genome.fa.s1532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001532.1 Hibiscus syriacus cultivar Beakdansim tig00003005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105789

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7998--8026	15	1.9	15	100	0	58	48	0	17	34	1.47
8797--8848	20	2.6	20	78	6	61	36	13	23	26	1.92
9324--9370	15	3.1	15	73	11	51	25	8	23	42	1.82
9313--9370	30	1.9	30	89	0	89	27	8	22	41	1.83
9480--9529	25	2.0	24	92	3	82	22	26	24	28	1.99
22574--22667	21	4.5	21	100	0	188	32	10	22	34	1.88
22760--22802	22	1.9	23	85	4	61	41	9	25	23	1.84
23166--23229	30	2.1	30	82	0	74	29	10	21	37	1.88
23351--23414	25	2.7	24	76	7	67	25	20	23	31	1.98
23340--23406	25	2.7	24	77	6	73	23	22	22	31	1.98
23394--23438	23	1.9	24	86	13	67	22	20	26	31	1.98
27569--27620	19	2.7	18	72	21	52	30	13	19	36	1.90
30123--30163	17	2.4	17	91	0	64	58	4	21	14	1.55
30912--30945	15	2.2	15	94	5	59	67	0	0	32	0.91
32994--33041	20	2.4	21	76	16	57	47	0	6	45	1.27
36715--36764	22	2.4	20	86	6	64	8	16	0	76	1.02
36774--36868	15	5.8	16	75	14	68	7	17	2	72	1.17
36779--36893	33	3.4	32	78	13	108	6	17	1	74	1.10
36811--36893	42	2.0	42	83	4	105	6	16	2	74	1.12
36801--36893	8	10.8	9	73	18	56	5	17	2	75	1.09
44995--45242	51	4.7	51	78	6	219	27	25	15	31	1.96
44834--45237	55	7.5	54	80	6	362	29	23	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45250--45359	37	3.0	36	85	6	141	22	20	18	39	1.93
47042--47092	19	2.7	19	80	11	61	47	0	1	50	1.12
48506--48550	21	2.2	21	88	11	67	28	4	64	2	1.25
50133--50242	24	4.6	24	74	10	93	47	16	15	20	1.83
50137--50228	12	7.8	12	68	16	57	47	17	15	19	1.82
50135--50225	47	1.9	48	82	10	116	48	16	15	19	1.81
54855--54926	24	3.0	23	84	6	90	50	16	12	20	1.78
54883--54923	12	3.5	11	83	9	55	48	19	17	14	1.81
54889--54927	12	3.3	12	78	7	53	46	20	17	15	1.84
57371--57414	15	2.8	15	89	6	61	27	27	31	13	1.94
57414--57449	13	2.8	13	86	0	54	13	16	50	19	1.79
58726--58758	11	3.0	11	100	0	66	18	0	9	72	1.10
59504--59558	24	2.3	24	93	0	101	29	16	14	40	1.88
59782--59839	30	1.9	30	85	0	80	12	31	22	34	1.91
60041--60696	182	3.7	182	83	7	833	42	13	14	28	1.84
63352--63381	11	2.7	11	100	0	60	36	0	56	6	1.26
67608--68961	200	6.8	199	90	1	2097	38	13	15	31	1.87
67605--68961	598	2.3	596	90	1	2155	38	14	15	31	1.87
68925--68968	21	2.0	22	91	4	72	31	9	9	50	1.65
69250--69309	15	3.7	15	77	14	66	26	40	3	30	1.72
70432--70471	18	2.2	18	90	0	62	50	0	27	22	1.50
71903--71939	18	2.1	18	89	0	56	32	5	5	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73181--73224	21	2.1	21	95	0	79	47	13	9	29	1.74
76771--76816	21	2.2	20	81	7	56	26	13	15	45	1.82
82975--82999	13	1.9	13	100	0	50	24	32	16	28	1.96
84255--84322	2	34.0	2	100	0	136	50	0	0	50	1.00
84322--84346	12	2.1	12	100	0	50	0	0	40	60	0.97
84955--85043	45	2.0	45	100	0	178	26	17	12	42	1.85
85217--85246	15	1.9	16	93	6	53	36	0	0	63	0.95
85216--85258	15	2.6	16	82	17	52	44	0	0	55	0.99
92605--92643	19	2.0	20	85	5	53	25	15	20	38	1.92
97515--97545	14	2.2	14	100	0	62	67	19	6	6	1.35
98765--98809	21	2.1	21	91	0	72	33	26	24	15	1.95
99293--99361	2	34.5	2	100	0	138	50	0	0	49	1.00
100195--100291	32	3.1	32	78	14	128	28	17	18	35	1.94
100194--100294	31	3.2	31	81	10	125	28	18	18	33	1.95
100282--100375	30	3.1	30	90	3	136	20	21	27	30	1.98
101284--101451	75	2.2	75	89	1	246	23	31	23	20	1.98

Tables:   1

The End!