genome.fa.s1537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001537.1 Hibiscus syriacus cultivar Beakdansim tig00003019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107001

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346--875	56	9.5	57	83	6	577	36	9	19	34	1.84
346--827	113	4.3	114	82	7	565	36	9	18	35	1.83
1231--1381	81	1.9	81	85	0	212	37	11	23	26	1.90
1434--1490	2	28.5	2	96	0	105	49	0	1	49	1.11
3166--3205	3	13.7	3	94	5	73	65	0	0	35	0.93
6995--7043	22	2.2	22	89	7	73	14	20	51	14	1.77
7160--7196	13	2.7	14	87	8	58	62	2	0	35	1.10
7593--7676	31	2.6	33	67	14	77	33	17	14	34	1.90
7649--8194	112	4.9	112	89	3	805	26	19	15	37	1.92
7540--8194	224	3.0	222	86	6	888	27	19	15	37	1.92
7416--8165	336	2.2	333	84	7	932	26	19	15	38	1.91
8546--8671	22	5.7	22	80	7	148	34	14	17	34	1.90
8546--8677	44	3.0	44	94	0	228	34	13	18	34	1.90
9081--9166	44	2.0	42	86	4	118	29	25	10	34	1.89
10039--10183	75	1.9	75	88	0	218	30	17	16	35	1.93
19002--19039	18	2.1	18	85	9	51	57	2	0	39	1.12
20431--20497	3	23.0	3	81	6	75	62	4	0	32	1.15
24578--24624	20	2.3	20	96	0	85	21	0	38	40	1.53
28104--28143	15	2.6	15	84	15	55	75	0	25	0	0.81
29735--30009	36	7.6	36	77	8	186	30	25	10	33	1.90
29770--30056	72	3.9	72	77	5	292	28	24	12	34	1.91
29770--30009	108	2.2	107	84	5	297	30	25	11	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30295--30466	71	2.4	71	77	1	175	40	28	14	16	1.88
38820--38876	20	2.7	22	75	22	59	35	1	36	26	1.67
44259--44297	19	2.2	18	86	9	53	33	25	10	30	1.89
45284--45405	32	3.8	32	78	0	109	18	27	28	25	1.98
50376--50468	12	7.8	12	74	9	82	49	18	15	17	1.80
50374--50482	24	4.5	24	81	2	130	48	17	16	17	1.81
50374--50482	48	2.3	47	87	3	146	48	17	16	17	1.81
52988--53053	18	3.9	18	71	18	70	18	16	46	18	1.84
55099--55167	12	5.8	12	73	13	61	52	17	13	17	1.75
55098--55205	24	4.5	24	75	4	85	48	16	14	20	1.81
57706--57748	13	3.3	13	90	0	68	18	20	44	16	1.87
57725--57770	18	2.6	18	89	0	74	17	17	47	17	1.83
57781--57808	11	2.5	11	100	0	56	50	28	7	14	1.69
58568--58653	36	2.4	35	80	1	91	34	24	11	29	1.91
63341--63378	14	2.7	14	91	0	67	39	18	0	42	1.50
66838--66866	13	2.2	13	100	0	58	27	0	0	72	0.85
78358--78406	23	2.1	23	88	7	73	57	10	2	30	1.43
81371--81429	27	2.2	27	93	0	100	16	8	40	33	1.79
84547--84585	19	2.1	19	85	0	51	53	7	0	38	1.30
88149--88313	74	2.2	74	81	3	197	32	26	17	23	1.96
88271--88311	20	2.0	20	95	0	73	24	34	14	26	1.94
96364--96396	13	2.5	14	85	14	52	42	9	6	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96718--96837	54	2.2	54	88	4	172	33	25	19	22	1.97
98559--98605	18	2.5	19	82	3	51	36	6	12	44	1.68
102047--102124	22	3.6	22	72	19	74	35	14	23	26	1.93
102088--102146	20	2.8	20	82	5	64	32	13	27	27	1.94
102480--102906	54	7.9	54	87	0	584	33	18	19	28	1.96
106174--106234	28	2.1	29	82	8	72	22	4	18	54	1.63

Tables:   1

The End!