genome.fa.s1534.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001534.1 Hibiscus syriacus cultivar Beakdansim tig00003010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71290

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
687--754	21	3.2	21	70	2	55	19	20	35	25	1.96
687--775	43	2.1	43	83	4	110	19	20	35	24	1.95
1024--1210	91	2.0	90	88	8	279	48	18	11	21	1.79
1353--1494	63	2.3	63	86	2	151	26	35	16	20	1.94
1376--1506	63	2.1	63	98	0	253	23	36	18	21	1.95
2949--3010	20	3.2	20	83	4	81	45	17	20	16	1.86
3035--3079	19	2.4	19	80	0	54	6	15	26	51	1.68
3634--3686	20	2.7	20	90	0	79	26	18	28	26	1.98
3695--3748	20	2.7	20	97	0	99	25	18	24	31	1.97
3635--3751	61	1.9	61	85	0	162	23	17	24	34	1.96
3630--3769	61	2.3	61	80	6	160	23	17	24	34	1.96
3819--3859	21	2.0	21	85	0	55	34	31	17	17	1.93
4809--4885	2	38.5	2	100	0	154	49	0	0	50	1.00
6384--6410	6	4.5	6	100	0	54	14	14	51	18	1.76
6384--6418	18	1.9	18	88	0	52	17	17	45	20	1.85
6818--6881	30	2.1	30	100	0	128	34	12	23	29	1.92
11221--11246	5	5.2	5	100	0	52	23	57	19	0	1.40
16396--16538	60	2.4	60	80	9	157	32	25	4	37	1.75
22442--22503	31	2.2	28	81	16	74	17	24	29	29	1.97
29766--29825	24	2.5	25	81	7	63	45	3	3	48	1.35
30951--30986	16	2.3	16	90	4	56	33	0	0	66	0.92
31005--31067	24	2.6	24	100	0	126	33	3	3	60	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31899--31952	20	2.8	19	76	20	58	35	0	29	35	1.58
33415--33458	23	1.9	23	90	9	72	43	13	27	15	1.85
34790--34855	17	3.9	17	80	4	80	56	6	16	21	1.62
37618--38508	84	10.7	84	77	5	797	24	19	24	31	1.98
37638--38467	165	5.0	164	82	4	774	25	19	24	30	1.98
57304--57364	15	4.0	15	89	4	86	36	32	18	13	1.89
57512--57546	12	2.9	12	91	0	52	37	25	5	31	1.80
57857--58077	64	3.5	64	84	3	223	27	19	19	33	1.96
64227--64259	15	2.2	15	100	0	66	33	33	18	15	1.92
64402--64438	12	3.1	12	84	0	56	37	24	5	32	1.78
64748--64867	64	1.9	62	86	3	168	25	15	21	36	1.93
64748--64892	64	2.3	64	82	7	161	27	15	21	35	1.94
68014--68081	31	2.2	30	82	7	82	22	10	8	58	1.58
68150--68240	38	2.4	39	88	1	139	50	14	13	21	1.76

Tables:   1

The End!