAGATCAGATA
1 G--CACATTCATCTTCCAAATTCAATGATTGGTTTTTTGAGGTTCATACCAAACCAGATCAGATA
133882 ACTCAAAGAACAC-TCCAGAAGATGCTAT
64 ACTCAAAGAACACTTCCAGAAGATGCTAT
* *
133910 GATCACATTCATCTTCC-AATTC-ATGATTGG-TTTTAG-GGTTCATATCAAACCAGATCAGATA
1 G--CACATTCATCTTCCAAATTCAATGATTGGTTTTTTGAGGTTCATACCAAACCAGATCAGATA
133971 ACTC-AAGAACACTTCCAGAAGATGCTAT
64 ACTCAAAGAACACTTCCAGAAGATGCTAT
* *
133999 GAGCACATTCA-CTTCCAAATTCAATGATTGGTTTTTAG-GGTTTCATATCAAACCAGATCAGAT
1 --GCACATTCATCTTCCAAATTCAATGATTGGTTTTTTGAGG-TTCATACCAAACCAGATCAGAT
* *
134062 AACTCAAAAAAACACTTCTAGAAGAT-CTAT
63 AACTC-AAAGAACACTTCCAGAAGATGCTAT
*
134092 GAGCACATTCATCTTCCAAATTCAATGATTGG--TTTT-AGGGT--T--CAAACCAGATCAGATA
1 --GCACATTCATCTTCCAAATTCAATGATTGGTTTTTTGAGGTTCATACCAAACCAGATCAGATA
* *
134150 ACTCAAAAAAAACACTTCTAGAAGATGCTAT
64 ACTC--AAAGAACACTTCCAGAAGATGCTAT
134181 TAGGTCTACG
Statistics
Matches: 419, Mismatches: 16, Indels: 39
0.88 0.03 0.08
Matches are distributed among these distances:
87 20 0.05
88 43 0.10
89 62 0.15
90 92 0.22
91 19 0.05
92 62 0.15
93 60 0.14
94 61 0.15
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (92 bp):
GCACATTCATCTTCCAAATTCAATGATTGGTTTTTTGAGGTTCATACCAAACCAGATCAGATAAC
TCAAAGAACACTTCCAGAAGATGCTAT
Done.