genome.fa.s1535.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001535.1 Hibiscus syriacus cultivar Beakdansim tig00003012_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74863

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2364--2419	20	2.8	20	83	2	67	41	19	23	16	1.90
2348--2438	41	2.3	40	92	3	148	39	17	25	17	1.91
2364--2432	21	3.3	21	79	4	95	40	18	24	15	1.90
2466--2511	20	2.3	20	88	0	65	26	28	19	26	1.99
2703--2751	22	2.3	21	89	6	73	20	40	14	24	1.89
4301--4344	18	2.5	18	81	3	54	27	40	15	15	1.88
4703--4799	48	2.0	49	97	2	187	16	11	18	53	1.72
4869--4933	19	3.4	19	78	4	69	36	24	23	15	1.93
4923--4979	14	3.8	14	78	17	69	47	24	17	10	1.79
4907--4996	32	2.8	32	96	1	162	46	22	18	12	1.82
4869--5001	19	7.6	19	70	19	65	42	23	21	13	1.88
5013--5070	14	3.9	14	75	16	62	12	17	22	48	1.80
5008--5083	32	2.3	33	93	2	127	11	19	21	47	1.81
5029--5086	18	3.4	19	68	24	56	15	18	18	46	1.84
5071--5114	20	2.2	20	88	4	63	18	25	20	36	1.95
5059--5125	19	3.5	19	79	4	71	14	20	23	40	1.90
9734--9819	19	4.5	19	88	5	111	9	16	26	47	1.76
10339--10452	20	5.7	20	84	6	140	23	18	24	33	1.97
10523--10563	21	2.0	21	85	0	55	34	31	17	17	1.93
19242--19299	29	2.0	30	89	3	91	46	17	5	31	1.70
19315--19359	22	2.0	23	82	8	56	55	4	4	35	1.40
20791--20887	15	6.6	15	79	16	82	58	2	1	38	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20807--20868	24	2.7	24	77	5	65	62	1	1	33	1.14
21665--21694	2	15.0	2	92	0	51	46	0	0	53	1.00
25965--26017	21	2.5	21	78	6	63	22	26	18	32	1.97
26024--26079	21	2.7	21	97	0	103	39	17	23	19	1.92
26065--26196	41	3.2	41	79	2	140	37	25	13	23	1.91
26068--26175	20	5.3	20	80	6	92	34	27	13	24	1.93
26369--26412	22	2.0	22	90	0	70	22	43	15	18	1.88
28617--28669	20	2.7	20	79	5	63	39	20	22	16	1.92
28713--28770	14	3.8	14	77	20	62	12	15	22	50	1.77
28714--28786	33	2.2	33	97	0	137	13	17	20	47	1.81
28759--28845	20	4.4	20	88	1	122	14	24	24	36	1.93
28772--28871	20	5.1	19	85	6	83	21	20	25	34	1.97
28772--28865	40	2.4	40	83	5	111	18	21	25	35	1.95
29213--29273	21	3.0	20	69	7	59	24	42	11	21	1.86
29210--29300	41	2.2	42	86	2	130	23	41	14	20	1.89
30709--30747	14	2.8	14	84	0	51	35	0	17	46	1.49
30910--31011	20	5.2	20	85	2	109	15	22	21	40	1.91
31225--31274	20	2.5	19	78	9	64	22	16	22	40	1.91
31304--31356	21	2.5	21	96	0	97	26	20	11	41	1.86
32158--32211	24	2.2	24	90	0	81	22	16	20	40	1.91
32386--32410	12	2.1	12	100	0	50	72	0	28	0	0.86
34738--34815	19	4.4	19	81	15	112	46	17	20	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35012--35048	14	2.6	14	91	0	65	45	24	0	29	1.53
36740--36924	91	2.0	90	89	6	282	48	18	11	21	1.79
38625--38751	33	3.8	33	88	1	191	48	20	20	11	1.80
39331--39421	20	4.6	20	83	2	76	23	19	20	36	1.95
39411--39473	20	3.0	21	79	4	74	39	17	20	22	1.92
39493--39544	20	2.5	21	87	3	70	21	23	17	38	1.93
39934--39960	14	1.9	14	100	0	54	44	0	0	55	0.99
40885--41091	21	10.0	21	73	13	160	21	20	23	35	1.96
40910--41088	42	4.3	41	90	1	270	20	19	23	36	1.95
41816--42074	21	12.6	21	75	10	241	34	24	20	20	1.97
41858--42068	61	3.5	60	91	5	327	34	25	19	20	1.96
41802--42049	103	2.4	103	85	2	356	35	23	20	21	1.96
42089--42135	21	2.2	21	100	0	94	19	19	34	27	1.96
43306--43350	22	2.0	23	82	4	56	55	4	8	31	1.51
44510--44552	17	2.6	16	78	10	50	9	16	41	32	1.80
44624--44656	17	1.9	17	88	11	50	63	0	0	36	0.95
44779--44915	55	2.5	55	83	2	177	32	17	18	31	1.94
44822--46598	102	17.4	102	83	3	2000	32	18	19	29	1.96
45744--46141	55	7.7	55	70	17	267	31	18	18	30	1.96
46112--46337	47	4.6	47	76	12	204	33	18	17	30	1.94
46152--46447	55	5.7	55	77	13	220	33	18	16	32	1.93
46705--47196	62	8.0	61	82	6	492	34	15	21	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46721--47196	186	2.6	185	84	2	580	34	15	21	27	1.94
49345--49527	97	1.9	96	86	1	258	31	16	16	34	1.92
55799--55844	3	16.0	3	84	8	60	60	0	0	39	0.97
55799--55844	20	2.3	20	92	0	74	60	0	0	39	0.97
59359--59409	16	3.1	17	78	13	54	52	0	0	47	1.00
59373--59413	19	2.2	19	90	0	64	48	0	0	51	1.00
60985--61061	31	2.4	32	86	2	102	55	6	0	37	1.26
69387--69470	29	3.0	28	72	18	75	39	13	10	36	1.79
69388--69513	58	2.2	58	84	2	164	38	14	11	34	1.83

Tables:   1

The End!