genome.fa.s1533.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001533.1 Hibiscus syriacus cultivar Beakdansim tig00003008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84423

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5593--5632	21	2.0	20	85	5	53	27	15	20	37	1.92
13629--13702	28	2.6	28	79	8	71	13	18	2	64	1.39
16665--16705	22	1.9	21	95	5	73	24	43	17	14	1.86
18733--18946	2	114.0	2	68	26	114	54	2	1	40	1.26
18718--18946	41	5.5	41	74	18	172	55	3	1	40	1.26
18733--18946	34	6.4	32	71	23	158	54	2	1	40	1.26
18690--18946	39	6.4	41	70	21	142	55	2	1	40	1.25
18708--18946	27	8.1	30	72	22	161	55	2	1	40	1.25
22363--22402	21	1.9	21	89	0	62	10	25	40	25	1.86
26254--26293	21	1.9	21	85	10	55	35	10	2	52	1.48
28579--28733	2	82.0	2	72	20	129	54	3	0	41	1.16
28586--28735	11	13.8	10	75	18	106	56	2	0	41	1.13
28574--28721	33	4.0	39	76	21	158	56	2	0	41	1.14
28579--28726	53	2.7	56	81	16	193	55	2	0	41	1.14
28579--28727	27	5.4	28	81	11	175	55	2	0	42	1.14
36646--36670	11	2.3	11	100	0	50	76	0	0	24	0.80
37829--37882	17	3.3	17	71	10	58	3	9	22	64	1.38
38457--38591	2	73.5	2	67	28	70	56	2	1	40	1.21
38457--38594	27	5.3	26	75	20	105	56	2	1	39	1.20
38524--38599	3	23.7	3	75	19	57	56	2	0	40	1.13
38458--38594	35	3.8	37	73	20	82	56	2	1	40	1.21
38454--38592	67	2.0	65	83	15	167	56	2	1	39	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38513--38599	29	3.1	29	85	12	119	57	2	0	40	1.11
38459--38599	36	4.1	34	76	19	143	56	2	1	39	1.20
38471--38599	29	4.7	27	78	19	110	55	2	1	40	1.22
39321--39409	38	2.3	38	80	3	99	39	35	11	13	1.80
39587--39649	28	2.3	28	91	2	101	42	31	9	15	1.79
39810--39904	39	2.5	40	86	5	126	37	37	12	11	1.80
39922--40008	36	2.4	36	96	0	165	36	33	14	14	1.88
42861--42887	14	1.9	14	100	0	54	0	11	7	81	0.87
43062--43097	13	2.8	13	100	0	72	52	5	0	41	1.24
43322--43360	14	2.7	15	88	7	55	33	2	0	64	1.08
43391--43431	20	2.0	20	100	0	82	51	9	9	29	1.67
43434--43505	37	1.9	37	85	2	99	38	20	22	18	1.93
46392--46424	16	2.2	15	89	10	50	48	21	3	27	1.64
46948--47286	169	2.0	170	98	0	662	47	5	10	37	1.60
50278--50315	20	1.9	20	100	0	76	28	10	42	18	1.83
50871--50897	14	1.9	14	100	0	54	74	0	3	22	0.98
50867--50913	23	2.0	23	84	8	60	68	0	2	29	1.02
51980--52043	24	2.6	25	82	7	78	50	42	7	0	1.31
51980--52036	12	4.7	12	77	2	51	49	42	8	0	1.34
55500--55546	18	2.6	18	93	0	76	27	14	21	36	1.93
58197--58278	42	2.0	42	85	0	110	37	15	20	25	1.93
61975--62017	21	2.0	21	90	0	68	32	4	11	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64016--64066	21	2.3	22	80	13	59	33	21	17	27	1.96
79583--79657	16	4.4	16	74	23	57	77	0	10	12	1.00
79592--79666	16	4.6	16	73	16	64	80	0	10	9	0.92
79613--79676	9	7.2	9	73	8	60	82	0	10	6	0.82
79639--79676	10	3.9	10	89	6	60	86	0	13	0	0.56
79639--79676	19	2.0	19	94	0	67	86	0	13	0	0.56
82198--82557	119	3.0	120	79	4	388	36	16	21	25	1.94
82729--82771	17	2.6	17	92	7	72	48	4	25	20	1.69
82651--82850	96	2.1	96	87	3	287	38	14	20	26	1.91
82747--83052	117	2.6	118	91	0	488	38	14	20	25	1.91

Tables:   1

The End!