genome.fa.s1538.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001538.1 Hibiscus syriacus cultivar Beakdansim tig00003020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120532

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956--990	17	2.1	17	100	0	70	34	5	0	60	1.21
3654--3690	19	1.9	19	89	10	58	8	24	0	67	1.17
5972--6508	183	2.9	183	95	0	950	27	20	21	31	1.98
7662--7775	36	3.2	34	71	9	86	25	16	14	43	1.85
7646--7807	72	2.2	76	85	8	219	27	19	12	40	1.88
7685--7857	73	2.4	72	80	8	165	27	17	15	39	1.90
7914--7988	39	1.9	39	83	5	98	26	22	13	37	1.91
7891--8208	104	3.1	104	93	1	525	30	20	12	36	1.89
8108--8183	36	2.1	36	90	0	116	22	21	15	40	1.90
8383--8907	105	5.0	105	93	1	862	33	26	17	21	1.96
9450--9554	37	2.8	37	85	0	138	41	14	14	29	1.85
9915--9957	18	2.5	17	85	7	61	25	4	2	67	1.22
9959--9985	2	13.5	2	100	0	54	48	0	0	51	1.00
9966--10086	49	2.4	51	79	10	133	38	4	0	56	1.27
10240--10269	14	2.1	15	93	6	53	33	3	0	63	1.11
10461--10536	2	38.0	2	94	0	134	47	0	0	52	1.00
16265--16307	3	14.3	3	100	0	86	32	0	0	67	0.91
16303--16346	16	2.8	16	100	0	88	11	18	0	70	1.16
20224--20441	103	2.1	103	97	0	409	27	13	22	37	1.91
20457--20525	23	3.0	23	84	0	84	23	23	24	28	1.99
23960--24118	64	2.5	64	83	4	178	34	19	17	28	1.95
24760--24915	31	5.0	31	95	1	260	19	17	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28434--28591	64	2.5	64	84	4	185	34	20	18	27	1.96
29247--29340	31	3.0	31	95	3	163	18	19	24	38	1.93
31887--32006	42	2.9	42	96	0	213	15	20	18	45	1.85
32194--32254	22	2.8	23	82	7	65	47	0	0	52	1.00
32194--32345	52	2.9	52	75	18	145	46	0	1	51	1.14
32205--32283	31	2.5	32	80	16	92	48	1	0	50	1.08
32530--32599	20	3.5	20	96	0	131	35	14	10	40	1.79
32530--32608	40	2.0	40	89	0	122	35	15	8	40	1.78
32582--32663	15	5.5	15	88	2	121	35	19	7	37	1.80
32582--32663	30	2.8	30	94	1	139	35	19	7	37	1.80
32582--32668	45	2.0	44	93	2	147	33	19	6	40	1.78
33894--34111	103	2.1	103	99	0	427	26	13	23	36	1.92
34135--34195	23	2.7	23	89	0	86	22	19	26	31	1.98
36917--37126	102	2.0	106	94	3	374	34	9	15	40	1.80
37063--37102	21	1.9	21	94	0	71	32	10	7	50	1.64
37326--37404	20	3.8	20	76	17	70	24	34	20	21	1.97
38888--38955	34	2.1	34	83	5	86	33	16	26	23	1.95
39684--39737	20	2.4	24	76	20	62	40	1	0	57	1.09
39689--39735	22	2.2	22	88	7	71	42	2	0	55	1.12
39917--39973	21	2.7	21	86	0	78	56	8	0	35	1.31
51070--51123	20	2.6	21	82	2	74	27	24	16	31	1.96
51111--51339	20	11.4	20	83	5	248	36	25	17	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52031--52077	24	2.0	24	87	8	69	25	14	21	38	1.92
52252--52276	12	2.1	12	100	0	50	72	0	28	0	0.86
54575--54750	19	9.7	19	81	14	228	46	17	21	14	1.84
54575--54741	72	2.3	70	86	11	216	47	17	20	14	1.82
54575--54750	91	1.9	91	94	0	307	46	17	21	14	1.84
54721--54836	53	2.2	52	86	3	160	18	23	18	38	1.93
54759--54846	19	4.8	19	82	14	123	13	22	15	47	1.81
54937--54973	14	2.6	14	91	0	65	45	21	0	32	1.52
56898--57046	19	8.3	19	73	15	129	46	24	19	9	1.79
56973--57029	14	3.7	14	72	20	51	43	28	21	7	1.78
56916--57046	33	3.8	33	87	5	172	46	24	20	8	1.78
56915--57046	52	2.5	51	76	8	158	46	24	20	8	1.77
57051--57138	19	5.2	18	70	25	75	7	17	27	47	1.75
57063--57121	14	3.9	14	76	20	64	6	16	28	47	1.72
57051--57170	33	3.6	33	90	1	177	9	17	26	46	1.78
57096--57152	14	3.7	14	72	20	51	8	22	24	43	1.81
57268--57582	93	3.4	93	98	0	605	45	19	13	22	1.84
59282--59346	21	3.1	21	80	4	87	49	15	24	10	1.76
59388--59477	14	5.7	14	72	23	72	8	23	22	45	1.80
59371--59484	33	3.5	33	95	0	201	8	21	21	48	1.77
59465--59538	21	3.5	21	80	7	96	14	20	17	47	1.83
59618--59688	33	2.2	33	94	0	124	47	16	23	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60067--60218	20	7.6	20	86	2	198	19	19	26	33	1.96
60212--60259	20	2.3	20	85	3	69	35	14	22	27	1.93
60654--60683	8	3.8	8	100	0	60	90	0	0	10	0.47
72522--73067	272	2.0	274	96	1	1006	37	16	17	27	1.92
74796--74857	31	2.0	31	90	6	99	46	8	4	40	1.55
83112--83167	23	2.4	24	82	8	80	33	19	19	26	1.96
93793--93837	23	2.0	23	81	0	54	22	26	24	26	2.00
100572--100602	15	2.1	14	94	5	53	51	29	0	19	1.47
102816--102899	21	3.9	21	72	14	64	14	25	36	23	1.92
110272--110316	23	2.0	23	81	0	54	22	26	24	26	2.00
113715--113807	34	2.7	34	88	8	145	92	0	7	0	0.39
113713--113807	43	2.2	44	94	1	165	91	0	8	0	0.42
113715--113807	1	93.0	1	84	0	123	92	0	7	0	0.39
116849--116931	30	2.8	30	85	1	105	36	30	16	16	1.92
116906--117031	31	4.1	31	79	5	139	34	20	18	26	1.96
116907--117028	62	2.0	61	87	4	174	32	20	18	27	1.96

Tables:   1

The End!